Wall clock time and date at job start Tue Mar 31 2020 13:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47203 * 2 1 4 4 C 1.36931 * 119.99952 * 73.11039 * 3 2 1 5 5 H 1.08005 * 119.99920 * 207.84542 * 4 3 2 6 6 C 1.38813 * 120.00159 * 27.56964 * 4 3 2 7 7 N 1.31617 * 120.00081 * 27.75056 * 6 4 3 8 8 Si 1.86802 * 120.00187 * 207.74892 * 6 4 3 9 9 H 1.48499 * 109.46990 * 59.99722 * 8 6 4 10 10 H 1.48492 * 109.47196 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46884 * 300.00134 * 8 6 4 12 12 S 1.65601 * 119.99768 * 253.11338 * 3 2 1 13 13 O 1.42100 * 106.39989 * 23.53727 * 12 3 2 14 14 O 1.42101 * 106.40103 * 156.45826 * 12 3 2 15 15 C 1.76200 * 107.21521 * 269.99570 * 12 3 2 16 16 C 1.38208 * 120.37081 * 90.00448 * 15 12 3 17 17 N 1.31891 * 120.89099 * 179.97438 * 16 15 12 18 18 C 1.31916 * 121.76511 * 0.02562 * 17 16 15 19 19 Cl 1.73594 * 119.66974 * 179.97438 * 18 17 16 20 20 C 1.38855 * 120.65617 * 359.97438 * 18 17 16 21 21 O 1.35933 * 120.47912 * 180.02562 * 20 18 17 22 22 C 1.42890 * 117.00581 * 179.97438 * 21 20 18 23 23 C 1.38587 * 120.37938 * 269.72125 * 15 12 3 24 24 H 1.09003 * 109.47770 * 300.00584 * 1 2 3 25 25 H 1.09001 * 109.46909 * 60.00332 * 1 2 3 26 26 H 1.09004 * 109.47278 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47738 * 239.99870 * 2 1 3 28 28 H 1.09001 * 109.46909 * 119.99668 * 2 1 3 29 29 H 0.96996 * 120.00228 * 179.97438 * 7 6 4 30 30 H 1.07996 * 119.55423 * 359.97398 * 16 15 12 31 31 H 1.08997 * 109.47339 * 300.00750 * 22 21 20 32 32 H 1.09003 * 109.46882 * 59.99736 * 22 21 20 33 33 H 1.08994 * 109.47742 * 179.97438 * 22 21 20 34 34 H 1.08004 * 120.80181 * 0.02562 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.9217 2.1416 1.1347 5 1 1.8415 3.2161 1.0596 6 6 1.9211 1.5311 2.3814 7 7 2.5317 0.3773 2.5494 8 14 1.0537 2.3470 3.8206 9 1 -0.3871 2.5119 3.5012 10 1 1.1990 1.4994 5.0312 11 1 1.6603 3.6787 4.0736 12 16 2.6871 2.0230 -1.3723 13 8 2.1683 1.2712 -2.4608 14 8 2.5476 3.4331 -1.2651 15 6 4.4161 1.6883 -1.3155 16 6 4.9209 0.5243 -1.8635 17 7 6.2133 0.2637 -1.8272 18 6 7.0739 1.0944 -1.2709 19 17 8.7635 0.6965 -1.2529 20 6 6.6416 2.2839 -0.6997 21 8 7.5316 3.1376 -0.1279 22 6 7.0061 4.3402 0.4371 23 6 5.2859 2.5920 -0.7261 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 2.5316 -0.0492 3.4206 30 1 4.2480 -0.1814 -2.3278 31 1 6.5040 4.9173 -0.3394 32 1 6.2929 4.0911 1.2229 33 1 7.8201 4.9294 0.8593 34 1 4.9191 3.5113 -0.2939 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767703527.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:05 Heat of formation + Delta-G solvation = -90.761616 kcal Electronic energy + Delta-G solvation = -23462.690911 eV Core-core repulsion = 19741.918820 eV Total energy + Delta-G solvation = -3720.772091 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.043 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77204 -39.33716 -37.99299 -37.80079 -37.70940 -36.30930 -33.81059 -33.45419 -31.80738 -31.03321 -28.52419 -26.77495 -25.05367 -24.31654 -23.35574 -20.47955 -19.87246 -18.77123 -18.51884 -18.39646 -18.06072 -17.24015 -17.08684 -16.68808 -16.11157 -15.58575 -15.27138 -15.22292 -14.77352 -14.60503 -14.18023 -13.97691 -13.75341 -13.18168 -12.96113 -12.84579 -12.72658 -12.65139 -12.59697 -12.57283 -12.54534 -12.49075 -12.18472 -12.09214 -11.92870 -11.57524 -11.21874 -11.06540 -10.86635 -9.82260 -9.64101 -8.48297 -6.01371 -0.64425 -0.08988 -0.07690 0.57083 1.51238 1.58343 1.66371 1.93651 2.14468 2.28996 2.63537 2.82006 3.18261 3.24211 3.50966 3.69601 3.88284 3.95970 4.27964 4.29221 4.38076 4.43273 4.64487 4.69415 4.71892 4.79831 5.00031 5.04056 5.26780 5.29634 5.59718 5.72486 5.87661 6.34247 6.37143 6.70028 7.18952 8.40611 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.005512 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.164300 B = 5078.902360 C = 5753.686777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.099 3.901 3 N -0.788 5.788 4 C -0.241 4.241 5 H 0.114 0.886 6 C 0.013 3.987 7 N -0.821 5.821 8 Si 0.983 3.017 9 H -0.261 1.261 10 H -0.273 1.273 11 H -0.261 1.261 12 S 2.492 3.508 13 O -1.016 7.016 14 O -1.009 7.009 15 C -0.670 4.670 16 C 0.147 3.853 17 N -0.468 5.468 18 C 0.153 3.847 19 Cl -0.007 7.007 20 C 0.078 3.922 21 O -0.305 6.305 22 C 0.009 3.991 23 C -0.068 4.068 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.288 0.712 30 H 0.183 0.817 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.141 0.859 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 2.181 2.252 5.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 N -0.609 5.609 4 C -0.395 4.395 5 H 0.131 0.869 6 C -0.202 4.202 7 N -0.458 5.458 8 Si 0.805 3.195 9 H -0.185 1.185 10 H -0.198 1.198 11 H -0.185 1.185 12 S 2.595 3.405 13 O -1.006 7.006 14 O -0.999 6.999 15 C -0.748 4.748 16 C -0.011 4.011 17 N -0.180 5.180 18 C -0.012 4.012 19 Cl 0.021 6.979 20 C 0.028 3.972 21 O -0.217 6.217 22 C -0.085 4.085 23 C -0.095 4.095 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.200 0.800 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.159 0.841 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.782 1.629 0.971 5.144 hybrid contribution 0.279 0.740 0.959 1.243 sum 5.061 2.368 1.930 5.911 Atomic orbital electron populations 1.21926 0.95032 1.02045 1.01445 1.21707 0.95348 0.82069 1.03532 1.54641 1.55554 1.22211 1.28474 1.20272 1.41442 0.93852 0.83937 0.86873 1.26549 0.95820 0.96845 1.01013 1.69999 1.32774 1.16697 1.26348 0.85111 0.79541 0.78833 0.76041 1.18542 1.19791 1.18497 1.14153 0.73825 0.74760 0.77788 1.93283 1.78711 1.71976 1.56593 1.93262 1.86095 1.32952 1.87551 1.33462 1.32670 1.02404 1.06312 1.22375 0.89948 0.94537 0.94226 1.67100 1.03993 1.30577 1.16335 1.21232 0.89389 0.90624 0.99968 1.98369 1.08567 1.94074 1.96849 1.19565 0.89656 0.91452 0.96560 1.86118 1.33280 1.31782 1.70536 1.23573 1.03094 0.83378 0.98477 1.21522 0.90751 1.00214 0.97056 0.92589 0.93856 0.90246 0.91710 0.88304 0.90131 0.80035 0.91612 0.91964 0.84122 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 10.05 71.98 0.72 -4.39 16 2 C 0.10 4.00 5.78 86.38 0.50 4.50 16 3 N -0.79 -34.81 2.94 -343.45 -1.01 -35.82 16 4 C -0.24 -10.66 8.89 84.03 0.75 -9.92 16 5 H 0.11 5.03 7.34 -2.91 -0.02 5.01 16 6 C 0.01 0.55 4.98 84.86 0.42 0.97 16 7 N -0.82 -35.28 11.14 21.65 0.24 -35.04 16 8 Si 0.98 32.63 29.63 68.60 2.03 34.67 16 9 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 10 H -0.27 -8.80 7.11 99.48 0.71 -8.10 16 11 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 12 S 2.49 113.16 5.63 -56.49 -0.32 112.84 16 13 O -1.02 -48.58 16.05 -128.00 -2.05 -50.63 16 14 O -1.01 -49.53 16.18 -128.00 -2.07 -51.60 16 15 C -0.67 -28.31 5.99 22.35 0.13 -28.18 16 16 C 0.15 5.98 10.68 84.68 0.90 6.88 16 17 N -0.47 -18.62 10.34 -186.33 -1.93 -20.54 16 18 C 0.15 5.75 7.29 84.83 0.62 6.37 16 19 Cl -0.01 -0.22 28.66 -2.72 -0.08 -0.30 16 20 C 0.08 2.83 6.70 22.61 0.15 2.98 16 21 O -0.30 -9.32 9.97 -92.79 -0.92 -10.25 16 22 C 0.01 0.20 9.83 113.37 1.11 1.31 16 23 C -0.07 -2.65 8.61 22.55 0.19 -2.46 16 24 H 0.05 1.99 7.98 -2.39 -0.02 1.97 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 27 H 0.06 2.51 7.22 -2.39 -0.02 2.49 16 28 H 0.10 4.16 5.36 -2.39 -0.01 4.15 16 29 H 0.29 11.44 8.31 -92.71 -0.77 10.67 16 30 H 0.18 6.79 7.62 -2.91 -0.02 6.77 16 31 H 0.07 1.41 7.69 -2.39 -0.02 1.39 16 32 H 0.06 1.44 7.71 -2.39 -0.02 1.42 16 33 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.17 5.99 6.09 -2.91 -0.02 5.97 16 Total: -1.00 -57.12 320.40 0.55 -56.58 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 1.14 Total: 22.03 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 5.51 Total: -21.93 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -2.70 Total: -91.40 kcal Atomic # 8 Polarization: -107.43 SS G_CDS: -5.05 Total: -112.48 kcal Atomic # 14 Polarization: 32.63 SS G_CDS: 2.03 Total: 34.67 kcal Atomic # 16 Polarization: 113.16 SS G_CDS: -0.32 Total: 112.84 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -57.12 0.55 -56.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767703527.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.184 kcal (2) G-P(sol) polarization free energy of solvation -57.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds