Wall clock time and date at job start Tue Mar 31 2020 13:05:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35930 * 117.00506 * 2 1
4 4 C 1.39058 * 120.47349 * 0.28457 * 3 2 1
5 5 C 1.38594 * 118.38615 * 180.23579 * 4 3 2
6 6 S 1.76203 * 120.37449 * 179.78264 * 5 4 3
7 7 O 1.42104 * 106.40146 * 156.17850 * 6 5 4
8 8 O 1.42095 * 106.40229 * 23.26107 * 6 5 4
9 9 N 1.65602 * 107.21635 * 269.71684 * 6 5 4
10 10 C 1.46498 * 119.99612 * 65.28001 * 9 6 5
11 11 C 1.53001 * 109.47089 * 164.71987 * 10 9 6
12 12 C 1.50702 * 109.47071 * 179.97438 * 11 10 9
13 13 H 1.07994 * 119.99796 * 0.02562 * 12 11 10
14 14 C 1.37882 * 119.99754 * 179.97438 * 12 11 10
15 15 N 1.31511 * 120.00092 * 0.02562 * 14 12 11
16 16 Si 1.86796 * 119.99822 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.47151 * 89.99995 * 16 14 12
18 18 H 1.48497 * 109.47282 * 210.00479 * 16 14 12
19 19 H 1.48506 * 109.47208 * 330.00059 * 16 14 12
20 20 C 1.38204 * 119.24919 * 359.50457 * 5 4 3
21 21 N 1.31885 * 120.90093 * 0.23373 * 20 5 4
22 22 C 1.31918 * 121.75585 * 0.02562 * 21 20 5
23 23 Cl 1.73597 * 119.66881 * 179.97438 * 22 21 20
24 24 H 1.08997 * 109.47356 * 179.97438 * 1 2 3
25 25 H 1.09004 * 109.46534 * 299.99412 * 1 2 3
26 26 H 1.08994 * 109.47111 * 59.99147 * 1 2 3
27 27 H 1.07996 * 120.80917 * 359.97438 * 4 3 2
28 28 H 0.97001 * 119.99942 * 244.99525 * 9 6 5
29 29 H 1.08996 * 109.46882 * 284.72133 * 10 9 6
30 30 H 1.08999 * 109.47498 * 44.72066 * 10 9 6
31 31 H 1.08996 * 109.47377 * 299.99842 * 11 10 9
32 32 H 1.09005 * 109.46627 * 60.00018 * 11 10 9
33 33 H 0.96997 * 120.00050 * 179.97438 * 15 14 12
34 34 H 1.08008 * 119.55010 * 180.25647 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2111 0.0000
4 6 1.2987 2.3836 0.0060
5 6 1.9725 3.5947 0.0007
6 16 1.0773 5.1124 0.0020
7 8 1.9501 6.0926 0.5469
8 8 -0.2027 4.8227 0.5468
9 7 0.8278 5.5357 -1.5794
10 6 -0.0178 4.7010 -2.4363
11 6 -0.3951 5.4820 -3.6967
12 6 -1.2645 4.6231 -4.5785
13 1 -1.5224 3.6207 -4.2706
14 6 -1.7314 5.1176 -5.7780
15 7 -1.4176 6.3386 -6.1527
16 14 -2.8095 4.0533 -6.8707
17 1 -4.2357 4.2627 -6.5137
18 1 -2.5950 4.4263 -8.2919
19 1 -2.4550 2.6245 -6.6751
20 6 3.3545 3.5985 0.0002
21 7 4.0350 2.4687 0.0001
22 6 3.4323 1.2953 -0.0001
23 17 4.3815 -0.1582 -0.0010
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3632 0.5138 0.8901
26 1 -0.3633 0.5139 -0.8899
27 1 0.2192 2.3513 0.0102
28 1 1.2382 6.3385 -1.9371
29 1 0.5270 3.7996 -2.7169
30 1 -0.9230 4.4249 -1.8955
31 1 -0.9399 6.3834 -3.4161
32 1 0.5101 5.7581 -4.2376
33 1 -1.7458 6.6863 -6.9966
34 1 3.8846 4.5396 0.0003
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000767851853.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:05:11
Heat of formation + Delta-G solvation = -85.114845 kcal
Electronic energy + Delta-G solvation = -22360.589446 eV
Core-core repulsion = 18640.062218 eV
Total energy + Delta-G solvation = -3720.527228 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 320.043 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.08569 -38.63275 -37.25879 -36.99037 -35.87634 -35.56909 -32.88634 -32.80205
-31.12558 -29.27081 -27.90625 -24.62167 -24.45278 -23.64548 -21.30012 -19.87171
-18.80206 -17.88158 -17.65395 -17.31475 -16.60592 -16.40470 -16.35192 -15.64120
-14.87055 -14.64784 -14.50881 -14.23104 -14.08758 -13.94652 -13.33413 -12.68915
-12.28936 -12.19119 -12.12640 -12.03722 -11.93170 -11.88010 -11.77399 -11.46666
-11.40382 -11.19184 -10.72814 -10.61301 -10.39564 -10.13617 -9.70808 -9.37587
-9.12684 -8.89409 -8.49724 -6.16173 -4.20377 -0.02829 0.40487 0.68313
1.40629 2.62707 2.85547 3.16453 3.23298 3.30444 3.32266 3.70219
3.90579 4.10910 4.33694 4.38321 4.51705 4.56331 4.84890 4.87950
5.04794 5.20934 5.23341 5.32593 5.57092 5.73282 6.01070 6.28377
6.56453 6.59203 7.14396 7.22529 7.45459 7.53818 7.80998 8.17710
8.84976 9.44804 10.95136
Molecular weight = 320.04amu
Principal moments of inertia in cm(-1)
A = 0.012402 B = 0.004019 C = 0.003430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2257.177623 B = 6965.933570 C = 8160.794113
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 O -0.296 6.296
3 C 0.078 3.922
4 C -0.051 4.051
5 C -0.690 4.690
6 S 2.699 3.301
7 O -0.959 6.959
8 O -0.951 6.951
9 N -1.105 6.105
10 C 0.116 3.884
11 C 0.018 3.982
12 C -0.527 4.527
13 H 0.058 0.942
14 C 0.061 3.939
15 N -0.891 5.891
16 Si 0.896 3.104
17 H -0.279 1.279
18 H -0.286 1.286
19 H -0.273 1.273
20 C 0.181 3.819
21 N -0.453 5.453
22 C 0.192 3.808
23 Cl -0.007 7.007
24 H 0.111 0.889
25 H 0.063 0.937
26 H 0.067 0.933
27 H 0.168 0.832
28 H 0.420 0.580
29 H 0.051 0.949
30 H 0.070 0.930
31 H 0.028 0.972
32 H 0.025 0.975
33 H 0.263 0.737
34 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.047 -10.031 13.079 17.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.208 6.208
3 C 0.028 3.972
4 C -0.078 4.078
5 C -0.775 4.775
6 S 2.783 3.217
7 O -0.949 6.949
8 O -0.941 6.941
9 N -0.868 5.868
10 C -0.009 4.009
11 C -0.021 4.021
12 C -0.566 4.566
13 H 0.077 0.923
14 C -0.142 4.142
15 N -0.529 5.529
16 Si 0.723 3.277
17 H -0.205 1.205
18 H -0.211 1.211
19 H -0.198 1.198
20 C 0.022 3.978
21 N -0.165 5.165
22 C 0.027 3.973
23 Cl 0.022 6.978
24 H 0.129 0.871
25 H 0.082 0.918
26 H 0.086 0.914
27 H 0.186 0.814
28 H 0.256 0.744
29 H 0.069 0.931
30 H 0.088 0.912
31 H 0.046 0.954
32 H 0.044 0.956
33 H 0.073 0.927
34 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges 7.755 -9.993 13.749 18.683
hybrid contribution -1.035 -0.865 -1.226 1.823
sum 6.720 -10.859 12.523 17.885
Atomic orbital electron populations
1.23347 0.76885 1.05244 1.02498 1.86186 1.22442 1.24148 1.88026
1.19494 0.91509 0.86429 0.99782 1.21496 1.01644 0.89830 0.94841
1.32260 1.08244 1.21496 1.15482 1.01965 0.73755 0.72810 0.73169
1.93589 1.67423 1.56817 1.77039 1.93592 1.38607 1.85034 1.76867
1.55478 1.63516 1.37148 1.30689 1.21715 0.92011 0.93287 0.93848
1.19292 0.97328 0.95889 0.89585 1.21041 1.31407 1.00273 1.03873
0.92337 1.24991 0.96277 0.95078 0.97812 1.69945 1.44991 1.15462
1.22513 0.86538 0.80788 0.80588 0.79752 1.20491 1.21130 1.19824
1.22408 0.89023 0.96262 0.90107 1.67246 1.39671 0.96811 1.12749
1.21265 0.86266 0.90025 0.99793 1.98427 1.72636 1.30765 1.95970
0.87089 0.91810 0.91401 0.81428 0.74367 0.93067 0.91180 0.95377
0.95635 0.92718 0.79658
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.11 9.83 101.05 0.99 1.11 16
2 O -0.30 -3.24 9.97 -19.52 -0.19 -3.43 16
3 C 0.08 0.96 6.70 -39.05 -0.26 0.70 16
4 C -0.05 -0.62 8.61 -39.15 -0.34 -0.95 16
5 C -0.69 -8.78 5.97 -39.46 -0.24 -9.01 16
6 S 2.70 37.42 5.75 -107.50 -0.62 36.80 16
7 O -0.96 -14.48 17.30 -57.17 -0.99 -15.47 16
8 O -0.95 -15.37 16.81 -57.17 -0.96 -16.33 16
9 N -1.11 -16.33 6.00 -10.61 -0.06 -16.39 16
10 C 0.12 2.06 6.17 -4.04 -0.02 2.04 16
11 C 0.02 0.41 5.11 -27.88 -0.14 0.27 16
12 C -0.53 -13.66 9.11 -34.44 -0.31 -13.97 16
13 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16
14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
15 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16
16 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16
17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16
19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
20 C 0.18 2.25 10.68 -17.54 -0.19 2.06 16
21 N -0.45 -6.12 10.34 -10.24 -0.11 -6.22 16
22 C 0.19 2.52 7.29 -17.29 -0.13 2.40 16
23 Cl -0.01 -0.08 28.66 -51.86 -1.49 -1.56 16
24 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16
25 H 0.06 0.42 7.69 -51.93 -0.40 0.02 16
26 H 0.07 0.51 7.71 -51.93 -0.40 0.11 16
27 H 0.17 1.75 6.09 -52.49 -0.32 1.43 16
28 H 0.42 5.69 8.65 -34.47 -0.30 5.39 16
29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
30 H 0.07 1.23 7.74 -51.93 -0.40 0.82 16
31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
34 H 0.19 1.87 7.62 -52.48 -0.40 1.47 16
LS Contribution 328.01 15.07 4.94 4.94
Total: -1.00 -32.23 328.01 -7.94 -40.17
By element:
Atomic # 1 Polarization: 3.84 SS G_CDS: -3.45 Total: 0.39 kcal
Atomic # 6 Polarization: -13.08 SS G_CDS: -0.73 Total: -13.82 kcal
Atomic # 7 Polarization: -47.65 SS G_CDS: 0.57 Total: -47.09 kcal
Atomic # 8 Polarization: -33.09 SS G_CDS: -2.14 Total: -35.23 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal
Atomic # 16 Polarization: 37.42 SS G_CDS: -0.62 Total: 36.80 kcal
Atomic # 17 Polarization: -0.08 SS G_CDS: -1.49 Total: -1.56 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -32.23 -7.94 -40.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000767851853.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.940 kcal
(2) G-P(sol) polarization free energy of solvation -32.231 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.171 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds