Wall clock time and date at job start Tue Mar 31 2020 12:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86805 * 120.00197 * 2 1 4 4 H 1.48498 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46692 * 300.00278 * 3 2 1 6 6 H 1.48493 * 109.47052 * 60.00072 * 3 2 1 7 7 C 1.39938 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00182 * 167.98943 * 7 2 1 9 9 C 1.41442 * 120.00177 * 347.98401 * 7 2 1 10 10 C 1.40789 * 120.17688 * 152.02323 * 9 7 2 11 11 C 1.37718 * 120.05109 * 180.02562 * 10 9 7 12 12 C 1.38354 * 120.41789 * 359.69420 * 11 10 9 13 13 C 1.39927 * 120.35568 * 0.56362 * 12 11 10 14 14 C 1.47753 * 120.03489 * 179.74322 * 13 12 11 15 15 O 1.21477 * 120.00298 * 179.72188 * 14 13 12 16 16 O 1.34712 * 119.99816 * 359.44441 * 14 13 12 17 17 C 1.35925 * 117.00095 * 175.39349 * 16 14 13 18 18 C 1.38760 * 120.03064 * 77.91584 * 17 16 14 19 19 C 1.38140 * 120.00320 * 179.97438 * 18 17 16 20 20 C 1.38336 * 120.06968 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.96957 * 179.97438 * 20 19 18 22 22 C 1.38573 * 120.06239 * 359.97438 * 20 19 18 23 23 F 1.35106 * 120.00311 * 180.02562 * 22 20 19 24 24 C 1.38364 * 119.99657 * 359.74145 * 22 20 19 25 25 C 1.39093 * 119.93563 * 359.46412 * 13 12 11 26 26 H 0.96998 * 120.00252 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.97121 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.78625 * 180.02562 * 11 10 9 29 29 H 1.08008 * 119.82309 * 180.30556 * 12 11 10 30 30 H 1.07997 * 120.00071 * 0.02562 * 18 17 16 31 31 H 1.08007 * 119.96246 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.03855 * 180.27171 * 24 22 20 33 33 H 1.08005 * 120.20996 * 180.22891 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0701 -1.2221 -0.1952 9 6 1.3240 -2.4235 0.2539 10 6 1.7995 -3.6322 -0.2894 11 6 1.1313 -4.8104 -0.0404 12 6 -0.0055 -4.8178 0.7482 13 6 -0.4964 -3.6258 1.2924 14 6 -1.7142 -3.6411 2.1289 15 8 -2.1370 -2.6066 2.6052 16 8 -2.3590 -4.8013 2.3586 17 6 -3.4152 -4.7617 3.2133 18 6 -4.6398 -4.2725 2.7816 19 6 -5.7130 -4.2329 3.6505 20 6 -5.5683 -4.6801 4.9516 21 17 -6.9185 -4.6286 6.0415 22 6 -4.3465 -5.1692 5.3857 23 9 -4.2067 -5.6061 6.6564 24 6 -3.2715 -5.2155 4.5159 25 6 0.1666 -2.4273 1.0500 26 1 -0.4850 0.8400 0.0004 27 1 2.6890 -3.6354 -0.9018 28 1 1.5001 -5.7352 -0.4589 29 1 -0.5192 -5.7480 0.9413 30 1 -4.7543 -3.9235 1.7660 31 1 -6.6658 -3.8516 3.3139 32 1 -2.3201 -5.6006 4.8522 33 1 -0.2063 -1.5052 1.4710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761918033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:20 Heat of formation + Delta-G solvation = -84.313692 kcal Electronic energy + Delta-G solvation = -22782.981408 eV Core-core repulsion = 18907.125007 eV Total energy + Delta-G solvation = -3875.856401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.18501 -41.05951 -38.80247 -37.58023 -36.78389 -36.10550 -33.83911 -31.19339 -30.76032 -29.80989 -29.59578 -25.57707 -24.48311 -23.38573 -22.30013 -21.11734 -20.23672 -18.43815 -17.88492 -17.32741 -16.98518 -16.32552 -16.18163 -15.91335 -15.18218 -15.11058 -14.81478 -14.29973 -14.03336 -13.60896 -13.45955 -13.16280 -12.96217 -12.75197 -12.65520 -12.21384 -11.81475 -11.56646 -11.31464 -11.23614 -11.20762 -10.93695 -10.83516 -10.61118 -10.42381 -9.85621 -9.77389 -9.38593 -9.26128 -8.79016 -7.90541 -7.64720 -6.88200 -4.55834 0.54382 0.79006 1.72037 1.73342 2.66659 2.71984 3.01962 3.02940 3.07108 3.29400 3.42684 3.84052 3.84871 4.39527 4.49186 4.68192 4.73132 4.99698 5.35377 5.40097 5.55006 5.63642 5.72600 5.98689 6.00036 6.23474 6.24567 6.55814 6.73196 6.82038 6.82731 7.07536 7.16801 7.53028 7.60310 7.78966 7.97549 8.28937 8.33463 8.64911 8.69057 10.06637 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002939 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.898531 B = 9523.217147 C =10370.762672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.194 4.194 11 C -0.104 4.104 12 C -0.190 4.190 13 C -0.117 4.117 14 C 0.513 3.487 15 O -0.494 6.494 16 O -0.294 6.294 17 C 0.135 3.865 18 C -0.119 4.119 19 C -0.067 4.067 20 C -0.080 4.080 21 Cl -0.050 7.050 22 C 0.124 3.876 23 F -0.123 7.123 24 C -0.148 4.148 25 C -0.081 4.081 26 H 0.284 0.716 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 -7.410 6.126 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.092 3.908 10 C -0.214 4.214 11 C -0.123 4.123 12 C -0.210 4.210 13 C -0.118 4.118 14 C 0.361 3.639 15 O -0.380 6.380 16 O -0.210 6.210 17 C 0.093 3.907 18 C -0.138 4.138 19 C -0.085 4.085 20 C -0.107 4.107 21 Cl -0.021 7.021 22 C 0.104 3.896 23 F -0.101 7.101 24 C -0.168 4.168 25 C -0.100 4.100 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.662 -6.910 6.408 13.497 hybrid contribution 0.094 0.678 0.282 0.740 sum -9.568 -6.232 6.690 13.234 Atomic orbital electron populations 1.69732 1.07509 1.29697 1.34928 1.25960 0.94890 1.01616 0.92253 0.86157 0.80726 0.80576 0.78717 1.18337 1.19843 1.19591 1.19613 0.96465 0.90202 1.42473 0.89851 1.17564 0.91278 0.92773 0.89184 1.21273 1.02510 0.93146 1.04432 1.20531 0.95808 0.97008 0.98911 1.20595 0.99691 0.95647 1.05082 1.18735 0.93555 0.96425 1.03120 1.22352 0.83315 0.79761 0.78448 1.90828 1.65539 1.32564 1.49106 1.84757 1.40570 1.37652 1.58034 1.18287 0.87007 0.97045 0.88356 1.21452 0.91604 0.99261 1.01437 1.20807 0.99976 0.97596 0.90147 1.20979 0.88881 1.07424 0.93437 1.98382 1.43380 1.97183 1.63186 1.16980 0.92678 0.99751 0.80189 1.91555 1.96203 1.86928 1.35436 1.21117 0.99586 1.04201 0.91862 1.21729 0.96036 0.95388 0.96852 0.90444 0.88107 0.88274 0.87692 0.83519 0.83165 0.82777 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.01 10.85 55.55 0.60 -19.41 16 2 C 0.07 1.71 5.23 -17.35 -0.09 1.62 16 3 Si 0.91 18.03 29.58 -169.99 -5.03 13.00 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.46 -11.42 9.06 -37.73 -0.34 -11.76 16 8 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 9 C 0.09 2.36 5.55 -106.87 -0.59 1.76 16 10 C -0.19 -4.32 9.78 -38.81 -0.38 -4.70 16 11 C -0.10 -2.11 10.01 -39.73 -0.40 -2.50 16 12 C -0.19 -3.90 9.62 -38.91 -0.37 -4.28 16 13 C -0.12 -2.64 5.87 -105.06 -0.62 -3.26 16 14 C 0.51 10.75 7.78 34.62 0.27 11.02 16 15 O -0.49 -11.35 15.90 -19.25 -0.31 -11.65 16 16 O -0.29 -5.18 9.26 -24.80 -0.23 -5.41 16 17 C 0.14 2.07 5.12 -39.22 -0.20 1.87 16 18 C -0.12 -1.58 9.62 -39.42 -0.38 -1.96 16 19 C -0.07 -0.75 9.82 -39.58 -0.39 -1.14 16 20 C -0.08 -0.96 6.33 -39.42 -0.25 -1.21 16 21 Cl -0.05 -0.55 28.61 -51.86 -1.48 -2.03 16 22 C 0.12 1.62 7.27 -39.41 -0.29 1.34 16 23 F -0.12 -1.60 16.83 2.25 0.04 -1.56 16 24 C -0.15 -2.04 9.97 -39.37 -0.39 -2.43 16 25 C -0.08 -2.02 8.21 -38.42 -0.32 -2.34 16 26 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 27 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.10 1.90 7.59 -52.48 -0.40 1.50 16 30 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.14 3.73 5.78 -52.48 -0.30 3.43 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -26.64 321.41 -8.66 -35.30 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -2.36 Total: 4.90 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -4.74 Total: -17.97 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.60 Total: -19.41 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.54 Total: -17.07 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.64 -8.66 -35.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761918033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.011 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds