Wall clock time and date at job start Tue Mar 31 2020 13:05:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35930 * 117.00506 * 2 1
4 4 C 1.39058 * 120.47349 * 0.28457 * 3 2 1
5 5 C 1.38594 * 118.38615 * 180.23579 * 4 3 2
6 6 S 1.76203 * 120.37449 * 179.78264 * 5 4 3
7 7 O 1.42104 * 106.40146 * 156.17850 * 6 5 4
8 8 O 1.42095 * 106.40229 * 23.26107 * 6 5 4
9 9 N 1.65602 * 107.21635 * 269.71684 * 6 5 4
10 10 C 1.46498 * 119.99612 * 65.28001 * 9 6 5
11 11 C 1.53001 * 109.47089 * 164.71987 * 10 9 6
12 12 C 1.50702 * 109.47071 * 179.97438 * 11 10 9
13 13 H 1.07994 * 119.99796 * 0.02562 * 12 11 10
14 14 C 1.37882 * 119.99754 * 179.97438 * 12 11 10
15 15 N 1.31511 * 120.00092 * 0.02562 * 14 12 11
16 16 Si 1.86796 * 119.99822 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.47151 * 89.99995 * 16 14 12
18 18 H 1.48497 * 109.47282 * 210.00479 * 16 14 12
19 19 H 1.48506 * 109.47208 * 330.00059 * 16 14 12
20 20 C 1.38204 * 119.24919 * 359.50457 * 5 4 3
21 21 N 1.31885 * 120.90093 * 0.23373 * 20 5 4
22 22 C 1.31918 * 121.75585 * 0.02562 * 21 20 5
23 23 Cl 1.73597 * 119.66881 * 179.97438 * 22 21 20
24 24 H 1.08997 * 109.47356 * 179.97438 * 1 2 3
25 25 H 1.09004 * 109.46534 * 299.99412 * 1 2 3
26 26 H 1.08994 * 109.47111 * 59.99147 * 1 2 3
27 27 H 1.07996 * 120.80917 * 359.97438 * 4 3 2
28 28 H 0.97001 * 119.99942 * 244.99525 * 9 6 5
29 29 H 1.08996 * 109.46882 * 284.72133 * 10 9 6
30 30 H 1.08999 * 109.47498 * 44.72066 * 10 9 6
31 31 H 1.08996 * 109.47377 * 299.99842 * 11 10 9
32 32 H 1.09005 * 109.46627 * 60.00018 * 11 10 9
33 33 H 0.96997 * 120.00050 * 179.97438 * 15 14 12
34 34 H 1.08008 * 119.55010 * 180.25647 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2111 0.0000
4 6 1.2987 2.3836 0.0060
5 6 1.9725 3.5947 0.0007
6 16 1.0773 5.1124 0.0020
7 8 1.9501 6.0926 0.5469
8 8 -0.2027 4.8227 0.5468
9 7 0.8278 5.5357 -1.5794
10 6 -0.0178 4.7010 -2.4363
11 6 -0.3951 5.4820 -3.6967
12 6 -1.2645 4.6231 -4.5785
13 1 -1.5224 3.6207 -4.2706
14 6 -1.7314 5.1176 -5.7780
15 7 -1.4176 6.3386 -6.1527
16 14 -2.8095 4.0533 -6.8707
17 1 -4.2357 4.2627 -6.5137
18 1 -2.5950 4.4263 -8.2919
19 1 -2.4550 2.6245 -6.6751
20 6 3.3545 3.5985 0.0002
21 7 4.0350 2.4687 0.0001
22 6 3.4323 1.2953 -0.0001
23 17 4.3815 -0.1582 -0.0010
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3632 0.5138 0.8901
26 1 -0.3633 0.5139 -0.8899
27 1 0.2192 2.3513 0.0102
28 1 1.2382 6.3385 -1.9371
29 1 0.5270 3.7996 -2.7169
30 1 -0.9230 4.4249 -1.8955
31 1 -0.9399 6.3834 -3.4161
32 1 0.5101 5.7581 -4.2376
33 1 -1.7458 6.6863 -6.9966
34 1 3.8846 4.5396 0.0003
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000767851853.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:05:10
Heat of formation + Delta-G solvation = -109.633324 kcal
Electronic energy + Delta-G solvation = -22361.652647 eV
Core-core repulsion = 18640.062218 eV
Total energy + Delta-G solvation = -3721.590429 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 320.043 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.99763 -39.47899 -38.46473 -37.91885 -37.09504 -37.03083 -34.72771 -33.80807
-32.02544 -31.01171 -28.59731 -26.42203 -25.42837 -24.54279 -22.98188 -20.94586
-19.85611 -18.88323 -18.81738 -18.34155 -18.16148 -17.61616 -17.19724 -16.93112
-16.44676 -15.72369 -15.57347 -15.50065 -15.34312 -14.92787 -14.42440 -14.25418
-13.43779 -13.37082 -13.30382 -13.22872 -13.17521 -13.07802 -12.96570 -12.59662
-12.57849 -12.46703 -12.42331 -12.29211 -11.49912 -11.39708 -11.27855 -11.13695
-10.61365 -10.35385 -9.79856 -8.18931 -6.29087 -1.04116 -0.71485 -0.24811
0.46762 1.45345 1.45634 1.55783 1.79092 1.84396 2.09957 2.44203
2.58979 2.94440 3.13527 3.16956 3.50778 3.57943 3.62357 3.97729
4.18160 4.32033 4.34074 4.41121 4.54008 4.71710 4.82661 4.84197
4.97041 5.52245 5.66155 5.79176 5.83071 6.01524 6.19856 6.23321
6.87226 7.40425 8.93019
Molecular weight = 320.04amu
Principal moments of inertia in cm(-1)
A = 0.012402 B = 0.004019 C = 0.003430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2257.177623 B = 6965.933570 C = 8160.794113
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.003 3.997
2 O -0.303 6.303
3 C 0.079 3.921
4 C -0.054 4.054
5 C -0.690 4.690
6 S 2.725 3.275
7 O -0.969 6.969
8 O -0.972 6.972
9 N -1.106 6.106
10 C 0.130 3.870
11 C 0.018 3.982
12 C -0.541 4.541
13 H 0.070 0.930
14 C 0.004 3.996
15 N -0.931 5.931
16 Si 0.961 3.039
17 H -0.274 1.274
18 H -0.287 1.287
19 H -0.260 1.260
20 C 0.176 3.824
21 N -0.467 5.467
22 C 0.177 3.823
23 Cl 0.001 6.999
24 H 0.135 0.865
25 H 0.074 0.926
26 H 0.069 0.931
27 H 0.185 0.815
28 H 0.426 0.574
29 H 0.067 0.933
30 H 0.076 0.924
31 H 0.004 0.996
32 H 0.008 0.992
33 H 0.263 0.737
34 H 0.205 0.795
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.656 -11.634 13.505 19.027
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.091 4.091
2 O -0.215 6.215
3 C 0.028 3.972
4 C -0.081 4.081
5 C -0.777 4.777
6 S 2.811 3.189
7 O -0.959 6.959
8 O -0.962 6.962
9 N -0.868 5.868
10 C 0.004 3.996
11 C -0.021 4.021
12 C -0.580 4.580
13 H 0.088 0.912
14 C -0.195 4.195
15 N -0.570 5.570
16 Si 0.786 3.214
17 H -0.200 1.200
18 H -0.213 1.213
19 H -0.184 1.184
20 C 0.017 3.983
21 N -0.179 5.179
22 C 0.012 3.988
23 Cl 0.029 6.971
24 H 0.153 0.847
25 H 0.093 0.907
26 H 0.088 0.912
27 H 0.202 0.798
28 H 0.262 0.738
29 H 0.086 0.914
30 H 0.094 0.906
31 H 0.022 0.978
32 H 0.026 0.974
33 H 0.072 0.928
34 H 0.222 0.778
Dipole moment (debyes) X Y Z Total
from point charges 7.352 -11.591 14.185 19.739
hybrid contribution -0.888 -0.417 -1.302 1.630
sum 6.464 -12.008 12.883 18.760
Atomic orbital electron populations
1.23683 0.75130 1.07151 1.03141 1.86193 1.24227 1.23403 1.87664
1.19513 0.91372 0.87011 0.99306 1.21744 1.02548 0.89558 0.94289
1.31999 1.08275 1.20842 1.16634 1.01031 0.73049 0.72629 0.72151
1.93575 1.67586 1.57772 1.76953 1.93562 1.40032 1.85459 1.77135
1.55341 1.63398 1.37385 1.30711 1.21380 0.93046 0.93157 0.92011
1.19174 0.95916 0.95401 0.91625 1.21568 1.31167 1.01040 1.04221
0.91168 1.25884 0.97785 0.96244 0.99542 1.70075 1.46592 1.17303
1.23077 0.85506 0.78973 0.79406 0.77526 1.19983 1.21323 1.18419
1.22760 0.89105 0.96821 0.89596 1.67276 1.40092 0.97171 1.13333
1.21515 0.86967 0.90292 1.00014 1.98423 1.72492 1.30245 1.95909
0.84694 0.90698 0.91187 0.79830 0.73791 0.91443 0.90610 0.97769
0.97364 0.92810 0.77828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 0.04 9.83 113.37 1.11 1.15 16
2 O -0.30 -6.02 9.97 -92.76 -0.92 -6.95 16
3 C 0.08 1.81 6.70 22.62 0.15 1.96 16
4 C -0.05 -1.21 8.61 22.55 0.19 -1.02 16
5 C -0.69 -16.41 5.97 22.35 0.13 -16.28 16
6 S 2.72 71.75 5.75 -56.49 -0.32 71.42 16
7 O -0.97 -27.96 17.30 -128.00 -2.21 -30.17 16
8 O -0.97 -29.94 16.81 -128.00 -2.15 -32.09 16
9 N -1.11 -31.58 6.00 -187.50 -1.12 -32.71 16
10 C 0.13 4.46 6.17 86.38 0.53 4.99 16
11 C 0.02 0.82 5.11 29.85 0.15 0.97 16
12 C -0.54 -27.77 9.11 25.60 0.23 -27.54 16
13 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16
14 C 0.00 0.21 5.46 84.66 0.46 0.67 16
15 N -0.93 -53.35 13.29 21.45 0.28 -53.06 16
16 Si 0.96 41.37 29.54 68.60 2.03 43.40 16
17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
18 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16
19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16
20 C 0.18 4.13 10.68 84.68 0.90 5.03 16
21 N -0.47 -12.02 10.34 -186.32 -1.93 -13.94 16
22 C 0.18 4.43 7.29 84.83 0.62 5.05 16
23 Cl 0.00 0.01 28.66 -2.72 -0.08 -0.07 16
24 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16
25 H 0.07 0.80 7.69 -2.38 -0.02 0.78 16
26 H 0.07 0.88 7.71 -2.39 -0.02 0.86 16
27 H 0.18 3.39 6.09 -2.91 -0.02 3.38 16
28 H 0.43 11.31 8.65 -96.74 -0.84 10.47 16
29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
30 H 0.08 2.53 7.74 -2.39 -0.02 2.51 16
31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16
32 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16
33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16
34 H 0.21 3.79 7.62 -2.91 -0.02 3.77 16
Total: -1.00 -67.55 328.01 -1.62 -69.17
By element:
Atomic # 1 Polarization: 9.69 SS G_CDS: 0.32 Total: 10.01 kcal
Atomic # 6 Polarization: -29.51 SS G_CDS: 4.50 Total: -25.02 kcal
Atomic # 7 Polarization: -96.95 SS G_CDS: -2.77 Total: -99.72 kcal
Atomic # 8 Polarization: -63.91 SS G_CDS: -5.29 Total: -69.20 kcal
Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal
Atomic # 16 Polarization: 71.75 SS G_CDS: -0.32 Total: 71.42 kcal
Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal
Total: -67.55 -1.62 -69.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000767851853.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.466 kcal
(2) G-P(sol) polarization free energy of solvation -67.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.015 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds