Wall clock time and date at job start Tue Mar 31 2020 12:51:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13606 * 1
3 3 C 1.43202 * 179.97438 * 2 1
4 4 C 1.43192 * 119.99967 * 318.02036 * 3 2 1
5 5 N 3.51033 * 140.68701 * 318.02323 * 2 1 3
6 6 C 1.41143 * 119.99460 * 138.01759 * 3 2 1
7 7 C 1.38973 * 119.99802 * 185.26615 * 6 3 2
8 8 H 1.07997 * 119.99658 * 341.41838 * 7 6 3
9 9 C 1.40848 * 119.99696 * 161.68498 * 7 6 3
10 10 N 1.30320 * 120.00418 * 350.62159 * 9 7 6
11 11 Si 1.86806 * 119.99615 * 170.62025 * 9 7 6
12 12 H 1.48502 * 109.46940 * 0.02562 * 11 9 7
13 13 H 1.48500 * 109.46806 * 119.99927 * 11 9 7
14 14 H 1.48497 * 109.47001 * 240.00222 * 11 9 7
15 15 N 1.38388 * 120.00431 * 5.27466 * 6 3 2
16 16 C 1.39154 * 120.00445 * 118.51598 * 15 6 3
17 17 C 1.39118 * 119.70061 * 353.60542 * 16 15 6
18 18 C 1.38324 * 119.09753 * 179.77006 * 17 16 15
19 19 C 1.38871 * 118.49777 * 0.49778 * 18 17 16
20 20 C 1.38057 * 119.32636 * 359.74475 * 19 18 17
21 21 S 1.76202 * 119.57057 * 179.97438 * 20 19 18
22 22 O 1.42100 * 106.40250 * 23.56164 * 21 20 19
23 23 O 1.42100 * 106.39795 * 156.48417 * 21 20 19
24 24 O 1.52201 * 107.21712 * 270.02116 * 21 20 19
25 25 N 1.31947 * 120.85250 * 0.02562 * 20 19 18
26 26 H 0.96998 * 120.00497 * 185.03722 * 10 9 7
27 27 H 0.97002 * 119.99914 * 298.51954 * 15 6 3
28 28 H 1.08000 * 120.45382 * 0.02562 * 17 16 15
29 29 H 1.07994 * 120.74970 * 180.21912 * 18 17 16
30 30 H 1.08003 * 120.33303 * 179.76895 * 19 18 17
31 31 H 0.96697 * 113.99808 * 180.02562 * 24 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.5681 0.0006 0.0000
4 6 3.2844 -0.9209 0.8294
5 7 3.8520 -1.6533 1.4875
6 6 3.2733 0.9096 -0.8177
7 6 4.6586 0.8383 -0.9015
8 1 5.2192 0.3134 -0.1422
9 6 5.3319 1.4554 -1.9738
10 7 4.6551 1.9334 -2.9797
11 14 7.1951 1.5885 -1.9541
12 1 7.7222 0.9726 -0.7099
13 1 7.7545 0.8789 -3.1326
14 1 7.5896 3.0192 -2.0044
15 7 2.5853 1.8720 -1.5357
16 6 2.8204 3.2219 -1.2929
17 6 3.6464 3.5990 -0.2389
18 6 3.8754 4.9441 -0.0118
19 6 3.2599 5.8706 -0.8432
20 6 2.4481 5.4258 -1.8674
21 16 1.6634 6.5958 -2.9258
22 8 2.4436 7.7817 -2.8614
23 8 1.3845 5.9138 -4.1409
24 8 0.3160 6.9335 -2.3035
25 7 2.2514 4.1358 -2.0634
26 1 5.1210 2.2923 -3.7510
27 1 1.9390 1.6056 -2.2083
28 1 4.1059 2.8516 0.3909
29 1 4.5147 5.2666 0.7966
30 1 3.4151 6.9285 -0.6903
31 1 -0.2018 7.5738 -2.8103
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001169081142.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:51:24
Heat of formation + Delta-G solvation = -42.865706 kcal
Electronic energy + Delta-G solvation = -23769.966081 eV
Core-core repulsion = 19950.163419 eV
Total energy + Delta-G solvation = -3819.802662 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 320.041 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.36237 -39.25666 -38.92295 -38.35310 -37.05203 -37.02785 -36.55332 -35.19632
-33.54934 -32.66654 -30.27651 -28.87884 -25.30611 -24.41864 -23.01740 -22.11969
-20.82443 -19.40662 -19.33454 -18.87275 -18.59452 -17.77274 -17.30555 -16.98680
-16.68317 -16.16150 -15.85496 -15.40633 -15.07262 -14.63014 -14.39630 -14.21689
-14.11387 -13.90606 -13.54490 -13.44097 -13.41309 -13.37244 -13.29004 -13.25661
-13.13966 -13.11371 -12.77142 -12.73609 -12.50316 -12.11889 -11.67912 -11.59121
-10.92032 -10.53700 -9.94923 -9.31511 -8.53369 -7.20101 -0.68098 -0.22010
0.29957 0.71936 1.34852 1.49211 1.54290 1.99910 2.04623 2.07379
2.17026 2.21745 2.29079 2.53577 2.60910 2.88100 3.36501 3.41591
3.79151 3.95853 4.14391 4.26118 4.35682 4.44021 4.59877 4.63145
4.94531 5.20522 5.32660 5.32838 5.43096 5.67757 5.97214 6.06329
6.42024 6.66025 7.08409 7.21080 7.32849 7.65396
Molecular weight = 320.04amu
Principal moments of inertia in cm(-1)
A = 0.013473 B = 0.005131 C = 0.004196
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2077.675870 B = 5456.206569 C = 6671.794299
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C 0.315 3.685
3 C -0.322 4.322
4 C 0.331 3.669
5 N -0.552 5.552
6 C 0.373 3.627
7 C -0.363 4.363
8 H 0.116 0.884
9 C 0.042 3.958
10 N -0.720 5.720
11 Si 0.978 3.022
12 H -0.246 1.246
13 H -0.260 1.260
14 H -0.255 1.255
15 N -0.643 5.643
16 C 0.409 3.591
17 C -0.178 4.178
18 C -0.054 4.054
19 C -0.145 4.145
20 C -0.419 4.419
21 S 2.773 3.227
22 O -0.975 6.975
23 O -0.986 6.986
24 O -0.883 6.883
25 N -0.482 5.482
26 H 0.312 0.688
27 H 0.403 0.597
28 H 0.151 0.849
29 H 0.181 0.819
30 H 0.178 0.822
31 H 0.481 0.519
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.539 15.699 -2.321 16.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.241 5.241
2 C 0.009 3.991
3 C -0.341 4.341
4 C 0.025 3.975
5 N -0.235 5.235
6 C 0.268 3.732
7 C -0.390 4.390
8 H 0.133 0.867
9 C -0.190 4.190
10 N -0.338 5.338
11 Si 0.796 3.204
12 H -0.169 1.169
13 H -0.184 1.184
14 H -0.179 1.179
15 N -0.267 5.267
16 C 0.170 3.830
17 C -0.203 4.203
18 C -0.080 4.080
19 C -0.171 4.171
20 C -0.639 4.639
21 S 2.858 3.142
22 O -0.973 6.973
23 O -0.985 6.985
24 O -0.757 6.757
25 N -0.200 5.200
26 H 0.125 0.875
27 H 0.240 0.760
28 H 0.168 0.832
29 H 0.198 0.802
30 H 0.195 0.805
31 H 0.356 0.644
Dipole moment (debyes) X Y Z Total
from point charges 2.145 14.493 -2.254 14.824
hybrid contribution 0.976 -0.205 -0.038 0.998
sum 3.121 14.289 -2.292 14.804
Atomic orbital electron populations
1.81069 1.13034 1.14226 1.15810 1.25339 0.91989 0.90950 0.90832
1.12895 0.81717 1.15851 1.23627 1.24739 0.91715 0.90535 0.90538
1.81091 1.10251 1.15353 1.16808 1.16705 0.89635 0.83517 0.83294
1.20632 0.91792 1.20975 1.05577 0.86654 1.27171 1.06958 0.91088
0.93747 1.69553 1.42339 1.17868 1.04049 0.85111 0.74059 0.80168
0.81016 1.16878 1.18408 1.17915 1.41114 1.43713 1.00704 1.41158
1.18321 0.90453 0.84719 0.89501 1.22206 1.00244 0.98975 0.98910
1.21900 0.96516 0.91019 0.98545 1.22031 0.97455 1.03049 0.94542
1.32809 1.12479 1.04575 1.14000 0.99357 0.72247 0.72076 0.70564
1.93618 1.71947 1.45828 1.85948 1.93590 1.83225 1.76206 1.45464
1.85486 1.50689 1.70304 1.69222 1.67057 1.25667 1.00394 1.26918
0.87537 0.76043 0.83153 0.80154 0.80462 0.64429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.56 -26.48 18.54 19.01 0.35 -26.13 16
2 C 0.31 14.19 14.82 88.33 1.31 15.50 16
3 C -0.32 -13.61 5.88 -20.08 -0.12 -13.72 16
4 C 0.33 14.48 13.88 88.32 1.23 15.70 16
5 N -0.55 -25.03 18.54 19.01 0.35 -24.68 16
6 C 0.37 14.75 4.93 39.00 0.19 14.94 16
7 C -0.36 -13.49 7.04 23.09 0.16 -13.32 16
8 H 0.12 4.28 6.96 -2.91 -0.02 4.26 16
9 C 0.04 1.44 4.76 85.56 0.41 1.84 16
10 N -0.72 -26.52 10.81 21.98 0.24 -26.28 16
11 Si 0.98 26.89 29.58 68.60 2.03 28.92 16
12 H -0.25 -6.77 7.11 99.48 0.71 -6.06 16
13 H -0.26 -7.14 7.11 99.48 0.71 -6.44 16
14 H -0.26 -6.82 7.11 99.48 0.71 -6.11 16
15 N -0.64 -25.30 3.31 -184.71 -0.61 -25.91 16
16 C 0.41 15.27 6.01 133.01 0.80 16.07 16
17 C -0.18 -5.72 8.58 22.50 0.19 -5.53 16
18 C -0.05 -1.34 10.17 22.44 0.23 -1.11 16
19 C -0.15 -3.65 9.55 22.38 0.21 -3.43 16
20 C -0.42 -12.69 6.85 84.63 0.58 -12.11 16
21 S 2.77 64.99 6.02 -56.49 -0.34 64.65 16
22 O -0.98 -23.69 17.24 -118.78 -2.05 -25.74 16
23 O -0.99 -30.99 17.84 -118.78 -2.12 -33.11 16
24 O -0.88 -14.06 13.45 -118.26 -1.59 -15.65 16
25 N -0.48 -17.87 10.14 -190.63 -1.93 -19.80 16
26 H 0.31 10.57 8.29 -92.71 -0.77 9.80 16
27 H 0.40 16.41 8.94 -92.71 -0.83 15.58 16
28 H 0.15 4.76 6.23 -2.91 -0.02 4.74 16
29 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16
30 H 0.18 3.17 7.60 -2.91 -0.02 3.15 16
31 H 0.48 1.42 9.03 -87.93 -0.79 0.62 16
Total: -1.00 -65.62 314.38 -0.83 -66.46
By element:
Atomic # 1 Polarization: 22.79 SS G_CDS: -0.35 Total: 22.43 kcal
Atomic # 6 Polarization: 9.64 SS G_CDS: 5.19 Total: 14.83 kcal
Atomic # 7 Polarization: -121.20 SS G_CDS: -1.60 Total: -122.80 kcal
Atomic # 8 Polarization: -68.73 SS G_CDS: -5.76 Total: -74.49 kcal
Atomic # 14 Polarization: 26.89 SS G_CDS: 2.03 Total: 28.92 kcal
Atomic # 16 Polarization: 64.99 SS G_CDS: -0.34 Total: 64.65 kcal
Total: -65.62 -0.83 -66.46 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169081142.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.592 kcal
(2) G-P(sol) polarization free energy of solvation -65.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.458 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.866 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds