Wall clock time and date at job start Tue Mar 31 2020 13:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36068 * 122.57347 * 2 1 4 4 C 1.31614 * 114.69374 * 180.26816 * 3 2 1 5 5 S 1.75881 * 109.47793 * 359.74642 * 4 3 2 6 6 C 1.34377 * 122.57574 * 179.78852 * 2 1 3 7 7 N 1.33153 * 125.06415 * 0.02562 * 6 2 1 8 8 C 1.33595 * 119.99882 * 179.72326 * 7 6 2 9 9 O 1.21971 * 120.00269 * 359.97438 * 8 7 6 10 10 C 1.47788 * 120.00041 * 179.97438 * 8 7 6 11 11 C 1.39529 * 120.20163 * 359.97438 * 10 8 7 12 12 C 1.37871 * 119.95480 * 180.29789 * 11 10 8 13 13 C 1.38615 * 120.35679 * 359.44661 * 12 11 10 14 14 C 1.37939 * 120.41176 * 0.55662 * 13 12 11 15 15 C 1.39094 * 120.03361 * 359.72310 * 14 13 12 16 16 S 1.76202 * 120.17825 * 180.02562 * 15 14 13 17 17 C 1.76203 * 99.99673 * 6.85813 * 16 15 14 18 18 H 1.07993 * 120.00389 * 5.65756 * 17 16 15 19 19 C 1.38787 * 119.99565 * 185.65329 * 17 16 15 20 20 N 1.31565 * 120.00553 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99739 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46864 * 60.00668 * 21 19 17 23 23 H 1.48497 * 109.47118 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47256 * 300.00367 * 21 19 17 25 25 H 1.08998 * 109.46903 * 270.21563 * 1 2 3 26 26 H 1.08998 * 109.47449 * 30.20890 * 1 2 3 27 27 H 1.08997 * 109.46779 * 150.21451 * 1 2 3 28 28 H 1.08004 * 122.65005 * 0.02562 * 3 2 1 29 29 H 1.08000 * 125.25625 * 179.75234 * 4 3 2 30 30 H 1.08007 * 120.02529 * 0.02627 * 11 10 8 31 31 H 1.07995 * 119.82082 * 179.69904 * 12 11 10 32 32 H 1.08007 * 119.79657 * 180.30315 * 13 12 11 33 33 H 1.07994 * 119.97882 * 179.73895 * 14 13 12 34 34 H 0.96999 * 120.00125 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.1467 0.0000 4 6 3.5013 0.9662 -0.0056 5 16 3.8549 -0.7567 -0.0040 6 6 2.1885 -1.1324 0.0042 7 7 1.6820 -2.3638 0.0082 8 6 2.4979 -3.4217 0.0066 9 8 3.7067 -3.2595 0.0009 10 6 1.9357 -4.7884 0.0117 11 6 0.5534 -4.9788 0.0187 12 6 0.0345 -6.2561 0.0296 13 6 0.8789 -7.3554 0.0221 14 6 2.2476 -7.1845 0.0152 15 6 2.7892 -5.9033 0.0099 16 16 4.5371 -5.6806 0.0004 17 6 5.0572 -7.3514 -0.2063 18 1 4.3257 -8.1277 -0.3753 19 6 6.4070 -7.6696 -0.1519 20 7 7.2981 -6.7240 0.0544 21 14 6.9584 -9.4411 -0.3704 22 1 6.5273 -9.9328 -1.7036 23 1 8.4381 -9.5149 -0.2698 24 1 6.3481 -10.2837 0.6892 25 1 -0.3633 0.0039 1.0277 26 1 -0.3634 0.8881 -0.5171 27 1 -0.3633 -0.8919 -0.5105 28 1 1.7450 2.1273 0.0004 29 1 4.2397 1.7543 -0.0103 30 1 -0.1095 -4.1262 0.0201 31 1 -1.0356 -6.4009 0.0400 32 1 0.4625 -8.3519 0.0259 33 1 2.8990 -8.0459 0.0137 34 1 8.2415 -6.9466 0.0927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864048874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:31 Heat of formation + Delta-G solvation = 62.168219 kcal Electronic energy + Delta-G solvation = -21097.523795 eV Core-core repulsion = 17828.568960 eV Total energy + Delta-G solvation = -3268.954835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.039 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.55535 -39.15608 -37.41572 -33.59840 -32.69197 -31.82734 -30.55332 -30.13352 -27.64570 -25.75553 -24.79466 -23.01683 -21.75741 -20.43756 -20.10987 -18.19471 -17.46448 -16.65197 -16.40782 -16.06114 -15.72159 -15.25276 -14.88126 -14.12091 -14.07370 -13.99716 -13.78048 -13.50459 -13.01574 -12.82401 -12.68192 -12.57793 -11.86725 -11.53655 -11.19520 -11.13818 -10.92557 -10.84305 -10.58249 -10.25373 -9.87015 -9.68637 -9.45918 -9.40164 -9.12074 -8.61817 -8.22062 -7.95576 -7.59111 -6.43721 -6.40319 -4.09441 0.88868 1.31039 1.68229 1.97619 2.03764 2.21601 2.48653 3.15502 3.18041 3.21666 3.50073 3.88906 4.11134 4.30782 4.69375 4.71598 4.82868 5.00764 5.06516 5.23966 5.32867 5.36444 5.45110 5.65916 5.73995 5.86151 6.15462 6.34474 6.44897 6.55185 6.66280 6.83486 7.10007 7.24450 7.29577 7.50815 7.52970 7.74887 8.22209 8.85341 9.05640 10.62836 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.004190 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.755328 B = 6680.416154 C = 8360.464594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.482 5.482 3 C 0.064 3.936 4 C -0.321 4.321 5 S 0.233 5.767 6 C 0.339 3.661 7 N -0.613 5.613 8 C 0.516 3.484 9 O -0.503 6.503 10 C -0.149 4.149 11 C -0.036 4.036 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.159 4.159 15 C -0.061 4.061 16 S 0.178 5.822 17 C -0.593 4.593 18 H 0.090 0.910 19 C 0.083 3.917 20 N -0.859 5.859 21 Si 0.918 3.082 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.270 1.270 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.181 0.819 29 H 0.178 0.822 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.679 15.317 0.004 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.178 5.178 3 C -0.066 4.066 4 C -0.461 4.461 5 S 0.480 5.520 6 C -0.032 4.032 7 N -0.371 5.371 8 C 0.304 3.696 9 O -0.386 6.386 10 C -0.163 4.163 11 C -0.056 4.056 12 C -0.219 4.219 13 C -0.099 4.099 14 C -0.184 4.184 15 C -0.180 4.180 16 S 0.442 5.558 17 C -0.739 4.739 18 H 0.108 0.892 19 C -0.127 4.127 20 N -0.492 5.492 21 Si 0.743 3.257 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.195 1.195 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.198 0.802 29 H 0.196 0.804 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.425 15.314 0.118 18.526 hybrid contribution -1.245 -1.281 -0.195 1.797 sum -11.670 14.032 -0.077 18.251 Atomic orbital electron populations 1.22063 0.75703 1.04831 1.03682 1.43633 1.08617 1.02633 1.62957 1.20671 0.91685 0.90795 1.03498 1.25962 0.98794 1.06319 1.15048 1.86490 1.00206 0.92817 1.72471 1.24237 0.95000 0.91261 0.92700 1.68827 1.36879 0.94410 1.37027 1.19327 0.85113 0.88391 0.76759 1.90644 1.17241 1.84744 1.45979 1.18674 0.93243 0.89865 1.14525 1.21041 0.93622 0.96680 0.94289 1.20719 0.98603 0.92690 1.09884 1.21079 0.93545 0.97966 0.97264 1.21367 0.95103 0.96898 1.05015 1.23097 1.03183 0.94569 0.97198 1.84650 0.87712 1.07755 1.75655 1.24009 0.95714 0.97229 1.56996 0.89214 1.25082 0.95468 0.98955 0.93226 1.69974 1.02316 1.33013 1.43870 0.86217 0.77652 0.82480 0.79308 1.19503 1.20591 1.19523 0.90840 0.90017 0.88417 0.80222 0.80440 0.85932 0.87223 0.87185 0.84516 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.70 59.85 0.64 1.25 16 2 N -0.48 -5.25 3.02 -127.19 -0.38 -5.64 16 3 C 0.06 0.53 10.68 -17.53 -0.19 0.34 16 4 C -0.32 -3.12 11.17 28.87 0.32 -2.80 16 5 S 0.23 3.54 19.92 -107.50 -2.14 1.40 16 6 C 0.34 5.27 7.65 -88.71 -0.68 4.59 16 7 N -0.61 -11.23 9.03 -14.54 -0.13 -11.36 16 8 C 0.52 11.31 7.66 -12.88 -0.10 11.21 16 9 O -0.50 -12.03 11.04 4.94 0.05 -11.98 16 10 C -0.15 -3.31 5.90 -104.69 -0.62 -3.93 16 11 C -0.04 -0.68 9.58 -39.23 -0.38 -1.06 16 12 C -0.19 -3.37 10.03 -39.58 -0.40 -3.77 16 13 C -0.08 -1.42 10.03 -39.55 -0.40 -1.81 16 14 C -0.16 -3.53 9.22 -39.37 -0.36 -3.89 16 15 C -0.06 -1.48 6.14 -38.45 -0.24 -1.72 16 16 S 0.18 4.93 18.55 -107.50 -1.99 2.94 16 17 C -0.59 -16.77 9.00 30.94 0.28 -16.49 16 18 H 0.09 2.42 4.98 -52.49 -0.26 2.15 16 19 C 0.08 2.33 5.49 -17.46 -0.10 2.23 16 20 N -0.86 -25.07 13.22 55.49 0.73 -24.34 16 21 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 27 H 0.10 0.86 7.75 -51.93 -0.40 0.46 16 28 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 29 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 2.02 7.55 -52.48 -0.40 1.62 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.14 3.12 5.03 -52.49 -0.26 2.86 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -34.30 320.98 -9.25 -43.55 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -2.99 Total: 0.39 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.21 Total: -15.84 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.22 Total: -41.33 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.05 Total: -11.98 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 8.47 SS G_CDS: -4.14 Total: 4.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.30 -9.25 -43.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864048874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.721 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds