Wall clock time and date at job start Tue Mar 31 2020 12:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99929 * 2 1 4 4 H 1.48507 * 109.47027 * 239.99983 * 3 2 1 5 5 H 1.48497 * 109.46907 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46939 * 119.99813 * 3 2 1 7 7 C 1.37875 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00034 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.50366 * 60.08000 * 9 7 2 11 11 C 1.53116 * 109.50113 * 299.99986 * 9 7 2 12 12 C 1.53123 * 109.15663 * 182.40539 * 11 9 7 13 13 C 1.53037 * 109.27922 * 57.65672 * 12 11 9 14 14 N 1.46840 * 109.52307 * 300.82028 * 13 12 11 15 15 C 1.46897 * 110.99962 * 185.83801 * 14 13 12 16 16 C 1.50706 * 109.46909 * 66.04747 * 15 14 13 17 17 S 1.76190 * 126.01620 * 269.97266 * 16 15 14 18 18 C 1.70978 * 90.30514 * 180.02562 * 17 16 15 19 19 Cl 1.73602 * 124.91147 * 180.02562 * 18 17 16 20 20 N 1.29163 * 110.16965 * 0.02562 * 18 17 16 21 21 C 1.31894 * 117.06997 * 359.97438 * 20 18 17 22 22 Cl 1.73605 * 122.75192 * 179.97438 * 21 20 18 23 23 C 1.46846 * 111.19970 * 61.74290 * 14 13 12 24 24 H 0.97000 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.52501 * 62.50163 * 11 9 7 26 26 H 1.09000 * 109.58067 * 302.34321 * 11 9 7 27 27 H 1.08996 * 109.50737 * 297.71138 * 12 11 9 28 28 H 1.09004 * 109.49861 * 177.60005 * 12 11 9 29 29 H 1.09001 * 109.46263 * 180.79882 * 13 12 11 30 30 H 1.09002 * 109.45910 * 60.83916 * 13 12 11 31 31 H 1.08999 * 109.47412 * 306.04854 * 15 14 13 32 32 H 1.09000 * 109.47584 * 186.04288 * 15 14 13 33 33 H 1.08995 * 109.46407 * 58.27531 * 23 14 13 34 34 H 1.09001 * 109.46275 * 178.24609 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6249 -2.5579 -0.8908 11 6 0.3710 -2.5813 1.2497 12 6 -0.3447 -3.9348 1.2725 13 6 0.6954 -5.0569 1.2399 14 7 1.5112 -4.9348 0.0251 15 6 2.4286 -6.0741 -0.1096 16 6 1.6343 -7.3346 -0.3364 17 16 1.0284 -8.4166 0.9151 18 6 0.3392 -9.4272 -0.2795 19 17 -0.5484 -10.8839 0.0429 20 7 0.5745 -8.9500 -1.4564 21 6 1.2663 -7.8289 -1.5222 22 17 1.6669 -7.0594 -3.0260 23 6 2.2449 -3.6629 0.0039 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3670 -1.7793 1.2291 26 1 0.9915 -2.4823 2.1404 27 1 -0.9959 -4.0168 0.4023 28 1 -0.9399 -4.0164 2.1820 29 1 0.1886 -6.0220 1.2417 30 1 1.3374 -4.9825 2.1177 31 1 3.0185 -6.1753 0.8013 32 1 3.0940 -5.9067 -0.9566 33 1 2.8798 -3.5951 0.8873 34 1 2.8636 -3.6155 -0.8923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139956377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:12 Heat of formation + Delta-G solvation = 33.208067 kcal Electronic energy + Delta-G solvation = -20098.221963 eV Core-core repulsion = 16823.534766 eV Total energy + Delta-G solvation = -3274.687197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 320.021 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14070 -38.32508 -37.30265 -36.54217 -34.24255 -32.26302 -30.45469 -29.74603 -26.62471 -25.03127 -24.53963 -22.07579 -21.64677 -20.24606 -18.91666 -18.62531 -16.56646 -16.33437 -15.78303 -15.23921 -14.97407 -14.60365 -14.22470 -14.14963 -13.44027 -12.93319 -12.70850 -12.53027 -12.42702 -12.18724 -11.91433 -11.71058 -11.39846 -11.28696 -11.08276 -10.95534 -10.75994 -10.73352 -10.26127 -10.13493 -9.89552 -9.61241 -9.49762 -9.22414 -8.83509 -8.74775 -8.32872 -7.84158 -5.99419 -4.06053 0.14250 0.36913 0.89622 1.41480 2.20904 2.25452 3.30873 3.36109 3.38006 4.27699 4.43864 4.53028 4.61961 5.05173 5.30598 5.44434 5.50672 5.62648 5.73068 5.96008 6.15335 6.29948 6.42346 6.62881 6.68276 6.87920 6.97660 7.15167 7.30130 7.50678 7.63659 7.73868 8.04448 8.14091 8.43795 8.97583 9.58422 11.06439 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.003338 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.839896 B = 8387.498397 C = 8977.160926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.036 0.964 11 C -0.111 4.111 12 C -0.115 4.115 13 C 0.056 3.944 14 N -0.529 5.529 15 C 0.124 3.876 16 C -0.182 4.182 17 S 0.230 5.770 18 C 0.068 3.932 19 Cl 0.031 6.969 20 N -0.453 5.453 21 C 0.131 3.869 22 Cl 0.015 6.985 23 C 0.070 3.930 24 H 0.260 0.740 25 H 0.092 0.908 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.023 0.977 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -19.079 2.483 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.054 0.946 11 C -0.149 4.149 12 C -0.153 4.153 13 C -0.072 4.072 14 N -0.254 5.254 15 C -0.006 4.006 16 C -0.305 4.305 17 S 0.479 5.521 18 C -0.235 4.235 19 Cl 0.059 6.941 20 N -0.171 5.171 21 C -0.027 4.027 22 Cl 0.043 6.957 23 C -0.056 4.056 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.041 0.959 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.180 -19.374 2.579 19.581 hybrid contribution 0.982 1.034 -0.326 1.463 sum 2.162 -18.340 2.253 18.604 Atomic orbital electron populations 1.69878 1.05835 1.26489 1.50387 1.24925 0.94822 0.98939 0.95071 0.86688 0.79614 0.83294 0.78547 1.20294 1.21331 1.20389 1.21081 0.92780 0.90584 1.51073 0.92847 1.18660 0.92556 0.90060 0.94977 0.94587 1.21668 1.00104 0.94639 0.98478 1.21658 0.97044 0.96247 1.00376 1.22192 0.95983 0.99012 0.90017 1.62053 1.23465 1.01453 1.38397 1.20568 0.92479 0.85353 1.02203 1.25906 1.07561 1.03432 0.93602 1.84211 1.46525 1.13074 1.08248 1.26602 1.05319 0.98315 0.93256 1.98436 1.72162 1.30014 1.93512 1.65375 1.15046 1.11576 1.25137 1.19944 1.00969 0.92181 0.89631 1.98426 1.91332 1.77378 1.28530 1.22365 0.96568 0.87580 0.99134 0.92964 0.88984 0.95078 0.92022 0.93357 0.92707 0.95467 0.93273 0.88000 0.95878 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.35 55.43 0.63 -24.21 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.69 8.56 -34.44 -0.29 -13.99 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.52 5.02 -26.61 -0.13 -2.65 16 12 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 13 C 0.06 0.92 5.30 -3.84 -0.02 0.90 16 14 N -0.53 -9.06 4.65 -236.12 -1.10 -10.15 16 15 C 0.12 1.71 5.21 -4.97 -0.03 1.69 16 16 C -0.18 -2.40 5.32 -35.92 -0.19 -2.59 16 17 S 0.23 2.47 21.70 -107.50 -2.33 0.13 16 18 C 0.07 0.82 8.03 51.64 0.41 1.24 16 19 Cl 0.03 0.31 29.33 -51.86 -1.52 -1.21 16 20 N -0.45 -6.46 10.56 -9.91 -0.10 -6.57 16 21 C 0.13 1.87 7.30 -19.14 -0.14 1.73 16 22 Cl 0.02 0.21 28.39 -51.86 -1.47 -1.26 16 23 C 0.07 1.38 4.68 -3.83 -0.02 1.36 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.80 5.76 -51.93 -0.30 0.50 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.10 1.35 7.45 -51.93 -0.39 0.97 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.23 8.01 -51.93 -0.42 0.82 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -27.76 320.32 -10.89 -38.64 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -3.92 Total: -4.17 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.87 Total: -11.86 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.57 Total: -40.93 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.33 Total: 0.13 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -2.99 Total: -2.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.76 -10.89 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139956377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.851 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds