Wall clock time and date at job start Tue Mar 31 2020 12:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39748 * 120.20406 * 359.77765 * 3 2 1 5 5 C 1.37787 * 119.93707 * 180.25412 * 4 3 2 6 6 C 1.38574 * 120.35098 * 359.74778 * 5 4 3 7 7 C 1.38083 * 120.41051 * 359.97438 * 6 5 4 8 8 Br 1.89101 * 119.97319 * 180.02562 * 7 6 5 9 9 C 1.38967 * 120.05670 * 0.02562 * 7 6 5 10 10 N 1.39077 * 120.17471 * 179.97438 * 9 7 6 11 11 C 1.46905 * 110.99680 * 95.96826 * 10 9 7 12 12 C 1.53005 * 109.46783 * 185.11857 * 11 10 9 13 13 C 1.50699 * 115.54775 * 39.68132 * 12 11 10 14 14 H 1.08006 * 119.99837 * 266.87791 * 13 12 11 15 15 C 1.37877 * 120.00380 * 86.88375 * 13 12 11 16 16 N 1.31518 * 120.00071 * 182.40742 * 15 13 12 17 17 Si 1.86797 * 119.99866 * 2.39926 * 15 13 12 18 18 H 1.48500 * 109.46866 * 87.54057 * 17 15 13 19 19 H 1.48499 * 109.47304 * 207.54146 * 17 15 13 20 20 H 1.48499 * 109.47269 * 327.54651 * 17 15 13 21 21 C 1.52999 * 117.49715 * 185.34661 * 12 11 10 22 22 C 1.53001 * 60.02936 * 107.48009 * 21 12 11 23 23 H 1.08006 * 120.03779 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.82676 * 179.76387 * 5 4 3 25 25 H 1.07997 * 119.79547 * 179.97438 * 6 5 4 26 26 H 1.00905 * 110.99883 * 219.92032 * 10 9 7 27 27 H 1.08994 * 109.47186 * 65.12424 * 11 10 9 28 28 H 1.08999 * 109.47237 * 305.11873 * 11 10 9 29 29 H 0.97000 * 119.99465 * 179.97438 * 16 15 13 30 30 H 1.09004 * 117.49614 * 214.98325 * 21 12 11 31 31 H 1.08999 * 117.49674 * 359.97438 * 21 12 11 32 32 H 1.09004 * 117.49835 * 107.49969 * 22 21 12 33 33 H 1.08995 * 117.50048 * 252.51788 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2716 -1.2068 0.0047 5 6 4.6494 -1.1997 0.0100 6 6 5.3435 -0.0004 0.0054 7 6 4.6629 1.2010 -0.0050 8 35 5.6226 2.8304 -0.0119 9 6 3.2733 1.2138 -0.0105 10 7 2.5853 2.4224 -0.0204 11 6 2.2063 2.8011 -1.3883 12 6 1.5670 4.1911 -1.3740 13 6 2.2084 5.1919 -0.4478 14 1 1.8327 5.3157 0.5572 15 6 3.2748 5.9497 -0.8832 16 7 3.8647 6.7890 -0.0603 17 14 3.8818 5.7841 -2.6421 18 1 3.1192 6.7094 -3.5180 19 1 5.3261 6.1239 -2.7013 20 1 3.6824 4.3873 -3.1051 21 6 0.9878 4.7158 -2.6893 22 6 0.0504 4.2734 -1.5640 23 1 2.7359 -2.1447 0.0087 24 1 5.1913 -2.1339 0.0174 25 1 6.4235 -0.0053 0.0100 26 1 1.7763 2.3829 0.5812 27 1 1.4926 2.0770 -1.7812 28 1 3.0941 2.8160 -2.0205 29 1 4.6151 7.3218 -0.3666 30 1 1.0704 5.7851 -2.8845 31 1 1.0626 4.0710 -3.5649 32 1 -0.4839 5.0515 -1.0188 33 1 -0.4914 3.3373 -1.6991 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865751543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:15 Heat of formation + Delta-G solvation = 79.995675 kcal Electronic energy + Delta-G solvation = -18755.783698 eV Core-core repulsion = 15828.377656 eV Total energy + Delta-G solvation = -2927.406042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 320.022 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01851 -38.90080 -37.57947 -36.05422 -34.03143 -33.28737 -31.18447 -29.86182 -27.78455 -26.40752 -24.83946 -23.36668 -22.52134 -20.86755 -19.78665 -18.28730 -17.81219 -17.14853 -16.73037 -16.07194 -15.68976 -15.22575 -15.02107 -14.93802 -14.68045 -14.41593 -14.24876 -14.03226 -13.81304 -13.57368 -13.03279 -12.74370 -12.50776 -12.35290 -12.17600 -12.00076 -11.63928 -11.49732 -10.94635 -10.82502 -10.48251 -10.30075 -10.04311 -9.75019 -9.20341 -8.09582 -6.09228 -0.34523 0.11486 0.90717 1.36407 1.41274 1.49009 1.53710 1.81727 2.48116 2.67771 2.76604 2.93613 3.23579 3.30882 3.92855 3.98560 4.14353 4.24516 4.30497 4.34483 4.43319 4.47382 4.54725 4.79737 4.81710 5.02466 5.07163 5.16423 5.27098 5.28030 5.42752 5.67045 5.80220 6.09256 6.33708 6.41301 6.49751 6.91308 7.56647 9.06490 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.008396 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.975520 B = 3334.097556 C = 4895.128432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.268 3.732 3 C -0.086 4.086 4 C -0.033 4.033 5 C -0.110 4.110 6 C -0.048 4.048 7 C -0.108 4.108 8 Br -0.045 7.045 9 C 0.162 3.838 10 N -0.629 5.629 11 C 0.123 3.877 12 C -0.018 4.018 13 C -0.440 4.440 14 H 0.033 0.967 15 C 0.053 3.947 16 N -0.942 5.942 17 Si 0.908 3.092 18 H -0.282 1.282 19 H -0.305 1.305 20 H -0.237 1.237 21 C -0.197 4.197 22 C -0.170 4.170 23 H 0.168 0.832 24 H 0.186 0.814 25 H 0.162 0.838 26 H 0.350 0.650 27 H 0.026 0.974 28 H 0.062 0.938 29 H 0.256 0.744 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -19.456 -2.032 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.046 4.046 3 C -0.093 4.093 4 C -0.054 4.054 5 C -0.129 4.129 6 C -0.069 4.069 7 C -0.189 4.189 8 Br 0.040 6.960 9 C 0.060 3.940 10 N -0.256 5.256 11 C -0.004 4.004 12 C -0.019 4.019 13 C -0.478 4.478 14 H 0.052 0.948 15 C -0.144 4.144 16 N -0.583 5.583 17 Si 0.736 3.264 18 H -0.209 1.209 19 H -0.233 1.233 20 H -0.160 1.160 21 C -0.235 4.235 22 C -0.207 4.207 23 H 0.185 0.815 24 H 0.204 0.796 25 H 0.180 0.820 26 H 0.171 0.829 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.152 -18.272 -2.031 19.092 hybrid contribution -0.238 0.083 -0.650 0.697 sum 4.914 -18.188 -2.681 19.030 Atomic orbital electron populations 1.81262 1.12848 1.07770 1.10376 1.25758 0.92756 0.93272 0.92856 1.16851 0.83893 0.95687 1.12862 1.21578 0.95006 0.96025 0.92801 1.21498 0.92957 0.98879 0.99574 1.21709 1.02002 0.89783 0.93383 1.22030 0.92757 0.93716 1.10385 1.96885 1.71915 1.29747 1.97405 1.18784 0.92533 0.87938 0.94760 1.57276 1.30228 1.26736 1.11321 1.21490 0.97786 0.94336 0.86763 1.19439 0.92520 0.94013 0.95961 1.19924 1.13591 1.16954 0.97324 0.94831 1.25204 0.95708 0.94417 0.99104 1.70015 1.23861 1.27612 1.36834 0.86386 0.76204 0.80411 0.83365 1.20865 1.23267 1.16033 1.22988 1.07011 1.00494 0.92990 1.22886 0.93572 1.01738 1.02506 0.81475 0.79635 0.82010 0.82880 0.95631 0.91924 0.93454 0.90655 0.88630 0.90263 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.16 18.54 19.00 0.35 -13.81 16 2 C 0.27 7.41 13.53 88.33 1.20 8.61 16 3 C -0.09 -2.03 5.75 -21.16 -0.12 -2.15 16 4 C -0.03 -0.48 9.75 22.53 0.22 -0.26 16 5 C -0.11 -1.26 10.02 22.24 0.22 -1.03 16 6 C -0.05 -0.84 9.76 22.31 0.22 -0.63 16 7 C -0.11 -2.99 6.24 22.41 0.14 -2.85 16 8 Br -0.05 -1.63 33.08 -20.37 -0.67 -2.30 16 9 C 0.16 4.87 5.26 38.68 0.20 5.07 16 10 N -0.63 -23.58 4.77 -337.77 -1.61 -25.19 16 11 C 0.12 4.79 5.41 86.30 0.47 5.26 16 12 C -0.02 -0.81 1.21 -52.90 -0.06 -0.87 16 13 C -0.44 -24.02 8.76 25.60 0.22 -23.79 16 14 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 15 C 0.05 3.00 5.47 84.65 0.46 3.46 16 16 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 17 Si 0.91 44.68 24.93 68.60 1.71 46.39 16 18 H -0.28 -13.66 7.09 99.48 0.71 -12.95 16 19 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 20 H -0.24 -10.65 5.55 99.48 0.55 -10.10 16 21 C -0.20 -8.08 7.53 30.59 0.23 -7.85 16 22 C -0.17 -6.77 9.89 30.62 0.30 -6.47 16 23 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 24 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 25 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 26 H 0.35 13.27 7.88 -89.69 -0.71 12.56 16 27 H 0.03 0.92 7.38 -2.39 -0.02 0.90 16 28 H 0.06 2.57 6.54 -2.39 -0.02 2.55 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.07 3.31 7.04 -2.38 -0.02 3.29 16 31 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 32 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 33 H 0.09 3.19 8.08 -2.39 -0.02 3.17 16 Total: -1.00 -68.26 307.34 4.06 -64.20 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.28 Total: 11.80 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 3.70 Total: -23.51 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -0.96 Total: -96.58 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.71 Total: 46.39 kcal Atomic # 35 Polarization: -1.63 SS G_CDS: -0.67 Total: -2.30 kcal Total: -68.26 4.06 -64.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865751543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.196 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds