Wall clock time and date at job start Tue Mar 31 2020 12:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86799 * 119.99582 * 2 1 4 4 H 1.48494 * 109.47398 * 274.98050 * 3 2 1 5 5 H 1.48504 * 109.47125 * 34.98323 * 3 2 1 6 6 H 1.48504 * 109.47304 * 154.97960 * 3 2 1 7 7 C 1.40250 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99648 * 198.65229 * 7 2 1 9 9 C 1.41078 * 119.99782 * 18.64912 * 7 2 1 10 10 C 1.40913 * 120.09677 * 26.12601 * 9 7 2 11 11 C 1.36295 * 119.89537 * 180.24794 * 10 9 7 12 12 C 1.40081 * 120.10001 * 359.47931 * 11 10 9 13 13 C 1.47480 * 119.89998 * 180.29538 * 12 11 10 14 14 O 1.21517 * 120.00071 * 0.02562 * 13 12 11 15 15 O 1.34779 * 119.99973 * 179.97438 * 13 12 11 16 16 C 1.35918 * 116.99916 * 175.12144 * 15 13 12 17 17 C 1.38773 * 120.03337 * 77.10665 * 16 15 13 18 18 C 1.38136 * 120.00274 * 179.97438 * 17 16 15 19 19 C 1.38348 * 120.06673 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.96463 * 180.02562 * 19 18 17 21 21 C 1.38572 * 120.06614 * 0.02562 * 19 18 17 22 22 F 1.35096 * 120.00111 * 179.97438 * 21 19 18 23 23 C 1.38362 * 119.99541 * 359.70793 * 21 19 18 24 24 C 1.40081 * 120.19888 * 0.27481 * 12 11 10 25 25 C 1.36297 * 120.09945 * 359.97438 * 24 12 11 26 26 H 0.96993 * 120.00461 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.04909 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.94938 * 179.75179 * 11 10 9 29 29 H 1.07994 * 119.99758 * 359.97438 * 17 16 15 30 30 H 1.07998 * 119.96224 * 179.97438 * 18 17 16 31 31 H 1.08005 * 120.03289 * 180.29208 * 23 21 19 32 32 H 1.07994 * 119.94819 * 180.02562 * 24 12 11 33 33 H 1.08001 * 120.04642 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3824 2.1073 -1.3947 5 1 1.4942 2.6200 0.8027 6 1 3.5865 1.4123 0.5922 7 6 2.0077 -1.2145 -0.0005 8 1 3.0451 -1.2391 0.2986 9 6 1.3579 -2.4041 -0.3918 10 6 0.2580 -2.3521 -1.2711 11 6 -0.3698 -3.5035 -1.6424 12 6 0.0835 -4.7379 -1.1599 13 6 -0.5952 -5.9815 -1.5696 14 8 -1.5458 -5.9344 -2.3251 15 8 -0.1604 -7.1704 -1.1070 16 6 -0.8908 -8.2670 -1.4408 17 6 -0.7857 -8.8104 -2.7134 18 6 -1.5279 -9.9252 -3.0519 19 6 -2.3761 -10.5014 -2.1231 20 17 -3.3071 -11.9027 -2.5510 21 6 -2.4832 -9.9610 -0.8515 22 9 -3.3122 -10.5244 0.0542 23 6 -1.7368 -8.8478 -0.5079 24 6 1.1797 -4.7948 -0.2896 25 6 1.8105 -3.6480 0.0910 26 1 -0.4850 0.8399 0.0004 27 1 -0.0891 -1.4012 -1.6474 28 1 -1.2154 -3.4643 -2.3131 29 1 -0.1236 -8.3618 -3.4391 30 1 -1.4459 -10.3474 -4.0425 31 1 -1.8163 -8.4290 0.4844 32 1 1.5261 -5.7487 0.0796 33 1 2.6558 -3.6929 0.7616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761917998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:13 Heat of formation + Delta-G solvation = -90.106754 kcal Electronic energy + Delta-G solvation = -22462.363278 eV Core-core repulsion = 18586.255671 eV Total energy + Delta-G solvation = -3876.107607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.15609 -40.89975 -38.71044 -37.61684 -36.74634 -35.97015 -34.08863 -31.13911 -30.62661 -29.97419 -29.57308 -26.41327 -23.85457 -23.33547 -22.06332 -21.18942 -20.21272 -18.28568 -17.67324 -17.30581 -17.10024 -16.85297 -16.13389 -15.91775 -15.52681 -14.98474 -14.36500 -14.20316 -14.02355 -13.55603 -13.47549 -13.12966 -12.94178 -12.71083 -12.36118 -12.25251 -12.01526 -11.66494 -11.46968 -11.39010 -11.22354 -11.10213 -10.87369 -10.72914 -10.26481 -9.84948 -9.66916 -9.52219 -9.21891 -8.73625 -7.88849 -7.78750 -7.22283 -4.80170 0.60212 0.82728 1.74970 1.84722 2.77651 2.83066 2.86585 2.90058 2.91174 3.35981 3.52170 3.62219 3.89937 4.32009 4.45010 4.73591 4.80316 5.06408 5.37085 5.40790 5.60486 5.72961 5.84947 6.04308 6.05813 6.11566 6.36238 6.62993 6.69392 6.86749 6.89769 6.93310 7.28263 7.46097 7.64931 7.72366 7.87767 8.22753 8.43209 8.50184 8.56209 9.69811 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.042009 B = 0.002280 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.371158 B =12279.394875 C =12329.039798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.430 4.430 8 H 0.090 0.910 9 C 0.133 3.867 10 C -0.183 4.183 11 C -0.029 4.029 12 C -0.277 4.277 13 C 0.513 3.487 14 O -0.530 6.530 15 O -0.300 6.300 16 C 0.142 3.858 17 C -0.121 4.121 18 C -0.067 4.067 19 C -0.082 4.082 20 Cl -0.052 7.052 21 C 0.125 3.875 22 F -0.124 7.124 23 C -0.151 4.151 24 C -0.026 4.026 25 C -0.237 4.237 26 H 0.291 0.709 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.104 0.896 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 -12.514 -2.761 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.456 4.456 8 H 0.108 0.892 9 C 0.129 3.871 10 C -0.202 4.202 11 C -0.048 4.048 12 C -0.279 4.279 13 C 0.367 3.633 14 O -0.421 6.421 15 O -0.217 6.217 16 C 0.100 3.900 17 C -0.140 4.140 18 C -0.086 4.086 19 C -0.110 4.110 20 Cl -0.023 7.023 21 C 0.104 3.896 22 F -0.102 7.102 23 C -0.170 4.170 24 C -0.045 4.045 25 C -0.257 4.257 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.121 0.879 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.122 0.878 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.849 -12.485 -2.975 12.967 hybrid contribution -0.059 0.455 0.188 0.496 sum -1.907 -12.030 -2.787 12.495 Atomic orbital electron populations 1.69731 1.08074 1.30675 1.29535 1.26197 0.94869 1.02235 0.91846 0.86134 0.80682 0.79511 0.79690 1.18782 1.19788 1.18045 1.19991 0.98810 0.91230 1.35571 0.89207 1.17867 0.89972 0.92297 0.86965 1.20926 1.00500 0.96801 1.01983 1.20431 0.96975 0.91003 0.96381 1.18074 1.06111 0.87968 1.15763 1.22009 0.81816 0.81948 0.77509 1.90763 1.28965 1.86260 1.36108 1.84742 1.51021 1.14287 1.71629 1.18289 0.91627 0.87730 0.92402 1.21431 1.00323 0.96257 0.95995 1.20789 0.93913 0.94788 0.99094 1.20958 1.01187 0.94435 0.94422 1.98378 1.71975 1.38893 1.93073 1.16991 0.92712 0.93915 0.85951 1.91549 1.69119 1.83833 1.65688 1.21132 0.96605 0.96693 1.02573 1.20558 0.92977 0.97417 0.93560 1.20736 1.05065 0.92573 1.07282 0.89760 0.86109 0.87898 0.83697 0.83310 0.82852 0.87822 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.44 11.10 55.56 0.62 -16.82 16 2 C 0.07 1.59 5.10 -17.31 -0.09 1.50 16 3 Si 0.92 16.28 29.60 -169.99 -5.03 11.25 16 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 6 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 7 C -0.43 -10.01 9.03 -37.75 -0.34 -10.35 16 8 H 0.09 1.97 7.92 -52.49 -0.42 1.56 16 9 C 0.13 3.19 5.55 -106.80 -0.59 2.59 16 10 C -0.18 -4.40 8.62 -39.27 -0.34 -4.74 16 11 C -0.03 -0.67 9.52 -39.59 -0.38 -1.04 16 12 C -0.28 -6.10 5.89 -104.75 -0.62 -6.72 16 13 C 0.51 10.63 7.76 34.50 0.27 10.90 16 14 O -0.53 -11.83 15.86 -19.28 -0.31 -12.14 16 15 O -0.30 -5.37 9.25 -24.96 -0.23 -5.60 16 16 C 0.14 2.21 5.14 -39.22 -0.20 2.00 16 17 C -0.12 -1.61 9.58 -39.42 -0.38 -1.99 16 18 C -0.07 -0.75 9.82 -39.58 -0.39 -1.14 16 19 C -0.08 -1.00 6.33 -39.42 -0.25 -1.25 16 20 Cl -0.05 -0.57 28.61 -51.86 -1.48 -2.05 16 21 C 0.12 1.65 7.27 -39.41 -0.29 1.37 16 22 F -0.12 -1.64 16.83 2.25 0.04 -1.60 16 23 C -0.15 -2.12 9.97 -39.37 -0.39 -2.52 16 24 C -0.03 -0.55 9.55 -39.59 -0.38 -0.93 16 25 C -0.24 -5.25 9.73 -39.27 -0.38 -5.63 16 26 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 27 H 0.12 2.94 6.30 -52.49 -0.33 2.61 16 28 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 29 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.15 1.98 8.06 -52.48 -0.42 1.56 16 32 H 0.10 1.91 7.59 -52.49 -0.40 1.51 16 33 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -25.55 321.40 -8.67 -34.22 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -2.37 Total: 5.86 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -4.74 Total: -17.95 kcal Atomic # 7 Polarization: -17.44 SS G_CDS: 0.62 Total: -16.82 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.54 Total: -17.74 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -25.55 -8.67 -34.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761917998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.890 kcal (2) G-P(sol) polarization free energy of solvation -25.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds