Wall clock time and date at job start Tue Mar 31 2020 12:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86799 * 119.99582 * 2 1 4 4 H 1.48494 * 109.47398 * 274.98050 * 3 2 1 5 5 H 1.48504 * 109.47125 * 34.98323 * 3 2 1 6 6 H 1.48504 * 109.47304 * 154.97960 * 3 2 1 7 7 C 1.40250 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99648 * 198.65229 * 7 2 1 9 9 C 1.41078 * 119.99782 * 18.64912 * 7 2 1 10 10 C 1.40913 * 120.09677 * 26.12601 * 9 7 2 11 11 C 1.36295 * 119.89537 * 180.24794 * 10 9 7 12 12 C 1.40081 * 120.10001 * 359.47931 * 11 10 9 13 13 C 1.47480 * 119.89998 * 180.29538 * 12 11 10 14 14 O 1.21517 * 120.00071 * 0.02562 * 13 12 11 15 15 O 1.34779 * 119.99973 * 179.97438 * 13 12 11 16 16 C 1.35918 * 116.99916 * 175.12144 * 15 13 12 17 17 C 1.38773 * 120.03337 * 77.10665 * 16 15 13 18 18 C 1.38136 * 120.00274 * 179.97438 * 17 16 15 19 19 C 1.38348 * 120.06673 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.96463 * 180.02562 * 19 18 17 21 21 C 1.38572 * 120.06614 * 0.02562 * 19 18 17 22 22 F 1.35096 * 120.00111 * 179.97438 * 21 19 18 23 23 C 1.38362 * 119.99541 * 359.70793 * 21 19 18 24 24 C 1.40081 * 120.19888 * 0.27481 * 12 11 10 25 25 C 1.36297 * 120.09945 * 359.97438 * 24 12 11 26 26 H 0.96993 * 120.00461 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.04909 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.94938 * 179.75179 * 11 10 9 29 29 H 1.07994 * 119.99758 * 359.97438 * 17 16 15 30 30 H 1.07998 * 119.96224 * 179.97438 * 18 17 16 31 31 H 1.08005 * 120.03289 * 180.29208 * 23 21 19 32 32 H 1.07994 * 119.94819 * 180.02562 * 24 12 11 33 33 H 1.08001 * 120.04642 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3824 2.1073 -1.3947 5 1 1.4942 2.6200 0.8027 6 1 3.5865 1.4123 0.5922 7 6 2.0077 -1.2145 -0.0005 8 1 3.0451 -1.2391 0.2986 9 6 1.3579 -2.4041 -0.3918 10 6 0.2580 -2.3521 -1.2711 11 6 -0.3698 -3.5035 -1.6424 12 6 0.0835 -4.7379 -1.1599 13 6 -0.5952 -5.9815 -1.5696 14 8 -1.5458 -5.9344 -2.3251 15 8 -0.1604 -7.1704 -1.1070 16 6 -0.8908 -8.2670 -1.4408 17 6 -0.7857 -8.8104 -2.7134 18 6 -1.5279 -9.9252 -3.0519 19 6 -2.3761 -10.5014 -2.1231 20 17 -3.3071 -11.9027 -2.5510 21 6 -2.4832 -9.9610 -0.8515 22 9 -3.3122 -10.5244 0.0542 23 6 -1.7368 -8.8478 -0.5079 24 6 1.1797 -4.7948 -0.2896 25 6 1.8105 -3.6480 0.0910 26 1 -0.4850 0.8399 0.0004 27 1 -0.0891 -1.4012 -1.6474 28 1 -1.2154 -3.4643 -2.3131 29 1 -0.1236 -8.3618 -3.4391 30 1 -1.4459 -10.3474 -4.0425 31 1 -1.8163 -8.4290 0.4844 32 1 1.5261 -5.7487 0.0796 33 1 2.6558 -3.6929 0.7616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761917998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:12 Heat of formation + Delta-G solvation = -98.879013 kcal Electronic energy + Delta-G solvation = -22462.743671 eV Core-core repulsion = 18586.255671 eV Total energy + Delta-G solvation = -3876.488000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.19880 -42.28712 -40.02078 -39.16980 -37.93514 -37.28904 -35.78709 -32.32862 -32.09733 -31.57213 -30.94311 -28.09016 -25.26429 -24.36848 -23.55032 -22.83598 -21.77534 -19.63454 -19.33988 -18.68982 -18.38166 -17.99515 -17.33070 -17.18128 -16.95643 -16.36599 -15.84654 -15.64244 -15.19068 -15.15399 -14.74052 -14.52327 -14.11507 -14.05743 -13.85700 -13.76074 -13.34203 -13.21760 -12.89489 -12.71123 -12.54608 -12.42504 -12.23563 -12.03335 -11.84209 -11.48623 -11.37767 -11.18705 -10.25054 -9.81917 -9.65855 -9.55894 -8.88526 -6.57449 -0.49490 -0.18998 0.15387 0.78384 1.12859 1.33594 1.41057 1.55185 1.58286 1.79753 2.13847 2.32033 2.64478 2.84630 3.43684 3.59710 3.63225 3.74332 4.01249 4.31072 4.35244 4.38509 4.50396 4.67922 4.73206 4.92068 4.96175 4.99583 5.10811 5.16563 5.18386 5.51300 5.54314 5.74120 5.90221 5.95147 6.12770 6.46872 6.67671 6.79268 6.93054 8.06992 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.042009 B = 0.002280 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.371158 B =12279.394875 C =12329.039798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.454 4.454 8 H 0.098 0.902 9 C 0.107 3.893 10 C -0.201 4.201 11 C -0.036 4.036 12 C -0.290 4.290 13 C 0.521 3.479 14 O -0.550 6.550 15 O -0.294 6.294 16 C 0.105 3.895 17 C -0.121 4.121 18 C -0.054 4.054 19 C -0.079 4.079 20 Cl -0.036 7.036 21 C 0.117 3.883 22 F -0.125 7.125 23 C -0.154 4.154 24 C -0.020 4.020 25 C -0.248 4.248 26 H 0.300 0.700 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.155 0.845 30 H 0.184 0.816 31 H 0.158 0.842 32 H 0.131 0.869 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -13.483 -3.084 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.173 1.173 7 C -0.480 4.480 8 H 0.116 0.884 9 C 0.103 3.897 10 C -0.220 4.220 11 C -0.055 4.055 12 C -0.292 4.292 13 C 0.375 3.625 14 O -0.443 6.443 15 O -0.210 6.210 16 C 0.063 3.937 17 C -0.139 4.139 18 C -0.073 4.073 19 C -0.107 4.107 20 Cl -0.007 7.007 21 C 0.096 3.904 22 F -0.103 7.103 23 C -0.173 4.173 24 C -0.038 4.038 25 C -0.267 4.267 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.173 0.827 30 H 0.201 0.799 31 H 0.176 0.824 32 H 0.149 0.851 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.298 -13.491 -3.287 13.946 hybrid contribution -0.327 0.557 0.264 0.698 sum -1.625 -12.934 -3.023 13.382 Atomic orbital electron populations 1.69768 1.09600 1.32128 1.29845 1.27074 0.95483 1.05328 0.90726 0.85043 0.79392 0.74904 0.79690 1.18523 1.19096 1.17342 1.20306 0.99359 0.91960 1.36384 0.88398 1.18211 0.90365 0.93636 0.87466 1.20886 1.01484 0.96615 1.03039 1.20503 0.96983 0.91515 0.96528 1.18273 1.06602 0.88419 1.15907 1.21700 0.81123 0.82670 0.76981 1.90739 1.29694 1.86932 1.36921 1.84696 1.51108 1.14085 1.71143 1.18593 0.93453 0.87576 0.94051 1.21620 1.00430 0.96661 0.95208 1.21118 0.92326 0.93601 1.00231 1.21142 1.00873 0.94575 0.94064 1.98391 1.71550 1.37915 1.92876 1.17040 0.92840 0.93998 0.86484 1.91545 1.69124 1.83793 1.65865 1.21173 0.96425 0.96990 1.02692 1.20792 0.92108 0.98293 0.92611 1.20968 1.05769 0.92303 1.07654 0.88890 0.87352 0.88006 0.82738 0.79870 0.82436 0.85104 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.01 11.10 21.88 0.24 -36.77 16 2 C 0.03 1.53 5.10 85.36 0.44 1.96 16 3 Si 0.99 32.87 29.60 68.60 2.03 34.90 16 4 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 5 H -0.27 -8.49 7.11 99.48 0.71 -7.78 16 6 H -0.25 -7.97 7.11 99.48 0.71 -7.26 16 7 C -0.45 -21.37 9.03 23.46 0.21 -21.16 16 8 H 0.10 4.29 7.92 -2.91 -0.02 4.26 16 9 C 0.11 5.23 5.55 -21.28 -0.12 5.11 16 10 C -0.20 -10.00 8.62 22.47 0.19 -9.81 16 11 C -0.04 -1.73 9.52 22.26 0.21 -1.51 16 12 C -0.29 -12.85 5.89 -19.95 -0.12 -12.97 16 13 C 0.52 21.50 7.76 70.26 0.55 22.04 16 14 O -0.55 -24.57 15.86 19.78 0.31 -24.26 16 15 O -0.29 -10.32 9.25 -0.55 -0.01 -10.33 16 16 C 0.11 3.16 5.14 22.51 0.12 3.28 16 17 C -0.12 -2.98 9.58 22.37 0.21 -2.76 16 18 C -0.05 -1.07 9.82 22.27 0.22 -0.85 16 19 C -0.08 -1.74 6.33 22.38 0.14 -1.60 16 20 Cl -0.04 -0.70 28.61 -2.72 -0.08 -0.78 16 21 C 0.12 2.93 7.27 22.38 0.16 3.09 16 22 F -0.12 -3.16 16.83 44.97 0.76 -2.40 16 23 C -0.15 -4.20 9.97 22.41 0.22 -3.98 16 24 C -0.02 -0.81 9.55 22.26 0.21 -0.60 16 25 C -0.25 -10.94 9.73 22.47 0.22 -10.73 16 26 H 0.30 12.48 8.29 -92.71 -0.77 11.71 16 27 H 0.11 5.54 6.30 -2.91 -0.02 5.52 16 28 H 0.10 4.71 7.63 -2.91 -0.02 4.69 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.13 4.62 7.59 -2.91 -0.02 4.60 16 33 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -55.05 321.40 7.30 -47.75 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 1.17 Total: 22.38 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 2.87 Total: -30.48 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.24 Total: -36.77 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: 0.31 Total: -34.59 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.76 Total: -2.40 kcal Atomic # 14 Polarization: 32.87 SS G_CDS: 2.03 Total: 34.90 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -55.05 7.30 -47.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761917998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.133 kcal (2) G-P(sol) polarization free energy of solvation -55.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds