Wall clock time and date at job start Tue Mar 31 2020 13:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36068 * 122.57347 * 2 1 4 4 C 1.31614 * 114.69374 * 180.26816 * 3 2 1 5 5 S 1.75881 * 109.47793 * 359.74642 * 4 3 2 6 6 C 1.34377 * 122.57574 * 179.78852 * 2 1 3 7 7 N 1.33153 * 125.06415 * 0.02562 * 6 2 1 8 8 C 1.33595 * 119.99882 * 179.72326 * 7 6 2 9 9 O 1.21971 * 120.00269 * 359.97438 * 8 7 6 10 10 C 1.47788 * 120.00041 * 179.97438 * 8 7 6 11 11 C 1.39529 * 120.20163 * 359.97438 * 10 8 7 12 12 C 1.37871 * 119.95480 * 180.29789 * 11 10 8 13 13 C 1.38615 * 120.35679 * 359.44661 * 12 11 10 14 14 C 1.37939 * 120.41176 * 0.55662 * 13 12 11 15 15 C 1.39094 * 120.03361 * 359.72310 * 14 13 12 16 16 S 1.76202 * 120.17825 * 180.02562 * 15 14 13 17 17 C 1.76203 * 99.99673 * 6.85813 * 16 15 14 18 18 H 1.07993 * 120.00389 * 5.65756 * 17 16 15 19 19 C 1.38787 * 119.99565 * 185.65329 * 17 16 15 20 20 N 1.31565 * 120.00553 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99739 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46864 * 60.00668 * 21 19 17 23 23 H 1.48497 * 109.47118 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47256 * 300.00367 * 21 19 17 25 25 H 1.08998 * 109.46903 * 270.21563 * 1 2 3 26 26 H 1.08998 * 109.47449 * 30.20890 * 1 2 3 27 27 H 1.08997 * 109.46779 * 150.21451 * 1 2 3 28 28 H 1.08004 * 122.65005 * 0.02562 * 3 2 1 29 29 H 1.08000 * 125.25625 * 179.75234 * 4 3 2 30 30 H 1.08007 * 120.02529 * 0.02627 * 11 10 8 31 31 H 1.07995 * 119.82082 * 179.69904 * 12 11 10 32 32 H 1.08007 * 119.79657 * 180.30315 * 13 12 11 33 33 H 1.07994 * 119.97882 * 179.73895 * 14 13 12 34 34 H 0.96999 * 120.00125 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.1467 0.0000 4 6 3.5013 0.9662 -0.0056 5 16 3.8549 -0.7567 -0.0040 6 6 2.1885 -1.1324 0.0042 7 7 1.6820 -2.3638 0.0082 8 6 2.4979 -3.4217 0.0066 9 8 3.7067 -3.2595 0.0009 10 6 1.9357 -4.7884 0.0117 11 6 0.5534 -4.9788 0.0187 12 6 0.0345 -6.2561 0.0296 13 6 0.8789 -7.3554 0.0221 14 6 2.2476 -7.1845 0.0152 15 6 2.7892 -5.9033 0.0099 16 16 4.5371 -5.6806 0.0004 17 6 5.0572 -7.3514 -0.2063 18 1 4.3257 -8.1277 -0.3753 19 6 6.4070 -7.6696 -0.1519 20 7 7.2981 -6.7240 0.0544 21 14 6.9584 -9.4411 -0.3704 22 1 6.5273 -9.9328 -1.7036 23 1 8.4381 -9.5149 -0.2698 24 1 6.3481 -10.2837 0.6892 25 1 -0.3633 0.0039 1.0277 26 1 -0.3634 0.8881 -0.5171 27 1 -0.3633 -0.8919 -0.5105 28 1 1.7450 2.1273 0.0004 29 1 4.2397 1.7543 -0.0103 30 1 -0.1095 -4.1262 0.0201 31 1 -1.0356 -6.4009 0.0400 32 1 0.4625 -8.3519 0.0259 33 1 2.8990 -8.0459 0.0137 34 1 8.2415 -6.9466 0.0927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864048874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:30 Heat of formation + Delta-G solvation = 39.266632 kcal Electronic energy + Delta-G solvation = -21098.516882 eV Core-core repulsion = 17828.568960 eV Total energy + Delta-G solvation = -3269.947922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.039 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.58793 -40.61571 -38.98857 -34.90376 -34.72372 -32.73121 -32.06734 -31.75622 -28.61860 -27.82136 -25.88213 -24.36235 -23.34852 -21.82071 -21.15610 -19.84122 -18.96032 -17.94876 -17.78226 -17.17766 -17.06454 -16.90502 -16.52950 -15.52877 -15.50163 -15.38238 -14.96737 -14.76328 -14.59757 -14.37666 -13.66545 -13.34827 -13.25998 -13.21653 -12.95941 -12.89130 -12.52845 -12.13547 -12.02655 -11.72201 -11.45166 -11.35861 -11.26785 -10.68518 -10.48002 -10.37486 -9.81106 -9.75270 -8.81144 -8.43274 -8.39354 -6.21854 -0.45984 0.14081 0.38882 0.59180 1.04440 1.05575 1.27185 1.38646 1.44119 1.51945 1.66119 2.22906 2.38337 2.90560 3.12484 3.15106 3.27783 3.98807 4.12992 4.17327 4.28406 4.45503 4.53018 4.60479 4.67908 4.72988 4.86076 4.89217 4.94134 5.21462 5.42926 5.49334 5.56957 5.57972 5.69203 5.80078 6.12661 6.14605 6.21086 6.97061 7.38084 8.62060 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.004190 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.755328 B = 6680.416154 C = 8360.464594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.466 5.466 3 C 0.081 3.919 4 C -0.310 4.310 5 S 0.152 5.848 6 C 0.331 3.669 7 N -0.626 5.626 8 C 0.503 3.497 9 O -0.541 6.541 10 C -0.160 4.160 11 C -0.037 4.037 12 C -0.165 4.165 13 C -0.069 4.069 14 C -0.178 4.178 15 C -0.077 4.077 16 S 0.066 5.934 17 C -0.603 4.603 18 H 0.093 0.907 19 C 0.025 3.975 20 N -0.904 5.904 21 Si 0.994 3.006 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.261 1.261 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.082 0.918 28 H 0.244 0.756 29 H 0.211 0.789 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.063 17.126 -0.129 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.161 5.161 3 C -0.048 4.048 4 C -0.449 4.449 5 S 0.400 5.600 6 C -0.039 4.039 7 N -0.387 5.387 8 C 0.290 3.710 9 O -0.426 6.426 10 C -0.172 4.172 11 C -0.057 4.057 12 C -0.188 4.188 13 C -0.090 4.090 14 C -0.203 4.203 15 C -0.195 4.195 16 S 0.325 5.675 17 C -0.750 4.750 18 H 0.111 0.889 19 C -0.180 4.180 20 N -0.539 5.539 21 Si 0.814 3.186 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.185 1.185 25 H 0.106 0.894 26 H 0.146 0.854 27 H 0.101 0.899 28 H 0.260 0.740 29 H 0.228 0.772 30 H 0.168 0.832 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.139 0.861 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.928 17.220 -0.014 22.790 hybrid contribution -0.299 -1.394 -0.144 1.433 sum -15.227 15.826 -0.158 21.963 Atomic orbital electron populations 1.22440 0.73073 1.06426 1.05125 1.44168 1.10290 1.01774 1.59881 1.21649 0.91026 0.91787 1.00334 1.26164 1.00379 1.02483 1.15885 1.86843 1.01998 0.98835 1.72336 1.24368 0.95120 0.91922 0.92503 1.68731 1.35672 0.94579 1.39707 1.19602 0.85133 0.89493 0.76744 1.90663 1.18624 1.85543 1.47759 1.19155 0.94784 0.89894 1.13387 1.21413 0.92123 0.98688 0.93430 1.21349 1.01058 0.91216 1.05160 1.21529 0.91679 1.00666 0.95081 1.21426 0.97033 0.95527 1.06342 1.23021 1.00734 0.96413 0.99357 1.84815 0.92454 1.09204 1.81035 1.24213 0.96357 0.97015 1.57393 0.88923 1.26142 0.95295 1.03770 0.92831 1.70131 1.02529 1.35378 1.45890 0.85084 0.77435 0.76465 0.79578 1.18670 1.19694 1.18496 0.89435 0.85409 0.89904 0.74005 0.77163 0.83196 0.81937 0.83029 0.86086 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.70 127.77 1.37 2.12 16 2 N -0.47 -8.66 3.02 -556.32 -1.68 -10.34 16 3 C 0.08 0.94 10.68 83.42 0.89 1.83 16 4 C -0.31 -5.17 11.17 67.20 0.75 -4.41 16 5 S 0.15 4.82 19.92 -56.49 -1.13 3.69 16 6 C 0.33 10.20 7.65 179.68 1.38 11.58 16 7 N -0.63 -23.26 9.03 -318.66 -2.88 -26.13 16 8 C 0.50 23.37 7.66 86.95 0.67 24.04 16 9 O -0.54 -28.40 11.04 -5.22 -0.06 -28.46 16 10 C -0.16 -7.33 5.90 -19.91 -0.12 -7.44 16 11 C -0.04 -1.30 9.58 22.49 0.22 -1.08 16 12 C -0.17 -5.01 10.03 22.27 0.22 -4.79 16 13 C -0.07 -2.36 10.03 22.29 0.22 -2.13 16 14 C -0.18 -8.11 9.22 22.40 0.21 -7.90 16 15 C -0.08 -3.99 6.14 23.00 0.14 -3.85 16 16 S 0.07 4.04 18.55 -56.49 -1.05 2.99 16 17 C -0.60 -36.67 9.00 67.95 0.61 -36.06 16 18 H 0.09 5.33 4.98 -2.91 -0.01 5.31 16 19 C 0.03 1.49 5.49 84.86 0.47 1.96 16 20 N -0.90 -56.67 13.22 21.64 0.29 -56.39 16 21 Si 0.99 45.19 29.55 68.60 2.03 47.21 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.13 0.24 8.10 -2.39 -0.02 0.22 16 27 H 0.08 1.21 7.75 -2.39 -0.02 1.19 16 28 H 0.24 -0.07 8.06 -2.91 -0.02 -0.09 16 29 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 30 H 0.15 4.48 7.55 -2.91 -0.02 4.46 16 31 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 32 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 33 H 0.12 5.81 5.03 -2.91 -0.01 5.80 16 34 H 0.28 15.94 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -87.54 320.98 3.69 -83.85 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.15 Total: 9.72 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 7.02 Total: -26.14 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -4.27 Total: -92.86 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.06 Total: -28.46 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 8.86 SS G_CDS: -2.17 Total: 6.68 kcal Total: -87.54 3.69 -83.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864048874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.114 kcal (2) G-P(sol) polarization free energy of solvation -87.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds