Wall clock time and date at job start Tue Mar 31 2020 12:47:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86796 * 120.00068 * 2 1
4 4 H 1.48508 * 109.46824 * 269.99383 * 3 2 1
5 5 H 1.48497 * 109.47069 * 29.99213 * 3 2 1
6 6 H 1.48503 * 109.47348 * 149.99454 * 3 2 1
7 7 C 1.37882 * 119.99707 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99908 * 180.02562 * 7 2 1
9 9 C 1.50692 * 120.00514 * 0.02562 * 7 2 1
10 10 O 1.42893 * 109.47547 * 179.97438 * 9 7 2
11 11 C 1.42906 * 114.00516 * 179.97438 * 10 9 7
12 12 C 1.52990 * 109.47544 * 180.02562 * 11 10 9
13 13 O 1.45201 * 109.47239 * 64.99972 * 12 11 10
14 14 C 1.34740 * 117.00334 * 180.02562 * 13 12 11
15 15 O 1.21504 * 119.99859 * 0.02562 * 14 13 12
16 16 C 1.47498 * 120.00341 * 180.02562 * 14 13 12
17 17 C 1.39765 * 120.14769 * 359.97438 * 16 14 13
18 18 C 1.37975 * 119.86077 * 180.02562 * 17 16 14
19 19 F 1.35103 * 119.91815 * 180.02562 * 18 17 16
20 20 C 1.38812 * 120.15944 * 0.02562 * 18 17 16
21 21 Cl 1.73608 * 119.84802 * 179.97438 * 20 18 17
22 22 C 1.38326 * 120.30494 * 0.02562 * 20 18 17
23 23 C 1.38253 * 120.13818 * 359.97438 * 22 20 18
24 24 F 1.35100 * 120.08323 * 180.02562 * 23 22 20
25 25 H 0.96992 * 120.00402 * 0.02562 * 1 2 3
26 26 H 1.09005 * 109.46948 * 59.99665 * 9 7 2
27 27 H 1.08996 * 109.47444 * 300.00363 * 9 7 2
28 28 H 1.09007 * 109.46542 * 60.00051 * 11 10 9
29 29 H 1.08998 * 109.46682 * 300.00561 * 11 10 9
30 30 H 1.09003 * 109.47537 * 305.00090 * 12 11 10
31 31 H 1.08996 * 109.47548 * 185.00104 * 12 11 10
32 32 H 1.08002 * 120.06870 * 0.30492 * 17 16 14
33 33 H 1.08006 * 119.93092 * 179.97438 * 22 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4002
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4402 0.7002
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2511 -2.4992 0.0005
10 8 2.1796 -3.5853 0.0005
11 6 1.5651 -4.8755 0.0011
12 6 2.6479 -5.9562 0.0017
13 8 3.3991 -5.8881 1.2424
14 6 4.3977 -6.7784 1.4027
15 8 4.6345 -7.5893 0.5295
16 6 5.2032 -6.7687 2.6383
17 6 4.9338 -5.8370 3.6446
18 6 5.6914 -5.8328 4.7977
19 9 5.4316 -4.9330 5.7714
20 6 6.7198 -6.7510 4.9598
21 17 7.6684 -6.7382 6.4138
22 6 6.9930 -7.6755 3.9677
23 6 6.2417 -7.6907 2.8072
24 9 6.5091 -8.5944 1.8393
25 1 -0.4850 0.8399 -0.0004
26 1 0.6247 -2.5571 -0.8897
27 1 0.6240 -2.5568 0.8902
28 1 0.9446 -4.9827 -0.8887
29 1 0.9452 -4.9822 0.8913
30 1 3.3216 -5.7961 -0.8401
31 1 2.1820 -6.9376 -0.0874
32 1 4.1314 -5.1246 3.5217
33 1 7.7948 -8.3868 4.1000
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815240117.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:17
Heat of formation + Delta-G solvation = -218.418543 kcal
Electronic energy + Delta-G solvation = -23440.957332 eV
Core-core repulsion = 19128.516484 eV
Total energy + Delta-G solvation = -4312.440848 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.046 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-50.27782 -50.20887 -41.74577 -39.99785 -38.74697 -37.85285 -37.49791 -34.94814
-33.11248 -31.63493 -31.36220 -29.03836 -26.22232 -24.67628 -24.46893 -23.53019
-22.38552 -19.78120 -19.12746 -18.80240 -18.59137 -18.10810 -18.03720 -17.40974
-17.34276 -16.96171 -16.64314 -16.36242 -16.24441 -15.91176 -15.58064 -15.24164
-15.00683 -14.47461 -14.27081 -14.06350 -14.05674 -13.72351 -13.24788 -13.12709
-12.93324 -12.71050 -12.60438 -12.48076 -12.32599 -12.05163 -11.82001 -11.76399
-11.28072 -10.89567 -10.52353 -10.26912 -9.98466 -8.32257 -6.44113 -1.09661
-0.45191 0.54094 1.00739 1.31774 1.41081 1.43140 1.55254 1.97693
2.34559 2.58999 2.68242 3.02059 3.03690 3.08725 3.31229 3.52682
3.89493 3.99728 4.09661 4.13344 4.27544 4.39543 4.46383 4.55118
4.60810 4.67388 4.86303 5.13083 5.16873 5.20385 5.54696 5.95529
6.40938 6.50969 6.79844 7.27580 8.79851
Molecular weight = 320.05amu
Principal moments of inertia in cm(-1)
A = 0.012963 B = 0.003048 C = 0.002588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2159.428230 B = 9182.735089 C =10817.911767
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.009 3.991
3 Si 0.980 3.020
4 H -0.268 1.268
5 H -0.274 1.274
6 H -0.265 1.265
7 C -0.550 4.550
8 H 0.060 0.940
9 C 0.208 3.792
10 O -0.409 6.409
11 C 0.053 3.947
12 C 0.079 3.921
13 O -0.346 6.346
14 C 0.509 3.491
15 O -0.515 6.515
16 C -0.140 4.140
17 C -0.050 4.050
18 C 0.088 3.912
19 F -0.120 7.120
20 C -0.011 4.011
21 Cl -0.013 7.013
22 C -0.111 4.111
23 C 0.166 3.834
24 F -0.111 7.111
25 H 0.271 0.729
26 H -0.008 1.008
27 H -0.009 1.009
28 H 0.084 0.916
29 H 0.060 0.940
30 H 0.076 0.924
31 H 0.114 0.886
32 H 0.172 0.828
33 H 0.199 0.801
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.523 -17.696 11.384 25.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.190 4.190
3 Si 0.803 3.197
4 H -0.194 1.194
5 H -0.199 1.199
6 H -0.190 1.190
7 C -0.588 4.588
8 H 0.078 0.922
9 C 0.134 3.866
10 O -0.329 6.329
11 C -0.024 4.024
12 C 0.006 3.994
13 O -0.262 6.262
14 C 0.354 3.646
15 O -0.405 6.405
16 C -0.142 4.142
17 C -0.069 4.069
18 C 0.068 3.932
19 F -0.098 7.098
20 C -0.039 4.039
21 Cl 0.017 6.983
22 C -0.130 4.130
23 C 0.146 3.854
24 F -0.089 7.089
25 H 0.080 0.920
26 H 0.010 0.990
27 H 0.009 0.991
28 H 0.102 0.898
29 H 0.078 0.922
30 H 0.094 0.906
31 H 0.132 0.868
32 H 0.190 0.810
33 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges 13.679 -17.780 11.233 25.088
hybrid contribution -0.349 0.791 -0.206 0.889
sum 13.330 -16.988 11.027 24.247
Atomic orbital electron populations
1.70048 1.07647 1.28673 1.50439 1.25906 0.95938 1.03229 0.93931
0.85229 0.78427 0.77244 0.78813 1.19358 1.19892 1.18955 1.21389
0.94100 0.90948 1.52317 0.92154 1.19858 0.88524 0.84303 0.93949
1.87859 1.35512 1.14185 1.95354 1.22667 0.94384 0.83221 1.02129
1.23320 0.93078 0.99607 0.83390 1.86611 1.43398 1.53819 1.42368
1.20883 0.78989 0.78255 0.86457 1.90891 1.68131 1.38277 1.43207
1.19026 0.99384 1.01030 0.94758 1.21376 0.98911 0.97050 0.89579
1.17197 0.97148 0.91115 0.87767 1.91606 1.93178 1.64854 1.60182
1.21007 0.94315 0.96773 0.91850 1.98447 1.69553 1.97687 1.32652
1.21026 1.01942 1.00502 0.89554 1.17477 0.93613 0.87489 0.86839
1.91637 1.92410 1.63883 1.60951 0.92006 0.99035 0.99112 0.89769
0.92227 0.90599 0.86800 0.81029 0.78393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16
2 C 0.01 0.50 5.46 84.66 0.46 0.96 16
3 Si 0.98 43.90 29.54 68.60 2.03 45.93 16
4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16
6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
7 C -0.55 -32.36 9.43 25.60 0.24 -32.11 16
8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16
9 C 0.21 11.39 5.69 71.23 0.41 11.80 16
10 O -0.41 -19.37 10.30 -145.57 -1.50 -20.87 16
11 C 0.05 1.80 6.33 71.98 0.46 2.26 16
12 C 0.08 2.29 5.85 71.98 0.42 2.72 16
13 O -0.35 -10.67 9.44 -53.84 -0.51 -11.17 16
14 C 0.51 14.58 7.89 70.26 0.55 15.13 16
15 O -0.51 -16.58 15.13 19.82 0.30 -16.28 16
16 C -0.14 -3.18 5.88 -20.07 -0.12 -3.30 16
17 C -0.05 -1.04 9.59 22.58 0.22 -0.82 16
18 C 0.09 1.65 7.26 22.34 0.16 1.81 16
19 F -0.12 -2.50 16.82 44.97 0.76 -1.75 16
20 C -0.01 -0.17 6.33 22.43 0.14 -0.03 16
21 Cl -0.01 -0.17 28.60 -2.72 -0.08 -0.25 16
22 C -0.11 -1.45 9.79 22.29 0.22 -1.24 16
23 C 0.17 3.18 7.28 22.67 0.17 3.35 16
24 F -0.11 -2.49 15.54 44.97 0.70 -1.79 16
25 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16
26 H -0.01 -0.46 8.14 -2.38 -0.02 -0.47 16
27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16
28 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16
29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16
31 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16
32 H 0.17 3.71 7.61 -2.91 -0.02 3.69 16
33 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16
Total: -1.00 -68.64 327.39 6.47 -62.17
By element:
Atomic # 1 Polarization: -3.00 SS G_CDS: 1.17 Total: -1.84 kcal
Atomic # 6 Polarization: -2.80 SS G_CDS: 3.33 Total: 0.53 kcal
Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal
Atomic # 8 Polarization: -46.62 SS G_CDS: -1.71 Total: -48.33 kcal
Atomic # 9 Polarization: -5.00 SS G_CDS: 1.46 Total: -3.54 kcal
Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal
Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal
Total: -68.64 6.47 -62.17 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815240117.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -156.252 kcal
(2) G-P(sol) polarization free energy of solvation -68.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.166 kcal
(6) G-S(sol) free energy of system = (1) + (5) -218.419 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds