Wall clock time and date at job start Tue Mar 31 2020 12:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99929 * 2 1 4 4 H 1.48507 * 109.47027 * 239.99983 * 3 2 1 5 5 H 1.48497 * 109.46907 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46939 * 119.99813 * 3 2 1 7 7 C 1.37875 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00034 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.50366 * 60.08000 * 9 7 2 11 11 C 1.53116 * 109.50113 * 299.99986 * 9 7 2 12 12 C 1.53123 * 109.15663 * 182.40539 * 11 9 7 13 13 C 1.53037 * 109.27922 * 57.65672 * 12 11 9 14 14 N 1.46840 * 109.52307 * 300.82028 * 13 12 11 15 15 C 1.46897 * 110.99962 * 185.83801 * 14 13 12 16 16 C 1.50706 * 109.46909 * 66.04747 * 15 14 13 17 17 S 1.76190 * 126.01620 * 269.97266 * 16 15 14 18 18 C 1.70978 * 90.30514 * 180.02562 * 17 16 15 19 19 Cl 1.73602 * 124.91147 * 180.02562 * 18 17 16 20 20 N 1.29163 * 110.16965 * 0.02562 * 18 17 16 21 21 C 1.31894 * 117.06997 * 359.97438 * 20 18 17 22 22 Cl 1.73605 * 122.75192 * 179.97438 * 21 20 18 23 23 C 1.46846 * 111.19970 * 61.74290 * 14 13 12 24 24 H 0.97000 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.52501 * 62.50163 * 11 9 7 26 26 H 1.09000 * 109.58067 * 302.34321 * 11 9 7 27 27 H 1.08996 * 109.50737 * 297.71138 * 12 11 9 28 28 H 1.09004 * 109.49861 * 177.60005 * 12 11 9 29 29 H 1.09001 * 109.46263 * 180.79882 * 13 12 11 30 30 H 1.09002 * 109.45910 * 60.83916 * 13 12 11 31 31 H 1.08999 * 109.47412 * 306.04854 * 15 14 13 32 32 H 1.09000 * 109.47584 * 186.04288 * 15 14 13 33 33 H 1.08995 * 109.46407 * 58.27531 * 23 14 13 34 34 H 1.09001 * 109.46275 * 178.24609 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6249 -2.5579 -0.8908 11 6 0.3710 -2.5813 1.2497 12 6 -0.3447 -3.9348 1.2725 13 6 0.6954 -5.0569 1.2399 14 7 1.5112 -4.9348 0.0251 15 6 2.4286 -6.0741 -0.1096 16 6 1.6343 -7.3346 -0.3364 17 16 1.0284 -8.4166 0.9151 18 6 0.3392 -9.4272 -0.2795 19 17 -0.5484 -10.8839 0.0429 20 7 0.5745 -8.9500 -1.4564 21 6 1.2663 -7.8289 -1.5222 22 17 1.6669 -7.0594 -3.0260 23 6 2.2449 -3.6629 0.0039 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3670 -1.7793 1.2291 26 1 0.9915 -2.4823 2.1404 27 1 -0.9959 -4.0168 0.4023 28 1 -0.9399 -4.0164 2.1820 29 1 0.1886 -6.0220 1.2417 30 1 1.3374 -4.9825 2.1177 31 1 3.0185 -6.1753 0.8013 32 1 3.0940 -5.9067 -0.9566 33 1 2.8798 -3.5951 0.8873 34 1 2.8636 -3.6155 -0.8923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139956377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:11 Heat of formation + Delta-G solvation = 16.946178 kcal Electronic energy + Delta-G solvation = -20098.927132 eV Core-core repulsion = 16823.534766 eV Total energy + Delta-G solvation = -3275.392366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 320.021 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15251 -39.76911 -38.17752 -37.57327 -35.88249 -33.94635 -31.86567 -31.31901 -27.72798 -26.90792 -25.70619 -23.53364 -23.21245 -21.34593 -20.34591 -19.81916 -18.40844 -17.41893 -17.06058 -16.58348 -16.19995 -16.02356 -15.62228 -15.43729 -14.96513 -14.45363 -14.23408 -13.83615 -13.62684 -13.57486 -13.26708 -12.81732 -12.72531 -12.66201 -12.57260 -12.34905 -12.31174 -12.11868 -11.88523 -11.70228 -11.37094 -11.09137 -10.92145 -10.68160 -10.54826 -10.33418 -9.84304 -9.17604 -8.04649 -6.18458 -0.82070 -0.52862 -0.07086 0.51081 1.19965 1.25197 1.44319 1.45131 1.52438 2.45253 3.07241 3.22839 3.42479 3.62370 4.00245 4.16445 4.22498 4.42734 4.47894 4.58701 4.63167 4.76048 4.90080 4.99842 5.08871 5.20081 5.40856 5.54528 5.67057 5.95459 6.02067 6.13853 6.23098 6.24660 6.46955 6.94757 7.49499 8.99568 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.003338 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.839896 B = 8387.498397 C = 8977.160926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.053 3.947 10 H -0.006 1.006 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.061 3.939 14 N -0.543 5.543 15 C 0.127 3.873 16 C -0.200 4.200 17 S 0.301 5.699 18 C 0.060 3.940 19 Cl 0.049 6.951 20 N -0.482 5.482 21 C 0.122 3.878 22 Cl 0.004 6.996 23 C 0.085 3.915 24 H 0.259 0.741 25 H 0.055 0.945 26 H 0.028 0.972 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.028 0.972 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -20.545 3.941 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.012 0.988 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.067 4.067 14 N -0.268 5.268 15 C -0.002 4.002 16 C -0.324 4.324 17 S 0.551 5.449 18 C -0.242 4.242 19 Cl 0.076 6.924 20 N -0.201 5.201 21 C -0.037 4.037 22 Cl 0.032 6.968 23 C -0.042 4.042 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.046 0.954 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.028 -20.866 4.050 21.352 hybrid contribution 0.668 1.397 -0.751 1.721 sum 2.697 -19.469 3.298 19.930 Atomic orbital electron populations 1.70036 1.07179 1.26996 1.51304 1.25697 0.95587 1.02242 0.94937 0.85717 0.78406 0.79329 0.78808 1.19801 1.21318 1.19517 1.21503 0.93107 0.92030 1.50592 0.92699 1.18576 0.93005 0.91277 0.93710 0.98763 1.21457 0.99155 0.95964 0.97574 1.21560 0.97470 0.94944 1.00758 1.22159 0.95502 0.98813 0.90256 1.61887 1.24338 1.01458 1.39117 1.20550 0.92083 0.84168 1.03437 1.25924 1.08060 1.03872 0.94496 1.83933 1.44508 1.10839 1.05596 1.26938 1.04904 0.98908 0.93477 1.98445 1.71672 1.28970 1.93289 1.65379 1.16143 1.12099 1.26488 1.20032 1.01485 0.92558 0.89649 1.98416 1.91432 1.77586 1.29396 1.21984 0.95292 0.87572 0.99315 0.93211 0.92603 0.95340 0.93744 0.91046 0.90441 0.94068 0.90948 0.87864 0.95364 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.77 11.35 21.45 0.24 -52.52 16 2 C 0.01 0.77 5.30 84.65 0.45 1.22 16 3 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.53 -28.72 8.56 25.60 0.22 -28.50 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.05 2.61 2.26 -11.49 -0.03 2.58 16 10 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 11 C -0.10 -4.75 5.02 30.67 0.15 -4.60 16 12 C -0.11 -4.02 6.09 30.65 0.19 -3.83 16 13 C 0.06 1.84 5.30 86.33 0.46 2.29 16 14 N -0.54 -17.78 4.65 -900.94 -4.19 -21.96 16 15 C 0.13 3.20 5.21 85.56 0.45 3.65 16 16 C -0.20 -4.81 5.32 24.64 0.13 -4.68 16 17 S 0.30 5.45 21.70 -56.49 -1.23 4.22 16 18 C 0.06 1.31 8.03 130.63 1.05 2.36 16 19 Cl 0.05 0.85 29.33 -2.72 -0.08 0.77 16 20 N -0.48 -13.03 10.56 -185.28 -1.96 -14.98 16 21 C 0.12 3.31 7.30 83.64 0.61 3.92 16 22 Cl 0.00 0.10 28.39 -2.72 -0.08 0.02 16 23 C 0.09 3.32 4.68 86.33 0.40 3.72 16 24 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.06 2.97 6.15 -2.38 -0.01 2.96 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.08 2.00 5.76 -2.39 -0.01 1.99 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.10 2.57 7.45 -2.39 -0.02 2.55 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -60.96 320.32 -0.05 -61.00 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.13 Total: 0.20 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 4.08 Total: -21.87 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -5.90 Total: -89.47 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.23 Total: 4.22 kcal Atomic # 17 Polarization: 0.95 SS G_CDS: -0.16 Total: 0.79 kcal Total: -60.96 -0.05 -61.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139956377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.951 kcal (2) G-P(sol) polarization free energy of solvation -60.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds