Wall clock time and date at job start Tue Mar 31 2020 12:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48504 * 109.47395 * 270.00462 * 3 2 1 5 5 H 1.48504 * 109.47218 * 30.00200 * 3 2 1 6 6 H 1.48500 * 109.47369 * 149.99989 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 O 1.52198 * 104.44745 * 180.02562 * 11 10 9 15 15 C 1.35717 * 114.00268 * 75.00272 * 14 11 10 16 16 C 1.39113 * 119.87056 * 89.99447 * 15 14 11 17 17 C 1.36533 * 120.34472 * 179.97438 * 16 15 14 18 18 C 1.40106 * 120.06525 * 0.02562 * 17 16 15 19 19 C 1.46681 * 120.12947 * 180.02562 * 18 17 16 20 20 O 1.21311 * 120.00283 * 0.02562 * 19 18 17 21 21 C 1.40304 * 119.73393 * 0.02562 * 18 17 16 22 22 F 1.35097 * 120.16785 * 179.97438 * 21 18 17 23 23 C 1.38183 * 119.66605 * 359.71865 * 21 18 17 24 24 F 1.35089 * 120.04078 * 180.30207 * 23 21 18 25 25 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 27 27 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 28 28 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 29 29 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 30 30 H 1.07999 * 119.82624 * 359.97438 * 16 15 14 31 31 H 1.07995 * 119.96676 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.99747 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 8 2.4250 -6.2988 -0.0006 15 6 3.0429 -6.4564 1.1974 16 6 2.5421 -7.3687 2.1206 17 6 3.1563 -7.5354 3.3285 18 6 4.2970 -6.7861 3.6453 19 6 4.9584 -6.9645 4.9423 20 8 4.5181 -7.7624 5.7430 21 6 4.8040 -5.8644 2.7169 22 9 5.9031 -5.1368 3.0134 23 6 4.1767 -5.7083 1.4956 24 9 4.6621 -4.8275 0.5937 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6042 -0.8904 30 1 1.6628 -7.9480 1.8805 31 1 2.7626 -8.2456 4.0404 32 1 5.8372 -6.3854 5.1844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885506179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:56 Heat of formation + Delta-G solvation = -218.634494 kcal Electronic energy + Delta-G solvation = -24945.591612 eV Core-core repulsion = 20635.185106 eV Total energy + Delta-G solvation = -4310.406506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.041 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.96663 -50.03333 -42.39143 -40.56314 -38.75016 -38.47052 -37.41938 -35.97925 -33.26290 -32.23323 -31.99482 -27.75877 -26.78908 -24.59846 -23.94771 -23.09435 -21.90994 -20.06994 -19.53222 -19.39513 -18.79162 -18.58930 -18.12338 -17.69401 -17.55608 -16.82620 -16.61320 -16.57906 -16.36193 -16.13047 -15.69047 -15.41667 -15.31650 -15.29592 -14.59087 -14.46495 -14.17466 -13.81909 -13.52900 -13.47701 -13.45065 -13.17075 -13.11395 -12.98052 -12.85975 -12.34008 -12.20674 -11.81195 -11.21477 -11.08702 -10.66291 -10.44246 -10.27610 -8.28288 -6.41936 -1.54632 -0.80094 -0.52716 0.74654 0.98709 1.40616 1.41778 1.53027 2.01574 2.07723 2.32717 2.40991 2.64774 2.77813 2.83094 3.05647 3.11385 3.30598 3.43784 3.82538 3.87765 3.94566 4.23127 4.32708 4.50477 4.61556 4.65601 4.76974 5.17683 5.18675 5.21460 5.65438 6.02731 6.17111 6.70175 7.28240 8.83888 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.004553 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.773163 B = 6147.881796 C = 7244.739260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.608 4.608 11 S 2.594 3.406 12 O -0.962 6.962 13 O -0.956 6.956 14 O -0.655 6.655 15 C 0.072 3.928 16 C -0.087 4.087 17 C -0.014 4.014 18 C -0.178 4.178 19 C 0.402 3.598 20 O -0.467 6.467 21 C 0.143 3.857 22 F -0.101 7.101 23 C 0.029 3.971 24 F -0.115 7.115 25 H 0.269 0.731 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.182 0.818 31 H 0.194 0.806 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.151 -15.902 8.526 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.090 0.910 9 C -0.013 4.013 10 C -0.738 4.738 11 S 2.694 3.306 12 O -0.960 6.960 13 O -0.955 6.955 14 O -0.613 6.613 15 C 0.029 3.971 16 C -0.106 4.106 17 C -0.032 4.032 18 C -0.181 4.181 19 C 0.260 3.740 20 O -0.339 6.339 21 C 0.122 3.878 22 F -0.079 7.079 23 C 0.007 3.993 24 F -0.094 7.094 25 H 0.077 0.923 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.154 0.846 29 H 0.162 0.838 30 H 0.200 0.800 31 H 0.211 0.789 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.318 -16.779 8.720 22.038 hybrid contribution 0.554 2.007 -1.016 2.317 sum 11.872 -14.771 7.703 20.457 Atomic orbital electron populations 1.70078 1.07896 1.28419 1.50598 1.26036 0.95841 1.03604 0.94237 0.85349 0.78665 0.77835 0.78645 1.19681 1.20576 1.18366 1.21446 0.93848 0.90715 1.51944 0.91006 1.18817 0.93143 0.92179 0.97116 1.30683 1.13271 1.17387 1.12459 1.05539 0.74821 0.76331 0.73907 1.93575 1.72712 1.83864 1.45875 1.93567 1.71022 1.84692 1.46172 1.85749 1.64450 1.70834 1.40242 1.18515 0.93937 1.01350 0.83325 1.21433 1.01328 0.95848 0.92037 1.21418 0.90736 0.96012 0.95063 1.21430 0.99673 0.98331 0.98692 1.24278 0.87251 0.80791 0.81700 1.90591 1.63364 1.31512 1.48476 1.17369 0.85759 0.93287 0.91399 1.91619 1.48771 1.74765 1.92732 1.17880 0.96728 0.95171 0.89525 1.91623 1.86869 1.65437 1.65429 0.92261 0.96863 0.96444 0.84552 0.83764 0.80047 0.78930 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 9 C 0.03 1.34 4.98 29.85 0.15 1.49 16 10 C -0.61 -23.78 4.57 71.98 0.33 -23.45 16 11 S 2.59 93.94 5.17 -56.49 -0.29 93.65 16 12 O -0.96 -35.88 16.25 -118.57 -1.93 -37.80 16 13 O -0.96 -40.68 18.09 -118.57 -2.15 -42.83 16 14 O -0.65 -19.30 9.89 -59.48 -0.59 -19.89 16 15 C 0.07 1.80 4.81 22.68 0.11 1.91 16 16 C -0.09 -1.59 8.96 22.08 0.20 -1.40 16 17 C -0.01 -0.20 9.54 22.32 0.21 0.01 16 18 C -0.18 -2.55 5.88 -20.12 -0.12 -2.67 16 19 C 0.40 4.49 11.24 70.03 0.79 5.28 16 20 O -0.47 -8.06 17.15 -3.13 -0.05 -8.11 16 21 C 0.14 2.61 7.30 22.76 0.17 2.78 16 22 F -0.10 -1.74 16.53 44.97 0.74 -1.00 16 23 C 0.03 0.71 6.32 22.46 0.14 0.85 16 24 F -0.12 -3.15 14.61 44.97 0.66 -2.49 16 25 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.14 4.82 6.11 -2.39 -0.01 4.80 16 29 H 0.14 5.18 8.14 -2.39 -0.02 5.16 16 30 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.19 1.67 7.64 -2.91 -0.02 1.64 16 32 H 0.16 0.66 7.73 -2.91 -0.02 0.64 16 Total: -1.00 -73.63 310.01 2.56 -71.07 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: 1.19 Total: 1.88 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 2.67 Total: -44.19 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.28 Total: -55.24 kcal Atomic # 8 Polarization: -103.91 SS G_CDS: -4.71 Total: -108.63 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 1.40 Total: -3.49 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 93.94 SS G_CDS: -0.29 Total: 93.65 kcal Total: -73.63 2.56 -71.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885506179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.569 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds