Wall clock time and date at job start Tue Mar 31 2020 12:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31396 * 1 3 3 Si 1.86802 * 119.99984 * 2 1 4 4 H 1.48495 * 109.46886 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47151 * 299.99942 * 3 2 1 6 6 H 1.48508 * 109.47026 * 59.99814 * 3 2 1 7 7 C 1.38853 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99735 * 180.02562 * 7 2 1 9 9 O 1.34796 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.34905 * 116.99843 * 180.02562 * 9 7 2 11 11 O 1.21669 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.41822 * 119.99848 * 179.97438 * 10 9 7 13 13 C 1.35053 * 119.99795 * 173.25686 * 12 10 9 14 14 C 1.47078 * 120.00046 * 349.71700 * 13 12 10 15 15 C 1.39916 * 120.18172 * 310.16221 * 14 13 12 16 16 C 1.37823 * 119.83362 * 179.72918 * 15 14 13 17 17 C 1.50696 * 119.89765 * 180.23330 * 16 15 14 18 18 F 1.39896 * 109.47293 * 89.99340 * 17 16 15 19 19 F 1.39899 * 109.47227 * 209.99883 * 17 16 15 20 20 F 1.39906 * 109.46811 * 329.99531 * 17 16 15 21 21 C 1.38470 * 120.21068 * 0.24822 * 16 15 14 22 22 C 1.38330 * 120.37362 * 0.02562 * 21 16 15 23 23 C 1.38068 * 120.16091 * 359.97364 * 22 21 16 24 24 Cl 1.73600 * 120.10472 * 180.02562 * 23 22 21 25 25 H 0.97004 * 120.00314 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00103 * 353.26268 * 12 10 9 27 27 H 1.08002 * 120.00331 * 169.71617 * 13 12 10 28 28 H 1.08000 * 120.08319 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.81224 * 180.02562 * 21 16 15 30 30 H 1.08002 * 119.91840 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7079 1.3464 0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8891 2.3965 1.2125 7 6 2.0082 -1.2025 -0.0005 8 1 3.0882 -1.2025 -0.0001 9 8 1.3342 -2.3699 -0.0005 10 6 2.0689 -3.5013 -0.0005 11 8 3.2839 -3.4376 -0.0010 12 6 1.4250 -4.7649 0.0000 13 6 2.1533 -5.8939 -0.1373 14 6 3.5732 -5.8121 -0.5120 15 6 3.9680 -5.0367 -1.6078 16 6 5.3011 -4.9607 -1.9492 17 6 5.7285 -4.1218 -3.1259 18 9 6.0048 -2.8200 -2.6947 19 9 6.8769 -4.6762 -3.7012 20 9 4.7004 -4.0906 -4.0742 21 6 6.2491 -5.6529 -1.2146 22 6 5.8678 -6.4265 -0.1331 23 6 4.5365 -6.5136 0.2225 24 17 4.0597 -7.4844 1.5804 25 1 -0.4851 0.8401 -0.0004 26 1 0.3523 -4.8243 0.1102 27 1 1.6932 -6.8569 0.0280 28 1 3.2305 -4.4954 -2.1817 29 1 7.2920 -5.5884 -1.4875 30 1 6.6132 -6.9636 0.4345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825212166.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:10 Heat of formation + Delta-G solvation = -183.585681 kcal Electronic energy + Delta-G solvation = -24493.634857 eV Core-core repulsion = 20059.244170 eV Total energy + Delta-G solvation = -4434.390687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.021 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.97559 -47.53111 -47.38012 -39.85726 -38.74049 -36.50367 -35.71483 -33.49037 -32.31142 -31.58916 -29.93578 -25.97719 -25.80961 -24.07068 -22.25525 -21.56326 -19.18385 -18.31099 -18.27040 -18.01259 -17.80264 -16.68717 -16.52935 -15.53610 -14.96327 -14.62117 -14.49952 -14.32386 -14.22732 -14.00585 -13.86077 -13.82235 -13.58717 -13.58093 -13.11162 -12.99923 -12.90051 -12.25293 -11.74985 -11.70549 -11.52590 -11.38050 -11.31751 -10.78513 -10.57675 -10.46482 -9.93063 -9.83925 -9.14885 -8.86883 -8.67433 -8.04418 -6.57717 -4.15155 0.72229 1.07612 1.82603 2.07829 2.83218 3.08915 3.13804 3.21581 3.48436 3.87563 3.90476 4.00294 4.17043 4.60802 4.65202 4.74721 4.81459 5.05375 5.09178 5.30438 5.47813 5.63840 5.84244 5.98131 6.11651 6.12732 6.28628 6.45913 6.64346 6.95880 7.29037 7.82326 8.65055 8.91199 9.73357 10.59182 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.005502 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.196537 B = 5087.631498 C = 6821.366001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.364 4.364 8 H 0.101 0.899 9 O -0.202 6.202 10 C 0.401 3.599 11 O -0.548 6.548 12 C -0.127 4.127 13 C -0.082 4.082 14 C -0.023 4.023 15 C 0.014 3.986 16 C -0.186 4.186 17 C 0.511 3.489 18 F -0.170 7.170 19 F -0.183 7.183 20 F -0.178 7.178 21 C -0.064 4.064 22 C -0.122 4.122 23 C 0.000 4.000 24 Cl -0.064 7.064 25 H 0.273 0.727 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.433 -13.039 -2.807 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.440 4.440 8 H 0.118 0.882 9 O -0.108 6.108 10 C 0.252 3.748 11 O -0.449 6.449 12 C -0.146 4.146 13 C -0.101 4.101 14 C -0.024 4.024 15 C -0.004 4.004 16 C -0.188 4.188 17 C 0.457 3.543 18 F -0.151 7.151 19 F -0.164 7.164 20 F -0.159 7.159 21 C -0.083 4.083 22 C -0.141 4.141 23 C -0.027 4.027 24 Cl -0.035 7.035 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.159 0.841 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.490 -12.878 -2.712 15.662 hybrid contribution 0.271 1.008 0.071 1.046 sum 8.761 -11.871 -2.641 14.988 Atomic orbital electron populations 1.69977 1.06211 1.28109 1.44387 1.25452 0.95833 0.99209 0.96064 0.85602 0.79699 0.79710 0.78311 1.18653 1.19929 1.19978 1.21427 0.92716 0.79884 1.49932 0.88162 1.83967 1.39628 1.13741 1.73488 1.19752 0.86606 0.86282 0.82176 1.90740 1.14775 1.87611 1.51785 1.21618 1.00823 0.90810 1.01345 1.22016 0.91282 0.98227 0.98608 1.18578 0.93311 0.95935 0.94608 1.20872 0.94299 0.91450 0.93814 1.19775 0.95909 1.04033 0.99049 1.18234 0.74530 0.78878 0.82682 1.93267 1.93575 1.38698 1.89562 1.93154 1.51635 1.85392 1.86217 1.93188 1.59199 1.96524 1.66986 1.20750 0.99063 0.94678 0.93777 1.20729 0.94014 1.01255 0.98100 1.21136 0.94004 0.96658 0.90897 1.98357 1.92339 1.69206 1.43580 0.91748 0.84459 0.84118 0.84497 0.84449 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.25 13.67 55.49 0.76 -23.50 16 2 C 0.04 1.10 5.50 -17.51 -0.10 1.01 16 3 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.36 -10.45 9.65 30.96 0.30 -10.15 16 8 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 9 O -0.20 -5.62 9.73 -21.95 -0.21 -5.83 16 10 C 0.40 9.49 6.95 32.10 0.22 9.71 16 11 O -0.55 -13.63 11.57 -19.40 -0.22 -13.85 16 12 C -0.13 -2.29 9.89 -39.34 -0.39 -2.68 16 13 C -0.08 -1.25 8.85 -37.13 -0.33 -1.58 16 14 C -0.02 -0.38 4.25 -105.03 -0.45 -0.83 16 15 C 0.01 0.24 6.17 -39.11 -0.24 0.00 16 16 C -0.19 -2.94 5.45 -104.69 -0.57 -3.51 16 17 C 0.51 7.99 3.36 36.00 0.12 8.11 16 18 F -0.17 -3.02 17.30 2.25 0.04 -2.98 16 19 F -0.18 -2.51 16.45 2.25 0.04 -2.47 16 20 F -0.18 -2.84 16.45 2.25 0.04 -2.80 16 21 C -0.06 -0.86 9.39 -39.46 -0.37 -1.23 16 22 C -0.12 -1.57 9.82 -39.61 -0.39 -1.96 16 23 C 0.00 0.00 6.36 -38.99 -0.25 -0.25 16 24 Cl -0.06 -0.82 28.04 -51.86 -1.45 -2.27 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 27 H 0.14 1.64 8.05 -52.49 -0.42 1.22 16 28 H 0.14 2.49 7.10 -52.49 -0.37 2.12 16 29 H 0.14 1.47 7.59 -52.49 -0.40 1.07 16 30 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -31.11 303.74 -5.44 -36.54 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -1.53 Total: 0.04 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.44 Total: -3.34 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.76 Total: -23.50 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.44 Total: -19.68 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.11 Total: -8.25 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.45 Total: -2.27 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.11 -5.44 -36.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825212166.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.043 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds