Wall clock time and date at job start Tue Mar 31 2020 12:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86805 * 120.00197 * 2 1 4 4 H 1.48498 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46692 * 300.00278 * 3 2 1 6 6 H 1.48493 * 109.47052 * 60.00072 * 3 2 1 7 7 C 1.39938 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00182 * 167.98943 * 7 2 1 9 9 C 1.41442 * 120.00177 * 347.98401 * 7 2 1 10 10 C 1.40789 * 120.17688 * 152.02323 * 9 7 2 11 11 C 1.37718 * 120.05109 * 180.02562 * 10 9 7 12 12 C 1.38354 * 120.41789 * 359.69420 * 11 10 9 13 13 C 1.39927 * 120.35568 * 0.56362 * 12 11 10 14 14 C 1.47753 * 120.03489 * 179.74322 * 13 12 11 15 15 O 1.21477 * 120.00298 * 179.72188 * 14 13 12 16 16 O 1.34712 * 119.99816 * 359.44441 * 14 13 12 17 17 C 1.35925 * 117.00095 * 175.39349 * 16 14 13 18 18 C 1.38760 * 120.03064 * 77.91584 * 17 16 14 19 19 C 1.38140 * 120.00320 * 179.97438 * 18 17 16 20 20 C 1.38336 * 120.06968 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.96957 * 179.97438 * 20 19 18 22 22 C 1.38573 * 120.06239 * 359.97438 * 20 19 18 23 23 F 1.35106 * 120.00311 * 180.02562 * 22 20 19 24 24 C 1.38364 * 119.99657 * 359.74145 * 22 20 19 25 25 C 1.39093 * 119.93563 * 359.46412 * 13 12 11 26 26 H 0.96998 * 120.00252 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.97121 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.78625 * 180.02562 * 11 10 9 29 29 H 1.08008 * 119.82309 * 180.30556 * 12 11 10 30 30 H 1.07997 * 120.00071 * 0.02562 * 18 17 16 31 31 H 1.08007 * 119.96246 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.03855 * 180.27171 * 24 22 20 33 33 H 1.08005 * 120.20996 * 180.22891 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0701 -1.2221 -0.1952 9 6 1.3240 -2.4235 0.2539 10 6 1.7995 -3.6322 -0.2894 11 6 1.1313 -4.8104 -0.0404 12 6 -0.0055 -4.8178 0.7482 13 6 -0.4964 -3.6258 1.2924 14 6 -1.7142 -3.6411 2.1289 15 8 -2.1370 -2.6066 2.6052 16 8 -2.3590 -4.8013 2.3586 17 6 -3.4152 -4.7617 3.2133 18 6 -4.6398 -4.2725 2.7816 19 6 -5.7130 -4.2329 3.6505 20 6 -5.5683 -4.6801 4.9516 21 17 -6.9185 -4.6286 6.0415 22 6 -4.3465 -5.1692 5.3857 23 9 -4.2067 -5.6061 6.6564 24 6 -3.2715 -5.2155 4.5159 25 6 0.1666 -2.4273 1.0500 26 1 -0.4850 0.8400 0.0004 27 1 2.6890 -3.6354 -0.9018 28 1 1.5001 -5.7352 -0.4589 29 1 -0.5192 -5.7480 0.9413 30 1 -4.7543 -3.9235 1.7660 31 1 -6.6658 -3.8516 3.3139 32 1 -2.3201 -5.6006 4.8522 33 1 -0.2063 -1.5052 1.4710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761918033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:20 Heat of formation + Delta-G solvation = -94.546445 kcal Electronic energy + Delta-G solvation = -22783.425133 eV Core-core repulsion = 18907.125007 eV Total energy + Delta-G solvation = -3876.300126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.21553 -42.46297 -40.09343 -39.13615 -38.03795 -37.37966 -35.60577 -32.47618 -32.12867 -31.40517 -30.97360 -27.35507 -25.97117 -24.41357 -23.63921 -22.85154 -21.76420 -19.91621 -19.37634 -18.48122 -18.11453 -17.94851 -17.44512 -17.01478 -16.77506 -16.53528 -16.46544 -15.58781 -15.20596 -15.17587 -14.81087 -14.56028 -14.35388 -14.13327 -13.89998 -13.55172 -13.29374 -12.97836 -12.82640 -12.64654 -12.59495 -12.31742 -12.24518 -12.10211 -12.08016 -11.55958 -11.45016 -11.14165 -10.28665 -9.87068 -9.65210 -9.42486 -8.64986 -6.42223 -0.55937 -0.22387 0.01944 0.75455 0.95068 1.39217 1.41136 1.45313 1.54416 1.67709 2.20121 2.24521 2.71933 2.80337 3.39345 3.51185 3.59910 3.69340 3.92794 4.22947 4.32769 4.43536 4.59588 4.64634 4.68994 4.83820 4.93934 5.03215 5.05534 5.09707 5.27678 5.40549 5.44387 5.78652 5.86315 6.00721 6.21360 6.51958 6.70903 6.86190 6.87187 8.31834 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002939 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.898531 B = 9523.217147 C =10370.762672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.492 4.492 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.195 4.195 11 C -0.101 4.101 12 C -0.174 4.174 13 C -0.129 4.129 14 C 0.519 3.481 15 O -0.522 6.522 16 O -0.283 6.283 17 C 0.099 3.901 18 C -0.120 4.120 19 C -0.055 4.055 20 C -0.076 4.076 21 Cl -0.035 7.035 22 C 0.117 3.883 23 F -0.123 7.123 24 C -0.148 4.148 25 C -0.113 4.113 26 H 0.287 0.713 27 H 0.117 0.883 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.153 0.847 31 H 0.184 0.816 32 H 0.163 0.837 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 -8.721 6.173 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.105 0.895 9 C 0.062 3.938 10 C -0.214 4.214 11 C -0.119 4.119 12 C -0.193 4.193 13 C -0.130 4.130 14 C 0.368 3.632 15 O -0.411 6.411 16 O -0.199 6.199 17 C 0.057 3.943 18 C -0.139 4.139 19 C -0.074 4.074 20 C -0.104 4.104 21 Cl -0.006 7.006 22 C 0.097 3.903 23 F -0.102 7.102 24 C -0.167 4.167 25 C -0.133 4.133 26 H 0.097 0.903 27 H 0.135 0.865 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.171 0.829 31 H 0.201 0.799 32 H 0.180 0.820 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.264 -8.265 6.455 14.675 hybrid contribution 0.135 0.860 0.352 0.939 sum -10.129 -7.405 6.807 14.275 Atomic orbital electron populations 1.69830 1.09016 1.30503 1.36504 1.26801 0.95527 1.04797 0.91402 0.85117 0.79569 0.76163 0.78666 1.17542 1.19096 1.19618 1.19876 0.96791 0.91215 1.44313 0.89550 1.17909 0.91854 0.94113 0.89924 1.21586 1.02937 0.93037 1.03870 1.20986 0.95010 0.97925 0.97937 1.21019 0.99297 0.95861 1.03146 1.18951 0.94158 0.96476 1.03429 1.22090 0.83019 0.80300 0.77810 1.90802 1.66291 1.33884 1.50121 1.84713 1.41187 1.35592 1.58416 1.18582 0.86931 0.99810 0.88952 1.21626 0.91453 0.98650 1.02174 1.21113 1.00621 0.96319 0.89313 1.21156 0.88991 1.06260 0.93967 1.98394 1.42421 1.97021 1.62740 1.17024 0.92973 1.00177 0.80122 1.91555 1.96240 1.86986 1.35380 1.21178 1.00338 1.03824 0.91397 1.21513 0.97563 0.95423 0.98772 0.90271 0.86532 0.83925 0.84613 0.82920 0.79913 0.81965 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.02 10.85 21.82 0.24 -43.78 16 2 C 0.03 1.43 5.23 85.26 0.45 1.87 16 3 Si 0.98 37.87 29.58 68.60 2.03 39.89 16 4 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.49 -25.36 9.06 23.47 0.21 -25.15 16 8 H 0.09 4.19 7.87 -2.91 -0.02 4.17 16 9 C 0.06 3.29 5.55 -21.32 -0.12 3.17 16 10 C -0.19 -8.52 9.78 22.77 0.22 -8.29 16 11 C -0.10 -3.80 10.01 22.17 0.22 -3.58 16 12 C -0.17 -6.78 9.62 22.71 0.22 -6.56 16 13 C -0.13 -5.86 5.87 -20.15 -0.12 -5.98 16 14 C 0.52 21.99 7.78 70.34 0.55 22.54 16 15 O -0.52 -24.76 15.90 19.91 0.32 -24.44 16 16 O -0.28 -9.83 9.26 0.05 0.00 -9.83 16 17 C 0.10 2.96 5.12 22.50 0.12 3.07 16 18 C -0.12 -3.05 9.62 22.37 0.22 -2.83 16 19 C -0.06 -1.12 9.82 22.27 0.22 -0.90 16 20 C -0.08 -1.68 6.33 22.37 0.14 -1.54 16 21 Cl -0.03 -0.68 28.61 -2.72 -0.08 -0.76 16 22 C 0.12 2.90 7.27 22.38 0.16 3.06 16 23 F -0.12 -3.04 16.83 44.97 0.76 -2.28 16 24 C -0.15 -3.94 9.97 22.41 0.22 -3.72 16 25 C -0.11 -5.90 8.21 23.02 0.19 -5.71 16 26 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 27 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 28 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.14 4.44 7.59 -2.91 -0.02 4.42 16 30 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 33 H 0.11 6.26 5.78 -2.91 -0.02 6.24 16 Total: -1.00 -59.71 321.41 7.33 -52.38 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.17 Total: 19.37 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 2.90 Total: -30.55 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: 0.32 Total: -34.27 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.76 Total: -2.28 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.89 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -59.71 7.33 -52.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761918033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.170 kcal (2) G-P(sol) polarization free energy of solvation -59.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds