Wall clock time and date at job start Tue Mar 31 2020 13:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48506 * 109.46904 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47412 * 300.00177 * 3 2 1 6 6 H 1.48502 * 109.47207 * 60.00233 * 3 2 1 7 7 C 1.38801 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99430 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00539 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00276 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47387 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 O 1.45206 * 109.46777 * 180.02562 * 12 11 10 14 14 C 1.34729 * 116.99812 * 179.97438 * 13 12 11 15 15 O 1.21485 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.47603 * 119.99653 * 180.02562 * 14 13 12 17 17 C 1.39686 * 120.10943 * 359.72521 * 16 14 13 18 18 C 1.38060 * 119.89427 * 179.76523 * 17 16 14 19 19 F 1.35104 * 119.94671 * 180.23025 * 18 17 16 20 20 C 1.38799 * 120.10478 * 0.48820 * 18 17 16 21 21 F 1.35093 * 119.89315 * 179.74053 * 20 18 17 22 22 C 1.38799 * 120.21091 * 359.76671 * 20 18 17 23 23 F 1.35100 * 119.94361 * 179.97438 * 22 20 18 24 24 C 1.38047 * 120.10985 * 359.97438 * 22 20 18 25 25 H 0.96995 * 119.99998 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47035 * 60.00135 * 10 9 7 27 27 H 1.08996 * 109.47323 * 300.00385 * 10 9 7 28 28 H 1.09000 * 109.46866 * 60.00101 * 11 10 9 29 29 H 1.09001 * 109.46611 * 300.00218 * 11 10 9 30 30 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 31 31 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 32 32 H 1.08007 * 120.05207 * 359.97257 * 17 16 14 33 33 H 1.08001 * 120.05586 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9792 -5.3244 -0.0036 12 6 3.1512 -6.3078 -0.0038 13 8 2.6420 -7.6676 -0.0050 14 6 3.5517 -8.6614 -0.0059 15 8 4.7379 -8.3991 -0.0052 16 6 3.1071 -10.0689 -0.0077 17 6 1.7437 -10.3730 -0.0028 18 6 1.3328 -11.6910 -0.0094 19 9 0.0144 -11.9864 -0.0093 20 6 2.2719 -12.7131 -0.0108 21 9 1.8650 -14.0013 -0.0120 22 6 3.6277 -12.4159 -0.0104 23 9 4.5371 -13.4149 -0.0112 24 6 4.0484 -11.1011 -0.0091 25 1 -0.4850 0.8400 0.0004 26 1 3.1243 -3.7322 0.8872 27 1 3.1244 -3.7306 -0.8927 28 1 1.3703 -5.4839 -0.8935 29 1 1.3708 -5.4848 0.8865 30 1 3.7598 -6.1481 0.8863 31 1 3.7599 -6.1474 -0.8937 32 1 1.0123 -9.5784 0.0029 33 1 5.1035 -10.8708 -0.0084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805443377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:16 Heat of formation + Delta-G solvation = -204.368486 kcal Electronic energy + Delta-G solvation = -22510.448174 eV Core-core repulsion = 18213.033078 eV Total energy + Delta-G solvation = -4297.415096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.36926 -49.74328 -49.04257 -40.97806 -39.03589 -36.92151 -33.68353 -32.48817 -31.67149 -31.30406 -27.01425 -25.62993 -24.82510 -23.99299 -21.73963 -21.44219 -19.25666 -18.66904 -18.29095 -17.57962 -17.41426 -17.32084 -16.80945 -16.69533 -16.34313 -16.03102 -15.49936 -15.48643 -14.96354 -14.85986 -14.82789 -14.59805 -13.73635 -13.49675 -13.20230 -13.12091 -12.81350 -12.42561 -12.37118 -12.19041 -11.46893 -11.26885 -11.09535 -11.08610 -10.89719 -10.69439 -10.43732 -9.69173 -9.68381 -9.66506 -9.12632 -8.41067 -6.61734 -6.29239 -4.00631 -0.44087 0.05831 1.71110 2.06967 2.66391 2.69280 3.17654 3.17831 3.26650 3.42026 3.45361 3.49430 3.69305 3.96353 4.15686 4.18013 4.68155 4.71517 4.98393 5.00478 5.02033 5.03581 5.07584 5.25432 5.31821 5.36768 5.67408 5.76304 5.82037 5.99970 6.21123 6.35562 6.57167 7.31562 7.55221 8.30705 9.17469 10.78953 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.033168 B = 0.001944 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.989775 B =14400.945994 C =15219.185997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.099 4.099 12 C 0.074 3.926 13 O -0.346 6.346 14 C 0.511 3.489 15 O -0.492 6.492 16 C -0.072 4.072 17 C -0.076 4.076 18 C 0.091 3.909 19 F -0.111 7.111 20 C 0.065 3.935 21 F -0.109 7.109 22 C 0.090 3.910 23 F -0.112 7.112 24 C -0.073 4.073 25 H 0.268 0.732 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.175 0.825 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.318 -25.444 -0.015 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.137 4.137 12 C -0.001 4.001 13 O -0.263 6.263 14 C 0.354 3.646 15 O -0.381 6.381 16 C -0.074 4.074 17 C -0.095 4.095 18 C 0.070 3.930 19 F -0.089 7.089 20 C 0.044 3.956 21 F -0.088 7.088 22 C 0.070 3.930 23 F -0.091 7.091 24 C -0.092 4.092 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.192 0.808 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.343 -25.485 -0.014 25.852 hybrid contribution 1.797 0.817 0.000 1.974 sum 6.140 -24.668 -0.014 25.421 Atomic orbital electron populations 1.70022 1.05931 1.27365 1.47119 1.25027 0.95109 0.99173 0.94499 0.86088 0.79643 0.81721 0.77931 1.19571 1.20526 1.20533 1.22731 0.94613 0.90608 1.58681 0.90761 1.84667 1.08666 0.99296 1.96888 1.23179 1.03550 0.96213 1.03428 1.21313 0.96347 0.91556 1.04505 1.23418 0.98074 0.75519 1.03076 1.86507 1.39334 1.17185 1.83227 1.20542 0.84400 0.85902 0.73709 1.90894 1.17679 1.84714 1.44771 1.18727 0.92593 0.90910 1.05181 1.21575 0.96628 0.95160 0.96163 1.17147 0.78302 0.92019 1.05498 1.91626 1.29819 1.93817 1.93662 1.17904 0.91355 0.79638 1.06726 1.91601 1.90680 1.33004 1.93482 1.17003 0.84239 0.85832 1.05950 1.91614 1.64864 1.58813 1.93762 1.21224 1.02609 0.88577 0.96799 0.92262 0.91664 0.91657 0.90174 0.90179 0.90664 0.90675 0.80799 0.81217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.22 55.49 0.73 -24.63 16 2 C 0.07 1.97 5.49 -17.43 -0.10 1.88 16 3 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.41 9.50 30.94 0.29 -14.12 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.12 -3.08 21.44 -107.50 -2.30 -5.39 16 10 C -0.12 -2.14 5.67 37.16 0.21 -1.93 16 11 C -0.10 -1.43 5.60 -26.73 -0.15 -1.58 16 12 C 0.07 0.91 5.48 37.16 0.20 1.11 16 13 O -0.35 -3.87 9.47 -40.57 -0.38 -4.25 16 14 C 0.51 5.39 7.89 34.55 0.27 5.67 16 15 O -0.49 -6.35 16.13 -19.25 -0.31 -6.66 16 16 C -0.07 -0.57 5.87 -104.99 -0.62 -1.19 16 17 C -0.08 -0.52 9.59 -39.11 -0.37 -0.90 16 18 C 0.09 0.68 7.29 -39.44 -0.29 0.39 16 19 F -0.11 -0.94 17.17 2.25 0.04 -0.90 16 20 C 0.07 0.51 7.32 -39.17 -0.29 0.22 16 21 F -0.11 -0.98 17.08 2.25 0.04 -0.94 16 22 C 0.09 0.66 7.29 -39.44 -0.29 0.38 16 23 F -0.11 -0.91 17.17 2.25 0.04 -0.87 16 24 C -0.07 -0.51 9.57 -39.11 -0.37 -0.89 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.17 1.02 7.61 -52.48 -0.40 0.62 16 33 H 0.17 1.05 7.65 -52.49 -0.40 0.65 16 LS Contribution 329.33 15.07 4.96 4.96 Total: -1.00 -30.73 329.33 -6.58 -37.31 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -2.88 Total: -3.70 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.49 Total: -10.96 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.73 Total: -24.63 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.69 Total: -10.92 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.12 Total: -2.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.30 Total: -5.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.73 -6.58 -37.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805443377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.059 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds