Wall clock time and date at job start Tue Mar 31 2020 13:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86794 * 120.00369 * 2 1 4 4 H 1.48494 * 109.47376 * 269.99860 * 3 2 1 5 5 H 1.48504 * 109.46865 * 30.00084 * 3 2 1 6 6 H 1.48504 * 109.47371 * 149.99947 * 3 2 1 7 7 C 1.38800 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99881 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00179 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00462 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47651 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47511 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47154 * 179.97438 * 12 11 10 14 14 C 1.34753 * 117.00079 * 180.02562 * 13 12 11 15 15 O 1.21503 * 119.99808 * 359.97438 * 14 13 12 16 16 C 1.47439 * 120.00027 * 180.02562 * 14 13 12 17 17 C 1.39816 * 120.14008 * 359.97438 * 16 14 13 18 18 C 1.37887 * 119.87290 * 180.02562 * 17 16 14 19 19 F 1.35102 * 119.92395 * 179.97438 * 18 17 16 20 20 C 1.38962 * 120.15120 * 359.74337 * 18 17 16 21 21 F 1.35102 * 119.85941 * 180.27602 * 20 18 17 22 22 C 1.38450 * 120.28012 * 0.51508 * 20 18 17 23 23 C 1.38200 * 120.12415 * 359.48215 * 22 20 18 24 24 F 1.35103 * 120.07898 * 180.28071 * 23 22 20 25 25 H 0.97006 * 119.99569 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46928 * 59.99386 * 10 9 7 27 27 H 1.09001 * 109.46679 * 300.00105 * 10 9 7 28 28 H 1.09009 * 109.46977 * 59.99388 * 11 10 9 29 29 H 1.09004 * 109.47024 * 300.00338 * 11 10 9 30 30 H 1.09001 * 109.46808 * 60.00236 * 12 11 10 31 31 H 1.08996 * 109.46966 * 299.99914 * 12 11 10 32 32 H 1.08005 * 120.06062 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.94182 * 179.76877 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5480 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5956 -3.2366 0.0008 12 6 5.8612 -4.7433 0.0012 13 8 7.2934 -4.9823 0.0005 14 6 7.6992 -6.2673 0.0002 15 8 6.8787 -7.1634 0.0010 16 6 9.1388 -6.5857 0.0001 17 6 10.0854 -5.5567 -0.0003 18 6 11.4303 -5.8608 -0.0010 19 9 12.3459 -4.8673 -0.0019 20 6 11.8461 -7.1867 0.0041 21 9 13.1654 -7.4779 0.0090 22 6 10.9142 -8.2106 -0.0009 23 6 9.5633 -7.9190 -0.0001 24 9 8.6548 -8.9189 0.0007 25 1 -0.4850 0.8401 0.0004 26 1 3.6438 -3.4315 -0.8893 27 1 3.6432 -3.4319 0.8907 28 1 6.0386 -2.7896 0.8909 29 1 6.0385 -2.7894 -0.8891 30 1 5.4181 -5.1906 -0.8886 31 1 5.4184 -5.1900 0.8914 32 1 9.7637 -4.5257 -0.0009 33 1 11.2435 -9.2392 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805542487.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:19 Heat of formation + Delta-G solvation = -219.908249 kcal Electronic energy + Delta-G solvation = -22734.624728 eV Core-core repulsion = 18436.535778 eV Total energy + Delta-G solvation = -4298.088951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.048 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.76539 -50.29968 -49.81641 -41.72838 -39.67852 -37.88961 -34.98053 -34.67916 -32.77716 -31.47363 -28.30994 -27.73596 -25.71369 -24.54684 -22.84676 -22.44289 -19.89946 -19.58232 -19.42624 -18.93261 -18.17333 -18.00575 -17.70500 -17.58439 -17.09860 -16.75302 -16.60871 -16.20931 -16.04659 -15.97394 -15.80601 -15.51403 -15.01250 -14.88836 -14.38067 -14.24875 -13.98383 -13.67246 -13.36544 -13.06426 -13.02140 -12.98869 -12.62392 -12.43711 -12.29778 -11.89106 -11.68609 -11.55335 -11.16108 -10.59599 -10.56229 -10.00392 -8.99687 -8.51638 -6.23559 -1.06126 -0.47258 1.01425 1.01934 1.29510 1.33714 1.49261 1.77951 1.97684 2.25091 2.26309 2.59023 2.66371 2.86517 2.98559 3.03391 3.29181 3.65154 3.84538 3.93063 4.05894 4.11840 4.19130 4.29650 4.34736 4.45222 4.58297 4.61443 4.66302 5.00333 5.03335 5.25632 5.29283 5.69760 6.10974 6.42494 6.92007 8.61358 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.002175 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.476957 B =12870.436315 C =13936.159918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.225 1.225 7 C -0.525 4.525 8 H 0.051 0.949 9 S -0.205 6.205 10 C -0.075 4.075 11 C -0.088 4.088 12 C 0.079 3.921 13 O -0.342 6.342 14 C 0.511 3.489 15 O -0.518 6.518 16 C -0.153 4.153 17 C -0.025 4.025 18 C 0.048 3.952 19 F -0.122 7.122 20 C 0.142 3.858 21 F -0.112 7.112 22 C -0.157 4.157 23 C 0.181 3.819 24 F -0.113 7.113 25 H 0.277 0.723 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.188 0.812 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.435 -15.468 0.109 32.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.169 4.169 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.148 1.148 7 C -0.673 4.673 8 H 0.069 0.931 9 S 0.023 5.977 10 C -0.224 4.224 11 C -0.126 4.126 12 C 0.004 3.996 13 O -0.259 6.259 14 C 0.356 3.644 15 O -0.408 6.408 16 C -0.155 4.155 17 C -0.044 4.044 18 C 0.027 3.973 19 F -0.100 7.100 20 C 0.122 3.878 21 F -0.090 7.090 22 C -0.176 4.176 23 C 0.161 3.839 24 F -0.090 7.090 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.205 0.795 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 28.744 -14.737 0.115 32.302 hybrid contribution -1.463 -0.569 -0.047 1.571 sum 27.281 -15.307 0.068 31.282 Atomic orbital electron populations 1.70046 1.07740 1.29141 1.49125 1.25816 0.95443 1.02916 0.92737 0.85698 0.80839 0.78460 0.80258 1.18569 1.18940 1.14842 1.22360 0.90195 0.96289 1.58432 0.93073 1.83792 1.07356 1.08988 1.97590 1.22979 0.99006 0.96099 1.04295 1.21162 0.92813 0.93270 1.05403 1.23125 0.75982 0.96982 1.03502 1.86465 1.28746 1.27077 1.83575 1.20851 0.89243 0.81310 0.73000 1.90938 1.55518 1.48274 1.46120 1.18935 0.90423 0.92863 1.13328 1.21339 0.88722 1.01883 0.92417 1.17455 0.87169 0.83851 1.08803 1.91600 1.65075 1.59282 1.94089 1.17552 0.78892 0.91411 0.99991 1.91620 1.30567 1.93889 1.92966 1.21033 0.88731 1.02505 1.05352 1.17377 0.86649 0.83097 0.96788 1.91651 1.66116 1.58818 1.92463 0.91408 0.91051 0.91008 0.89274 0.89255 0.90472 0.90456 0.79484 0.78512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.36 13.97 21.65 0.30 -56.06 16 2 C 0.04 2.06 5.50 84.86 0.47 2.53 16 3 Si 0.93 43.12 27.74 68.60 1.90 45.02 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.23 -9.95 6.74 99.48 0.67 -9.28 16 7 C -0.53 -30.36 10.04 67.95 0.68 -29.68 16 8 H 0.05 3.23 8.03 -2.91 -0.02 3.20 16 9 S -0.21 -9.42 19.41 -56.49 -1.10 -10.52 16 10 C -0.08 -2.66 5.67 71.98 0.41 -2.25 16 11 C -0.09 -2.28 5.60 30.59 0.17 -2.11 16 12 C 0.08 1.85 5.48 71.98 0.39 2.24 16 13 O -0.34 -7.28 9.47 -56.63 -0.54 -7.82 16 14 C 0.51 11.25 7.89 70.25 0.55 11.80 16 15 O -0.52 -14.73 15.12 19.83 0.30 -14.43 16 16 C -0.15 -2.41 5.88 -20.06 -0.12 -2.52 16 17 C -0.02 -0.29 9.59 22.57 0.22 -0.07 16 18 C 0.05 0.55 7.29 22.36 0.16 0.71 16 19 F -0.12 -1.71 17.17 44.97 0.77 -0.94 16 20 C 0.14 1.45 7.31 22.49 0.16 1.62 16 21 F -0.11 -1.30 17.17 44.97 0.77 -0.53 16 22 C -0.16 -1.35 9.99 22.31 0.22 -1.13 16 23 C 0.18 2.58 7.28 22.67 0.17 2.75 16 24 F -0.11 -2.16 15.54 44.97 0.70 -1.46 16 25 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.19 1.68 7.61 -2.91 -0.02 1.66 16 33 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -68.72 324.91 7.73 -60.99 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.13 Total: 1.85 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 3.49 Total: -16.11 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.30 Total: -56.06 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.24 Total: -22.25 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 2.24 Total: -2.92 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.90 Total: 45.02 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.10 Total: -10.52 kcal Total: -68.72 7.73 -60.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805542487.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.923 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds