Wall clock time and date at job start Tue Mar 31 2020 13:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34670 * 117.00161 * 2 1 4 4 O 1.21435 * 119.99597 * 359.97438 * 3 2 1 5 5 C 1.48045 * 120.00211 * 180.02562 * 3 2 1 6 6 C 1.39823 * 120.91967 * 0.02562 * 5 3 2 7 7 C 1.38305 * 118.98267 * 179.97438 * 6 5 3 8 8 Cl 1.73610 * 119.56567 * 180.02562 * 7 6 5 9 9 N 1.31916 * 120.87016 * 359.74938 * 7 6 5 10 10 C 1.31811 * 122.03803 * 0.52751 * 9 7 6 11 11 C 1.50701 * 119.54246 * 179.75306 * 10 9 7 12 12 F 1.39898 * 109.47723 * 119.44995 * 11 10 9 13 13 F 1.39902 * 109.47051 * 239.45189 * 11 10 9 14 14 N 1.46499 * 109.46658 * 359.44722 * 11 10 9 15 15 C 1.46508 * 119.99919 * 245.59633 * 14 11 10 16 16 C 1.36934 * 120.00213 * 65.60226 * 14 11 10 17 17 H 1.08001 * 120.00057 * 24.60511 * 16 14 11 18 18 C 1.38817 * 120.00211 * 204.60765 * 16 14 11 19 19 N 1.31614 * 119.99690 * 14.80128 * 18 16 14 20 20 Si 1.86789 * 119.99987 * 194.79741 * 18 16 14 21 21 H 1.48504 * 109.47658 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47269 * 120.00070 * 20 18 16 23 23 H 1.48504 * 109.47406 * 240.00108 * 20 18 16 24 24 C 1.38130 * 120.92133 * 359.46675 * 10 9 7 25 25 H 1.09003 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47085 * 299.99367 * 1 2 3 27 27 H 1.08997 * 109.47399 * 60.00288 * 1 2 3 28 28 H 1.07997 * 120.51156 * 0.02562 * 6 5 3 29 29 H 1.09006 * 109.46850 * 89.81794 * 15 14 11 30 30 H 1.09000 * 109.46829 * 209.81375 * 15 14 11 31 31 H 1.09001 * 109.47197 * 329.81864 * 15 14 11 32 32 H 0.97000 * 120.00132 * 180.02562 * 19 18 16 33 33 H 1.08006 * 120.49083 * 180.27870 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5418 1.2774 -0.0006 6 6 4.3221 0.1171 -0.0017 7 6 5.7000 0.2362 -0.0027 8 17 6.6834 -1.1946 -0.0047 9 7 6.2769 1.4225 -0.0076 10 6 5.5779 2.5400 -0.0015 11 6 6.2953 3.8652 -0.0020 12 9 5.9413 4.5869 -1.1470 13 9 5.9335 4.5918 1.1375 14 7 7.7424 3.6370 0.0035 15 6 8.5437 4.0433 1.1608 16 6 8.3462 3.0440 -1.0731 17 1 7.8866 3.1005 -2.0488 18 6 9.5489 2.3703 -0.9103 19 7 9.9639 2.0467 0.2960 20 14 10.5782 1.9229 -2.4035 21 1 9.8955 2.3948 -3.6349 22 1 11.9111 2.5688 -2.2974 23 1 10.7461 0.4487 -2.4653 24 6 4.1968 2.5133 -0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.8560 -0.8571 -0.0025 29 1 8.5924 3.2216 1.8755 30 1 9.5510 4.3000 0.8331 31 1 8.0837 4.9103 1.6349 32 1 10.8045 1.5762 0.4098 33 1 3.6309 3.4333 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165091994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:53 Heat of formation + Delta-G solvation = -101.915030 kcal Electronic energy + Delta-G solvation = -25169.250603 eV Core-core repulsion = 20894.154478 eV Total energy + Delta-G solvation = -4275.096126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.053 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.20542 -46.29733 -40.91074 -39.68738 -36.73598 -36.35185 -35.25602 -32.94251 -31.65496 -30.70864 -28.19978 -26.43712 -25.71023 -24.70981 -22.94621 -21.87889 -20.53914 -18.52116 -17.75692 -17.31429 -16.75905 -16.61157 -16.34370 -15.94708 -15.78115 -15.48457 -14.92594 -14.28833 -14.22999 -13.81852 -13.47293 -13.22811 -12.89146 -12.83413 -12.67144 -12.47016 -12.19821 -12.13725 -11.49203 -11.44594 -11.08610 -11.06390 -10.99702 -10.87100 -10.86079 -10.56693 -10.08906 -10.01153 -9.95063 -9.24533 -8.94607 -8.65387 -7.14708 -5.85525 -3.34361 0.47750 0.85322 1.98876 2.33753 2.39000 3.35044 3.42954 3.45127 3.66032 3.72484 4.24910 4.39149 4.73862 4.76806 4.83886 4.91795 4.92157 4.99985 5.21285 5.24649 5.32775 5.47287 5.62964 5.80057 5.94055 6.03160 6.24436 6.66593 7.19599 7.42940 7.53796 7.74198 7.93652 8.15542 9.01235 9.56875 10.05378 11.21292 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.005221 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.749513 B = 5362.043860 C = 6516.369622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.518 3.482 4 O -0.494 6.494 5 C -0.082 4.082 6 C -0.098 4.098 7 C 0.162 3.838 8 Cl -0.019 7.019 9 N -0.348 5.348 10 C 0.094 3.906 11 C 0.561 3.439 12 F -0.201 7.201 13 F -0.193 7.193 14 N -0.586 5.586 15 C 0.157 3.843 16 C -0.252 4.252 17 H 0.071 0.929 18 C 0.029 3.971 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.287 1.287 24 C -0.090 4.090 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.158 0.842 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.255 0.745 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 -5.479 1.056 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.362 3.638 4 O -0.381 6.381 5 C -0.091 4.091 6 C -0.120 4.120 7 C -0.004 4.004 8 Cl 0.010 6.990 9 N -0.057 5.057 10 C -0.050 4.050 11 C 0.434 3.566 12 F -0.183 7.183 13 F -0.174 7.174 14 N -0.311 5.311 15 C 0.014 3.986 16 C -0.380 4.380 17 H 0.089 0.911 18 C -0.172 4.172 19 N -0.523 5.523 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.214 1.214 24 C -0.111 4.111 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.175 0.825 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.360 -5.292 1.128 14.414 hybrid contribution -0.521 -0.504 -0.714 1.017 sum -13.881 -5.796 0.415 15.048 Atomic orbital electron populations 1.23334 0.75515 1.03988 1.02853 1.86537 1.23880 1.32186 1.84172 1.20902 0.88353 0.81704 0.72870 1.90853 1.66329 1.35965 1.44951 1.19163 0.89632 0.94060 1.06240 1.22173 0.92466 0.99819 0.97524 1.21643 0.87937 0.89948 1.00885 1.98413 1.71743 1.32461 1.96388 1.66915 1.39734 0.95942 1.03130 1.22356 0.89141 0.95360 0.98124 1.17848 0.86637 0.80925 0.71189 1.93069 1.92611 1.79690 1.52920 1.92945 1.92419 1.79690 1.52368 1.44877 0.97142 1.68525 1.20579 1.20907 0.94335 0.95404 0.88002 1.18893 1.03735 1.29369 0.85989 0.91098 1.24951 0.99435 0.96458 0.96403 1.70098 1.21648 1.40378 1.20143 0.86204 0.80123 0.77953 0.82356 1.20088 1.21350 1.21367 1.22269 0.95179 0.98339 0.95340 0.87731 0.91613 0.91596 0.82476 0.94528 0.92086 0.96950 0.93524 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.92 9.92 -40.41 -0.40 -4.32 16 3 C 0.52 7.11 7.92 34.75 0.28 7.39 16 4 O -0.49 -7.68 16.23 -19.22 -0.31 -7.99 16 5 C -0.08 -1.23 5.91 -104.67 -0.62 -1.84 16 6 C -0.10 -1.43 9.47 -38.96 -0.37 -1.79 16 7 C 0.16 2.91 7.27 -17.49 -0.13 2.79 16 8 Cl -0.02 -0.32 29.10 -51.86 -1.51 -1.83 16 9 N -0.35 -7.54 8.43 -6.66 -0.06 -7.59 16 10 C 0.09 1.93 6.09 -82.64 -0.50 1.43 16 11 C 0.56 12.51 2.35 -5.19 -0.01 12.50 16 12 F -0.20 -4.45 16.82 2.25 0.04 -4.41 16 13 F -0.19 -4.03 15.47 2.25 0.03 -4.00 16 14 N -0.59 -14.73 2.71 -180.79 -0.49 -15.22 16 15 C 0.16 3.80 8.74 59.85 0.52 4.32 16 16 C -0.25 -6.72 8.00 -15.06 -0.12 -6.84 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.03 0.77 5.01 -17.43 -0.09 0.69 16 19 N -0.88 -24.27 10.95 55.49 0.61 -23.66 16 20 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.09 -1.53 9.19 -39.01 -0.36 -1.89 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.16 1.76 7.71 -52.49 -0.40 1.36 16 29 H 0.04 0.94 7.61 -51.93 -0.40 0.55 16 30 H 0.06 1.54 7.14 -51.93 -0.37 1.17 16 31 H 0.01 0.26 7.06 -51.93 -0.37 -0.10 16 32 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 33 H 0.16 2.45 7.74 -52.48 -0.41 2.04 16 LS Contribution 318.84 15.07 4.80 4.80 Total: -1.00 -30.03 318.84 -5.40 -35.43 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -2.76 Total: -5.66 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: -0.33 Total: 18.08 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.06 Total: -46.47 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.71 Total: -12.31 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.03 -5.40 -35.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165091994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.487 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds