Wall clock time and date at job start Tue Mar 31 2020 13:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47399 * 2 1 4 4 C 1.50699 * 109.47185 * 120.00232 * 2 1 3 5 5 H 1.08001 * 119.99951 * 120.00396 * 4 2 1 6 6 C 1.37876 * 119.99956 * 299.99272 * 4 2 1 7 7 N 1.31509 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99911 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46904 * 60.00444 * 8 6 4 10 10 H 1.48496 * 109.47037 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47159 * 300.00648 * 8 6 4 12 12 O 1.45202 * 109.46964 * 239.99982 * 2 1 3 13 13 C 1.34754 * 116.99954 * 89.99874 * 12 2 1 14 14 O 1.21507 * 119.99631 * 0.02562 * 13 12 2 15 15 C 1.47470 * 119.99914 * 180.02562 * 13 12 2 16 16 C 1.39801 * 120.08631 * 180.02562 * 15 13 12 17 17 C 1.37678 * 119.92451 * 180.27519 * 16 15 13 18 18 C 1.38991 * 120.11030 * 359.49219 * 17 16 15 19 19 O 1.35722 * 119.91228 * 180.25630 * 18 17 16 20 20 C 1.42897 * 117.00228 * 0.24974 * 19 18 17 21 21 F 1.39903 * 109.46771 * 300.00276 * 20 19 18 22 22 F 1.39896 * 109.47067 * 59.99846 * 20 19 18 23 23 C 1.39096 * 120.17520 * 0.50364 * 18 17 16 24 24 Cl 1.73602 * 119.96073 * 179.73095 * 23 18 17 25 25 C 1.37788 * 120.07046 * 359.75172 * 23 18 17 26 26 H 1.08995 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46771 * 300.00067 * 1 2 3 28 28 H 1.08995 * 109.47192 * 59.99371 * 1 2 3 29 29 H 0.97006 * 120.00237 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.03464 * 359.97438 * 16 15 13 31 31 H 1.08005 * 119.94896 * 179.73974 * 17 16 15 32 32 H 1.08997 * 109.47135 * 180.02562 * 20 19 18 33 33 H 1.08008 * 120.04866 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1211 4.0080 10 1 1.8262 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0076 12 8 2.0140 -0.6845 -1.1856 13 6 2.2178 0.0669 -2.2854 14 8 1.9977 1.2615 -2.2544 15 6 2.7082 -0.5606 -3.5266 16 6 2.9208 0.2173 -4.6686 17 6 3.3732 -0.3729 -5.8272 18 6 3.6288 -1.7387 -5.8602 19 8 4.0796 -2.3155 -7.0031 20 6 4.2736 -1.4582 -8.1297 21 9 3.0594 -0.8514 -8.4684 22 9 5.2139 -0.4730 -7.8096 23 6 3.4188 -2.5169 -4.7266 24 17 3.7332 -4.2235 -4.7760 25 6 2.9612 -1.9347 -3.5646 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7084 1.1609 3.4844 30 1 2.7258 1.2793 -4.6433 31 1 3.5336 0.2270 -6.7109 32 1 4.6345 -2.0446 -8.9746 33 1 2.7987 -2.5392 -2.6844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892692676.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:01 Heat of formation + Delta-G solvation = -231.203858 kcal Electronic energy + Delta-G solvation = -24026.733835 eV Core-core repulsion = 19713.738574 eV Total energy + Delta-G solvation = -4312.995261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.046 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.36690 -48.35128 -41.74616 -40.88590 -38.72760 -37.73629 -37.36207 -35.34935 -32.47958 -32.08343 -31.30703 -27.56016 -27.43134 -25.38829 -24.22371 -23.24994 -21.67409 -20.31015 -19.66155 -18.98902 -18.94838 -18.37249 -17.80843 -17.33106 -16.88478 -16.70871 -16.20217 -15.98596 -15.97110 -15.13945 -15.07619 -14.95298 -14.68995 -14.49691 -14.32121 -14.03892 -13.94517 -13.67865 -13.24672 -13.14607 -12.97469 -12.81670 -12.58453 -12.54173 -12.38745 -12.18895 -12.11281 -11.62725 -11.53798 -11.01884 -10.60033 -10.26983 -9.77550 -8.28723 -6.45708 -0.64560 -0.16207 0.87833 1.33175 1.33662 1.42860 1.46780 1.54448 1.86673 2.36453 2.40802 2.47389 3.02282 3.31701 3.37901 3.63901 3.67938 3.69148 3.83599 4.04729 4.32716 4.45524 4.54557 4.72155 4.77997 4.81637 4.96133 5.06080 5.15465 5.47166 5.53429 5.60703 5.87287 6.03010 6.57509 6.85367 7.25434 8.78944 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.003092 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.898926 B = 9052.005564 C = 9864.960740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.011 0.989 4 C -0.550 4.550 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.983 3.017 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.263 1.263 12 O -0.354 6.354 13 C 0.497 3.503 14 O -0.545 6.545 15 C -0.147 4.147 16 C -0.011 4.011 17 C -0.187 4.187 18 C 0.155 3.845 19 O -0.310 6.310 20 C 0.405 3.595 21 F -0.205 7.205 22 F -0.205 7.205 23 C -0.073 4.073 24 Cl -0.035 7.035 25 C -0.017 4.017 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.024 0.976 29 H 0.271 0.729 30 H 0.154 0.846 31 H 0.169 0.831 32 H 0.244 0.756 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 -8.002 -23.436 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.028 0.972 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.806 3.194 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.188 1.188 12 O -0.270 6.270 13 C 0.344 3.656 14 O -0.438 6.438 15 C -0.149 4.149 16 C -0.029 4.029 17 C -0.205 4.205 18 C 0.110 3.890 19 O -0.226 6.226 20 C 0.317 3.683 21 F -0.186 7.186 22 F -0.187 7.187 23 C -0.101 4.101 24 Cl -0.006 7.006 25 C -0.036 4.036 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.172 0.828 31 H 0.186 0.814 32 H 0.259 0.741 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.189 -7.854 -23.293 25.611 hybrid contribution -0.068 0.398 1.041 1.116 sum 7.121 -7.456 -22.252 24.525 Atomic orbital electron populations 1.22002 0.96613 1.00554 1.00935 1.20418 0.92113 0.92216 0.78728 0.97161 1.21268 1.33580 1.14053 0.89798 0.91203 1.25821 0.94671 0.95644 1.02110 1.70007 1.36477 1.23642 1.25337 0.85232 0.78797 0.78657 0.76735 1.19317 1.20270 1.18770 1.86525 1.76164 1.43158 1.21186 1.21467 0.74180 0.85030 0.84947 1.90760 1.50456 1.17352 1.85200 1.19079 1.09400 0.94232 0.92184 1.21265 0.91004 1.01190 0.89485 1.21571 1.05658 0.92557 1.00726 1.18823 0.93274 0.91330 0.85606 1.86706 1.79413 1.37982 1.18516 1.24469 0.74158 0.80761 0.88934 1.93106 1.48102 1.85325 1.92099 1.93106 1.65800 1.66082 1.93666 1.19960 1.09646 0.87235 0.93227 1.98382 1.94225 1.09378 1.98590 1.21290 0.91754 0.93420 0.97114 0.93404 0.89893 0.95727 0.91938 0.82838 0.81354 0.74055 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.43 9.33 71.98 0.67 -6.76 16 2 C 0.22 12.07 2.56 29.85 0.08 12.15 16 3 H 0.01 0.65 7.16 -2.39 -0.02 0.64 16 4 C -0.55 -31.17 8.90 25.60 0.23 -30.94 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.98 42.75 29.54 68.60 2.03 44.78 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 12 O -0.35 -17.20 9.11 -56.64 -0.52 -17.72 16 13 C 0.50 21.70 7.86 70.26 0.55 22.25 16 14 O -0.54 -26.59 15.60 19.81 0.31 -26.28 16 15 C -0.15 -4.87 5.87 -20.10 -0.12 -4.98 16 16 C -0.01 -0.30 9.58 22.52 0.22 -0.09 16 17 C -0.19 -4.06 8.23 22.32 0.18 -3.88 16 18 C 0.16 3.38 6.49 22.66 0.15 3.53 16 19 O -0.31 -4.96 9.87 -90.45 -0.89 -5.85 16 20 C 0.41 3.63 5.98 113.37 0.68 4.31 16 21 F -0.20 -2.63 15.55 44.97 0.70 -1.93 16 22 F -0.20 -2.67 15.58 44.97 0.70 -1.97 16 23 C -0.07 -1.81 6.32 22.37 0.14 -1.67 16 24 Cl -0.03 -0.77 28.49 -2.72 -0.08 -0.85 16 25 C -0.02 -0.49 9.38 22.53 0.21 -0.28 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.08 4.59 6.07 -2.38 -0.01 4.58 16 28 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 30 H 0.15 4.03 7.64 -2.91 -0.02 4.00 16 31 H 0.17 2.96 5.07 -2.91 -0.01 2.95 16 32 H 0.24 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.16 4.67 7.60 -2.91 -0.02 4.65 16 Total: -1.00 -68.93 316.29 7.11 -61.83 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.18 Total: 5.36 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 3.44 Total: -4.97 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.24 Total: -52.41 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.10 Total: -49.85 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 1.40 Total: -3.90 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -68.93 7.11 -61.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892692676.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.378 kcal (2) G-P(sol) polarization free energy of solvation -68.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds