Wall clock time and date at job start Tue Mar 31 2020 12:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39655 * 120.14230 * 247.54112 * 3 2 1 5 5 C 1.37937 * 119.86349 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.16329 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.85138 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47056 * 260.03970 * 7 6 5 9 9 C 1.47479 * 111.00206 * 265.97399 * 8 7 6 10 10 C 1.53507 * 87.93351 * 221.29310 * 9 8 7 11 11 C 1.50696 * 114.34700 * 139.68326 * 10 9 8 12 12 H 1.08000 * 120.00269 * 266.08061 * 11 10 9 13 13 C 1.37876 * 120.00087 * 86.07567 * 11 10 9 14 14 N 1.31513 * 119.99804 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00132 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46991 * 60.00133 * 15 13 11 17 17 H 1.48497 * 109.47553 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47448 * 300.00346 * 15 13 11 19 19 C 1.47477 * 111.00321 * 169.99962 * 8 7 6 20 20 C 1.38428 * 120.29490 * 0.04400 * 6 5 4 21 21 Br 1.89103 * 119.93546 * 179.97438 * 20 6 5 22 22 C 1.38055 * 120.13217 * 359.95944 * 20 6 5 23 23 H 1.08002 * 120.07290 * 359.74339 * 4 3 2 24 24 H 1.08000 * 119.91637 * 179.97438 * 5 4 3 25 25 H 1.08997 * 109.47722 * 20.03964 * 7 6 5 26 26 H 1.09005 * 109.47484 * 140.04884 * 7 6 5 27 27 H 1.08998 * 113.47858 * 336.06105 * 9 8 7 28 28 H 1.09003 * 113.47983 * 106.52535 * 9 8 7 29 29 H 1.09004 * 114.17266 * 272.38123 * 10 9 8 30 30 H 0.97003 * 119.99926 * 179.97438 * 14 13 11 31 31 H 1.08993 * 113.47626 * 253.47401 * 19 8 7 32 32 H 1.09000 * 113.47500 * 23.87880 * 19 8 7 33 33 H 1.08003 * 120.08232 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.4623 1.1161 5 6 4.6484 0.4609 1.1097 6 6 5.3380 0.0029 0.0011 7 6 6.8450 0.0039 0.0019 8 7 7.3343 1.1734 -0.7404 9 6 7.6026 0.8308 -2.1495 10 6 8.8754 1.6839 -2.0567 11 6 10.0719 1.0928 -2.7566 12 1 10.7760 0.4878 -2.2047 13 6 10.2678 1.3244 -4.1016 14 7 9.4106 2.0615 -4.7736 15 14 11.7505 0.5911 -4.9694 16 1 11.7041 -0.8894 -4.8633 17 1 11.7312 0.9851 -6.4010 18 1 12.9949 1.0941 -4.3338 19 6 8.7886 1.3417 -0.5627 20 6 4.6498 -0.4559 -1.1090 21 35 5.6026 -1.0788 -2.6190 22 6 3.2693 -0.4598 -1.1157 23 1 2.7324 0.8240 1.9808 24 1 5.1914 0.8181 1.9722 25 1 7.2078 0.0475 1.0287 26 1 7.2093 -0.9067 -0.4739 27 1 7.8009 -0.2292 -2.3085 28 1 6.8617 1.2301 -2.8422 29 1 8.7227 2.7394 -2.2824 30 1 9.5486 2.2247 -5.7198 31 1 9.0529 2.1741 0.0895 32 1 9.3033 0.4184 -0.2971 33 1 2.7332 -0.8183 -1.9821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137632911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:26 Heat of formation + Delta-G solvation = 84.804835 kcal Electronic energy + Delta-G solvation = -18020.522853 eV Core-core repulsion = 15093.325353 eV Total energy + Delta-G solvation = -2927.197501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 320.022 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11970 -40.04627 -37.63698 -34.89260 -33.83162 -33.21215 -30.74071 -30.02846 -27.58447 -26.48700 -25.01202 -23.62951 -22.59420 -20.46193 -19.81476 -18.63338 -17.03004 -16.90644 -16.73436 -16.12502 -15.66826 -15.46537 -15.14398 -14.90130 -14.53479 -14.25806 -13.97960 -13.91330 -13.53370 -13.42183 -13.16058 -12.89411 -12.68257 -12.38858 -12.24307 -11.88451 -11.87706 -11.53297 -11.22166 -10.93914 -10.67845 -10.26729 -9.96983 -9.64346 -9.48920 -8.09091 -6.18823 -0.38093 0.10594 0.65973 1.45030 1.45437 1.52997 1.56212 1.77586 2.45726 2.68857 2.75256 3.20656 3.47935 3.67686 3.80784 3.95260 4.17312 4.32433 4.37722 4.50600 4.59712 4.76466 4.77217 4.86224 4.94487 4.98315 5.07803 5.14798 5.32538 5.44227 5.59956 5.64094 5.70399 5.94003 6.35530 6.37270 6.46355 6.90387 7.48570 9.00059 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.004268 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.189129 B = 6559.604659 C = 7172.239193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.284 3.716 3 C -0.035 4.035 4 C -0.039 4.039 5 C -0.095 4.095 6 C -0.016 4.016 7 C 0.039 3.961 8 N -0.472 5.472 9 C 0.024 3.976 10 C 0.011 3.989 11 C -0.526 4.526 12 H 0.059 0.941 13 C 0.017 3.983 14 N -0.920 5.920 15 Si 0.949 3.051 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.269 1.269 19 C 0.012 3.988 20 C -0.104 4.104 21 Br -0.047 7.047 22 C -0.045 4.045 23 H 0.171 0.829 24 H 0.170 0.830 25 H 0.108 0.892 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 -6.945 11.777 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.031 4.031 3 C -0.039 4.039 4 C -0.060 4.060 5 C -0.114 4.114 6 C -0.019 4.019 7 C -0.089 4.089 8 N -0.194 5.194 9 C -0.105 4.105 10 C -0.008 4.008 11 C -0.564 4.564 12 H 0.078 0.922 13 C -0.182 4.182 14 N -0.559 5.559 15 Si 0.774 3.226 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.194 1.194 19 C -0.117 4.117 20 C -0.184 4.184 21 Br 0.039 6.961 22 C -0.067 4.067 23 H 0.189 0.811 24 H 0.188 0.812 25 H 0.127 0.873 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.465 -6.601 11.226 17.350 hybrid contribution 1.388 -0.809 -1.015 1.900 sum -10.077 -7.410 10.211 16.146 Atomic orbital electron populations 1.81287 1.13012 1.10172 1.08691 1.25595 0.92367 0.92476 0.92658 1.15841 0.83660 1.07436 0.96997 1.21596 0.93941 0.93664 0.96759 1.21275 0.93600 0.98259 0.98252 1.20075 0.95906 0.93388 0.92534 1.21898 0.90855 0.94431 1.01712 1.68864 1.14967 1.31232 1.04348 1.24123 0.97869 0.99069 0.89464 1.20119 0.93726 0.95175 0.91766 1.21349 1.09209 1.31471 0.94400 0.92246 1.25746 0.98661 0.95312 0.98521 1.70090 1.37566 1.39390 1.08839 0.85760 0.80395 0.79072 0.77349 1.19536 1.21399 1.19363 1.23833 0.88325 1.00592 0.98899 1.21739 0.94586 1.07662 0.94441 1.96863 1.74304 1.87261 1.37633 1.21128 0.91565 0.96075 0.97957 0.81122 0.81221 0.87340 0.92642 0.91871 0.93691 0.95676 0.93102 0.90477 0.91670 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.49 18.54 19.00 0.35 -11.14 16 2 C 0.28 5.84 15.33 88.33 1.35 7.19 16 3 C -0.03 -0.62 5.73 -21.36 -0.12 -0.74 16 4 C -0.04 -0.54 9.76 22.54 0.22 -0.32 16 5 C -0.09 -1.52 9.65 22.23 0.21 -1.30 16 6 C -0.02 -0.37 5.47 -19.79 -0.11 -0.48 16 7 C 0.04 1.05 4.68 85.56 0.40 1.45 16 8 N -0.47 -16.71 6.32 -932.53 -5.89 -22.60 16 9 C 0.02 1.04 4.96 83.57 0.41 1.45 16 10 C 0.01 0.56 3.76 -11.20 -0.04 0.51 16 11 C -0.53 -27.87 8.83 25.60 0.23 -27.64 16 12 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 13 C 0.02 0.92 5.46 84.65 0.46 1.38 16 14 N -0.92 -53.34 13.26 21.45 0.28 -53.05 16 15 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 C 0.01 0.45 7.25 83.57 0.61 1.06 16 20 C -0.10 -2.61 6.21 22.27 0.14 -2.47 16 21 Br -0.05 -1.43 27.16 -20.37 -0.55 -1.98 16 22 C -0.04 -0.94 9.49 22.55 0.21 -0.73 16 23 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 24 H 0.17 1.78 8.03 -2.91 -0.02 1.76 16 25 H 0.11 2.29 7.93 -2.39 -0.02 2.27 16 26 H 0.06 1.61 6.36 -2.38 -0.02 1.59 16 27 H 0.06 2.73 5.63 -2.39 -0.01 2.71 16 28 H 0.04 2.12 7.46 -2.39 -0.02 2.10 16 29 H 0.02 1.39 8.11 -2.38 -0.02 1.37 16 30 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.07 2.32 7.87 -2.39 -0.02 2.31 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -62.83 304.48 1.33 -61.50 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 1.13 Total: 3.34 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.98 Total: -20.64 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -5.25 Total: -86.79 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 35 Polarization: -1.43 SS G_CDS: -0.55 Total: -1.98 kcal Total: -62.83 1.33 -61.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137632911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.307 kcal (2) G-P(sol) polarization free energy of solvation -62.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds