Wall clock time and date at job start Tue Mar 31 2020 12:47:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86796 * 120.00068 * 2 1
4 4 H 1.48508 * 109.46824 * 269.99383 * 3 2 1
5 5 H 1.48497 * 109.47069 * 29.99213 * 3 2 1
6 6 H 1.48503 * 109.47348 * 149.99454 * 3 2 1
7 7 C 1.37882 * 119.99707 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99908 * 180.02562 * 7 2 1
9 9 C 1.50692 * 120.00514 * 0.02562 * 7 2 1
10 10 O 1.42893 * 109.47547 * 179.97438 * 9 7 2
11 11 C 1.42906 * 114.00516 * 179.97438 * 10 9 7
12 12 C 1.52990 * 109.47544 * 180.02562 * 11 10 9
13 13 O 1.45201 * 109.47239 * 64.99972 * 12 11 10
14 14 C 1.34740 * 117.00334 * 180.02562 * 13 12 11
15 15 O 1.21504 * 119.99859 * 0.02562 * 14 13 12
16 16 C 1.47498 * 120.00341 * 180.02562 * 14 13 12
17 17 C 1.39765 * 120.14769 * 359.97438 * 16 14 13
18 18 C 1.37975 * 119.86077 * 180.02562 * 17 16 14
19 19 F 1.35103 * 119.91815 * 180.02562 * 18 17 16
20 20 C 1.38812 * 120.15944 * 0.02562 * 18 17 16
21 21 Cl 1.73608 * 119.84802 * 179.97438 * 20 18 17
22 22 C 1.38326 * 120.30494 * 0.02562 * 20 18 17
23 23 C 1.38253 * 120.13818 * 359.97438 * 22 20 18
24 24 F 1.35100 * 120.08323 * 180.02562 * 23 22 20
25 25 H 0.96992 * 120.00402 * 0.02562 * 1 2 3
26 26 H 1.09005 * 109.46948 * 59.99665 * 9 7 2
27 27 H 1.08996 * 109.47444 * 300.00363 * 9 7 2
28 28 H 1.09007 * 109.46542 * 60.00051 * 11 10 9
29 29 H 1.08998 * 109.46682 * 300.00561 * 11 10 9
30 30 H 1.09003 * 109.47537 * 305.00090 * 12 11 10
31 31 H 1.08996 * 109.47548 * 185.00104 * 12 11 10
32 32 H 1.08002 * 120.06870 * 0.30492 * 17 16 14
33 33 H 1.08006 * 119.93092 * 179.97438 * 22 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4002
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4402 0.7002
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2511 -2.4992 0.0005
10 8 2.1796 -3.5853 0.0005
11 6 1.5651 -4.8755 0.0011
12 6 2.6479 -5.9562 0.0017
13 8 3.3991 -5.8881 1.2424
14 6 4.3977 -6.7784 1.4027
15 8 4.6345 -7.5893 0.5295
16 6 5.2032 -6.7687 2.6383
17 6 4.9338 -5.8370 3.6446
18 6 5.6914 -5.8328 4.7977
19 9 5.4316 -4.9330 5.7714
20 6 6.7198 -6.7510 4.9598
21 17 7.6684 -6.7382 6.4138
22 6 6.9930 -7.6755 3.9677
23 6 6.2417 -7.6907 2.8072
24 9 6.5091 -8.5944 1.8393
25 1 -0.4850 0.8399 -0.0004
26 1 0.6247 -2.5571 -0.8897
27 1 0.6240 -2.5568 0.8902
28 1 0.9446 -4.9827 -0.8887
29 1 0.9452 -4.9822 0.8913
30 1 3.3216 -5.7961 -0.8401
31 1 2.1820 -6.9376 -0.0874
32 1 4.1314 -5.1246 3.5217
33 1 7.7948 -8.3868 4.1000
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000815240117.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:18
Heat of formation + Delta-G solvation = -200.400873 kcal
Electronic energy + Delta-G solvation = -23440.176027 eV
Core-core repulsion = 19128.516484 eV
Total energy + Delta-G solvation = -4311.659543 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.046 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-49.41544 -49.37949 -40.64718 -39.13579 -37.26859 -37.01877 -36.13589 -32.83151
-32.22614 -30.69869 -30.06066 -27.01550 -25.25614 -23.74568 -22.55103 -22.22741
-21.30301 -18.84009 -18.24020 -17.88091 -17.10648 -16.84257 -16.61909 -16.30934
-16.21393 -15.81526 -15.34038 -15.12495 -14.77954 -14.71687 -14.42296 -14.21276
-13.67379 -13.38384 -13.25325 -13.07302 -12.71944 -12.30600 -12.01986 -11.80886
-11.65022 -11.50658 -11.03036 -10.89877 -10.84182 -10.63673 -10.50005 -10.09243
-9.77791 -9.17898 -9.17038 -8.92935 -8.26323 -6.15415 -4.17369 -0.25270
0.31064 1.25301 1.97385 2.37167 2.87574 3.28256 3.33517 3.38503
3.38746 3.48543 3.86676 4.19441 4.28562 4.36646 4.65217 4.75777
4.95203 5.06231 5.11776 5.21407 5.23413 5.36829 5.41660 5.77655
5.84774 5.92833 5.97884 6.33878 7.00050 7.34790 7.54807 7.74289
8.08092 8.46632 8.94942 9.47703 10.96102
Molecular weight = 320.05amu
Principal moments of inertia in cm(-1)
A = 0.012963 B = 0.003048 C = 0.002588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2159.428230 B = 9182.735089 C =10817.911767
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.057 3.943
3 Si 0.908 3.092
4 H -0.278 1.278
5 H -0.285 1.285
6 H -0.271 1.271
7 C -0.516 4.516
8 H 0.067 0.933
9 C 0.195 3.805
10 O -0.391 6.391
11 C 0.061 3.939
12 C 0.076 3.924
13 O -0.333 6.333
14 C 0.508 3.492
15 O -0.491 6.491
16 C -0.126 4.126
17 C -0.051 4.051
18 C 0.092 3.908
19 F -0.113 7.113
20 C -0.019 4.019
21 Cl -0.026 7.026
22 C -0.134 4.134
23 C 0.169 3.831
24 F -0.102 7.102
25 H 0.265 0.735
26 H 0.006 0.994
27 H 0.008 0.992
28 H 0.066 0.934
29 H 0.051 0.949
30 H 0.081 0.919
31 H 0.082 0.918
32 H 0.178 0.822
33 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.100 -17.485 10.555 23.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.144 4.144
3 Si 0.735 3.265
4 H -0.204 1.204
5 H -0.210 1.210
6 H -0.196 1.196
7 C -0.554 4.554
8 H 0.085 0.915
9 C 0.121 3.879
10 O -0.311 6.311
11 C -0.017 4.017
12 C 0.003 3.997
13 O -0.248 6.248
14 C 0.351 3.649
15 O -0.380 6.380
16 C -0.128 4.128
17 C -0.070 4.070
18 C 0.072 3.928
19 F -0.092 7.092
20 C -0.047 4.047
21 Cl 0.003 6.997
22 C -0.154 4.154
23 C 0.148 3.852
24 F -0.079 7.079
25 H 0.074 0.926
26 H 0.024 0.976
27 H 0.026 0.974
28 H 0.084 0.916
29 H 0.070 0.930
30 H 0.099 0.901
31 H 0.100 0.900
32 H 0.196 0.804
33 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges 12.258 -17.546 10.398 23.796
hybrid contribution 0.085 0.822 -0.009 0.827
sum 12.343 -16.724 10.388 23.237
Atomic orbital electron populations
1.69951 1.06115 1.27267 1.50409 1.24944 0.94982 0.99463 0.95046
0.86331 0.79696 0.82181 0.78272 1.20440 1.21031 1.19572 1.21040
0.94102 0.89270 1.51036 0.91497 1.20241 0.88716 0.83434 0.95552
1.87917 1.35366 1.12592 1.95247 1.22338 0.93120 0.85427 1.00808
1.23332 0.93608 0.99173 0.83605 1.86620 1.42824 1.53167 1.42217
1.20494 0.79447 0.79082 0.85879 1.90912 1.67506 1.37428 1.42188
1.19132 0.98632 0.99598 0.95440 1.21513 0.98783 0.97269 0.89423
1.17169 0.96725 0.90828 0.88128 1.91621 1.93043 1.64487 1.60003
1.20961 0.94942 0.97427 0.91383 1.98433 1.70063 1.97781 1.33375
1.20798 1.02352 1.00914 0.91292 1.17357 0.93615 0.87910 0.86324
1.91658 1.92361 1.63580 1.60344 0.92586 0.97587 0.97444 0.91639
0.93044 0.90079 0.90015 0.80442 0.81617
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
3 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16
4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
7 C -0.52 -14.95 9.43 -34.44 -0.32 -15.27 16
8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16
9 C 0.19 5.18 5.69 36.00 0.20 5.38 16
10 O -0.39 -9.09 10.30 -38.79 -0.40 -9.49 16
11 C 0.06 1.04 6.33 37.15 0.24 1.28 16
12 C 0.08 1.12 5.85 37.15 0.22 1.34 16
13 O -0.33 -5.11 9.44 -43.38 -0.41 -5.52 16
14 C 0.51 7.27 7.89 34.50 0.27 7.54 16
15 O -0.49 -7.95 15.13 -19.27 -0.29 -8.24 16
16 C -0.13 -1.45 5.88 -104.93 -0.62 -2.07 16
17 C -0.05 -0.53 9.59 -39.11 -0.37 -0.91 16
18 C 0.09 0.91 7.26 -39.47 -0.29 0.62 16
19 F -0.11 -1.23 16.82 2.25 0.04 -1.19 16
20 C -0.02 -0.16 6.33 -39.34 -0.25 -0.41 16
21 Cl -0.03 -0.21 28.60 -51.86 -1.48 -1.69 16
22 C -0.13 -1.05 9.79 -39.54 -0.39 -1.43 16
23 C 0.17 1.73 7.28 -38.96 -0.28 1.44 16
24 F -0.10 -1.20 15.54 2.25 0.04 -1.16 16
25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16
28 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16
29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
32 H 0.18 1.86 7.61 -52.49 -0.40 1.46 16
33 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16
LS Contribution 327.39 15.07 4.93 4.93
Total: -1.00 -32.00 327.39 -6.45 -38.45
By element:
Atomic # 1 Polarization: -3.06 SS G_CDS: -2.90 Total: -5.97 kcal
Atomic # 6 Polarization: 0.72 SS G_CDS: -1.69 Total: -0.97 kcal
Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.70 kcal
Atomic # 8 Polarization: -22.15 SS G_CDS: -1.10 Total: -23.25 kcal
Atomic # 9 Polarization: -2.43 SS G_CDS: 0.07 Total: -2.36 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Atomic # 17 Polarization: -0.21 SS G_CDS: -1.48 Total: -1.69 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -32.00 -6.45 -38.45 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815240117.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -161.948 kcal
(2) G-P(sol) polarization free energy of solvation -31.998 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal
(6) G-S(sol) free energy of system = (1) + (5) -200.401 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds