Wall clock time and date at job start Tue Mar 31 2020 12:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00316 * 2 1 4 4 H 1.48503 * 109.46885 * 269.99932 * 3 2 1 5 5 H 1.48505 * 109.47115 * 29.99661 * 3 2 1 6 6 H 1.48501 * 109.47442 * 149.99741 * 3 2 1 7 7 C 1.37875 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00204 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99718 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47044 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47094 * 179.97438 * 11 10 9 13 13 S 1.65597 * 119.99926 * 165.27799 * 12 11 10 14 14 O 1.42096 * 106.40195 * 178.26439 * 13 12 11 15 15 O 1.42108 * 106.40105 * 311.18495 * 13 12 11 16 16 C 1.76199 * 107.22117 * 64.72196 * 13 12 11 17 17 C 1.33394 * 122.53950 * 269.71612 * 16 13 12 18 18 S 1.75893 * 109.58878 * 179.86775 * 17 16 13 19 19 C 1.75877 * 90.97195 * 0.32802 * 18 17 16 20 20 N 1.48044 * 125.20227 * 179.83620 * 19 18 17 21 21 O 1.21799 * 119.99997 * 179.97438 * 20 19 18 22 22 O 1.21800 * 119.99614 * 359.97438 * 20 19 18 23 23 C 1.33385 * 109.59580 * 359.81292 * 19 18 17 24 24 H 0.97004 * 119.99759 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47804 * 59.99925 * 9 7 2 26 26 H 1.09002 * 109.47061 * 299.99380 * 9 7 2 27 27 H 1.08994 * 109.47357 * 60.00031 * 10 9 7 28 28 H 1.09002 * 109.47067 * 299.99259 * 10 9 7 29 29 H 1.09007 * 109.47007 * 59.99772 * 11 10 9 30 30 H 1.08995 * 109.47080 * 300.00016 * 11 10 9 31 31 H 0.97001 * 119.99790 * 344.99588 * 12 11 10 32 32 H 1.07993 * 125.20504 * 359.97438 * 17 16 13 33 33 H 1.08005 * 122.53973 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5515 -2.6368 0.0009 12 7 6.0397 -4.0180 0.0014 13 16 7.6234 -4.3365 -0.3630 14 8 7.7891 -5.7422 -0.2377 15 8 7.9115 -3.6233 -1.5579 16 6 8.6072 -3.6047 0.9025 17 6 9.0674 -2.3554 0.8213 18 16 10.0005 -1.9757 2.2632 19 6 9.7126 -3.5858 2.9098 20 7 10.2209 -4.0883 4.2063 21 8 9.9628 -5.2240 4.5627 22 8 10.8972 -3.3659 4.9164 23 6 8.9658 -4.2848 2.0537 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6801 0.8911 26 1 3.8752 -0.6806 -0.8889 27 1 3.6584 -3.1503 -0.8892 28 1 3.6578 -3.1507 0.8908 29 1 5.9148 -2.1229 0.8910 30 1 5.9148 -2.1229 -0.8890 31 1 5.4363 -4.7456 0.2192 32 1 8.8924 -1.6797 -0.0028 33 1 8.6641 -5.3042 2.2440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768835301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:06 Heat of formation + Delta-G solvation = -45.986093 kcal Electronic energy + Delta-G solvation = -21732.380550 eV Core-core repulsion = 18015.593778 eV Total energy + Delta-G solvation = -3716.786772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.038 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.49745 -38.92820 -37.62560 -36.96963 -36.34512 -36.21858 -33.37118 -31.68585 -31.33290 -27.28578 -26.98712 -24.89865 -23.02310 -21.73594 -20.64962 -20.33321 -19.39583 -18.79057 -18.06280 -17.78999 -17.45692 -17.34302 -16.89234 -16.06412 -15.04527 -14.88509 -14.40972 -14.28902 -14.16137 -14.03343 -13.10101 -12.64621 -12.56947 -12.52468 -12.40356 -12.33236 -12.07695 -11.93249 -11.89534 -11.60041 -11.44742 -11.29733 -11.05410 -10.47952 -10.25891 -9.99848 -9.85932 -9.79516 -9.58922 -9.33759 -8.65167 -6.14991 -4.14476 -0.94550 -0.22528 -0.00702 0.34358 0.65206 1.13098 1.27344 2.68709 3.21388 3.28947 3.30079 3.32528 3.74019 3.97291 4.32636 4.34093 4.38256 4.75587 4.93682 4.96045 5.17908 5.29757 5.52848 5.70654 5.75100 6.24177 6.38740 6.60862 6.79143 7.08399 7.11596 7.21634 7.65373 8.40919 8.89208 9.46319 10.98324 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.003327 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.498916 B = 8412.751771 C = 9265.048883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.109 4.109 11 C 0.106 3.894 12 N -1.106 6.106 13 S 2.711 3.289 14 O -0.950 6.950 15 O -0.943 6.943 16 C -0.702 4.702 17 C -0.056 4.056 18 S 0.298 5.702 19 C -0.194 4.194 20 N 0.061 4.939 21 O -0.136 6.136 22 O -0.153 6.153 23 C 0.039 3.961 24 H 0.264 0.736 25 H 0.017 0.983 26 H 0.015 0.985 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.423 0.577 32 H 0.209 0.791 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.651 -5.265 2.906 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.148 4.148 11 C -0.019 4.019 12 N -0.869 5.869 13 S 2.793 3.207 14 O -0.940 6.940 15 O -0.933 6.933 16 C -0.797 4.797 17 C -0.196 4.196 18 S 0.562 5.438 19 C -0.395 4.395 20 N 0.583 4.417 21 O -0.355 6.355 22 O -0.368 6.368 23 C 0.005 3.995 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.259 0.741 32 H 0.226 0.774 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 22.550 -3.878 2.126 22.979 hybrid contribution -0.464 -0.295 0.643 0.846 sum 22.086 -4.173 2.769 22.646 Atomic orbital electron populations 1.69909 1.06331 1.27027 1.50669 1.25043 0.94752 0.99226 0.94470 0.86776 0.80240 0.83637 0.78565 1.20170 1.21334 1.19111 1.21080 0.89237 0.94591 1.51338 0.90916 1.19553 0.97566 0.91455 0.96567 1.21684 0.89679 1.00991 1.02429 1.21702 0.99223 0.79440 1.01516 1.55470 1.27080 1.16318 1.88066 1.01791 0.72483 0.73137 0.73270 1.93614 1.85439 1.28456 1.86494 1.93627 1.84200 1.74764 1.40732 1.30351 1.24100 1.05928 1.19314 1.26544 0.93854 0.97893 1.01348 1.84815 1.46168 1.04402 1.08387 1.26172 1.16364 1.03034 0.93913 1.42429 0.98642 1.00508 1.00120 1.94606 1.61623 1.03338 1.75933 1.94597 1.35745 1.55680 1.50757 1.19880 0.89505 1.01750 0.88360 0.92606 0.96426 0.96625 0.91487 0.91775 0.92208 0.90186 0.74070 0.77406 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 2 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 20.46 27.47 -169.99 -4.67 15.79 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 7 C -0.52 -14.02 9.66 -34.44 -0.33 -14.35 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 10 C -0.11 -1.77 5.30 -26.73 -0.14 -1.91 16 11 C 0.11 1.29 6.22 -4.04 -0.03 1.26 16 12 N -1.11 -11.16 6.00 -10.61 -0.06 -11.22 16 13 S 2.71 27.47 5.80 -107.50 -0.62 26.85 16 14 O -0.95 -11.71 17.63 -57.17 -1.01 -12.72 16 15 O -0.94 -11.73 17.12 -57.17 -0.98 -12.71 16 16 C -0.70 -5.99 5.86 -41.21 -0.24 -6.23 16 17 C -0.06 -0.38 10.70 29.04 0.31 -0.07 16 18 S 0.30 2.09 23.14 -107.50 -2.49 -0.40 16 19 C -0.19 -1.91 7.50 -11.31 -0.08 -2.00 16 20 N 0.06 0.72 4.46 33.44 0.15 0.87 16 21 O -0.14 -1.70 18.94 -29.46 -0.56 -2.26 16 22 O -0.15 -1.88 19.08 -29.46 -0.56 -2.45 16 23 C 0.04 0.35 9.35 -41.21 -0.39 -0.03 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 26 H 0.02 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 31 H 0.42 3.70 8.65 -34.47 -0.30 3.40 16 32 H 0.21 0.87 8.00 -52.49 -0.42 0.45 16 33 H 0.18 1.49 7.92 -52.48 -0.42 1.07 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -34.02 326.26 -9.38 -43.40 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -3.16 Total: -2.06 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.11 Total: -21.96 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.86 Total: -36.40 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -3.11 Total: -30.14 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Atomic # 16 Polarization: 29.57 SS G_CDS: -3.11 Total: 26.45 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.02 -9.38 -43.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768835301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.590 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds