Wall clock time and date at job start Tue Mar 31 2020 13:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37167 * 119.99931 * 2 1 4 4 H 1.07995 * 120.00036 * 213.65803 * 3 2 1 5 5 C 1.38885 * 119.99745 * 33.65541 * 3 2 1 6 6 N 1.31465 * 120.00018 * 5.60403 * 5 3 2 7 7 Si 1.86802 * 119.99847 * 185.60579 * 5 3 2 8 8 H 1.48502 * 109.47353 * 59.99815 * 7 5 3 9 9 H 1.48494 * 109.47291 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47010 * 300.00089 * 7 5 3 11 11 C 1.34771 * 120.00073 * 179.97438 * 2 1 3 12 12 O 1.21600 * 120.00330 * 179.97438 * 11 2 1 13 13 N 1.34779 * 120.00243 * 0.02562 * 11 2 1 14 14 C 1.40101 * 120.00027 * 183.96250 * 13 11 2 15 15 C 1.38865 * 120.00715 * 144.76052 * 14 13 11 16 16 C 1.38100 * 120.00206 * 180.23157 * 15 14 13 17 17 C 1.38702 * 120.02755 * 359.49142 * 16 15 14 18 18 O 1.36000 * 119.98675 * 180.25261 * 17 16 15 19 19 C 1.42896 * 117.00439 * 0.25757 * 18 17 16 20 20 F 1.39907 * 109.46971 * 300.00026 * 19 18 17 21 21 F 1.39903 * 109.47061 * 59.99386 * 19 18 17 22 22 C 1.38807 * 120.01930 * 0.50850 * 17 16 15 23 23 Cl 1.73601 * 119.99933 * 179.72167 * 22 17 16 24 24 C 1.38202 * 119.99576 * 359.74822 * 22 17 16 25 25 H 1.08997 * 109.47488 * 264.66558 * 1 2 3 26 26 H 1.08997 * 109.47405 * 24.67331 * 1 2 3 27 27 H 1.09003 * 109.47131 * 144.66437 * 1 2 3 28 28 H 0.97005 * 120.00122 * 180.02562 * 6 5 3 29 29 H 0.97002 * 120.00016 * 3.96011 * 13 11 2 30 30 H 1.07997 * 120.00093 * 359.95102 * 15 14 13 31 31 H 1.08000 * 119.98888 * 179.74219 * 16 15 14 32 32 H 1.08998 * 109.47339 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.00722 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1508 1.1879 0.0000 4 1 3.0950 1.2663 -0.5184 5 6 1.6309 2.2898 0.6666 6 7 0.5392 2.1665 1.3886 7 14 2.4829 3.9472 0.5372 8 1 2.5225 4.3738 -0.8847 9 1 1.7346 4.9521 1.3343 10 1 3.8687 3.8334 1.0586 11 6 2.1389 -1.1671 0.0005 12 8 3.3549 -1.1672 0.0001 13 7 1.4650 -2.3344 0.0005 14 6 2.1630 -3.5462 0.0849 15 6 1.6177 -4.6145 0.7847 16 6 2.3081 -5.8074 0.8719 17 6 3.5413 -5.9426 0.2517 18 8 4.2181 -7.1194 0.3338 19 6 3.5969 -8.1751 1.0697 20 9 3.3940 -7.7652 2.3919 21 9 2.3655 -8.4895 0.4848 22 6 4.0874 -4.8754 -0.4481 23 17 5.6343 -5.0429 -1.2180 24 6 3.3998 -3.6795 -0.5314 25 1 -0.3634 -0.0955 1.0232 26 1 -0.3634 0.9338 -0.4290 27 1 -0.3633 -0.8384 -0.5944 28 1 0.1759 2.9362 1.8539 29 1 0.4968 -2.3355 -0.0579 30 1 0.6558 -4.5110 1.2647 31 1 1.8856 -6.6367 1.4198 32 1 4.2408 -9.0545 1.0571 33 1 3.8243 -2.8492 -1.0762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192307459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:24 Heat of formation + Delta-G solvation = -151.815547 kcal Electronic energy + Delta-G solvation = -24334.670771 eV Core-core repulsion = 20057.410797 eV Total energy + Delta-G solvation = -4277.259974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.26758 -48.25817 -41.68654 -40.62106 -38.66537 -37.56390 -36.69776 -35.29428 -33.51645 -31.96609 -30.18459 -28.18599 -27.12283 -26.17197 -24.28621 -23.50255 -21.57139 -20.11525 -19.72151 -19.09533 -18.84448 -18.75066 -17.93468 -17.17636 -16.96571 -16.43607 -16.03145 -15.82581 -15.78145 -15.42745 -14.98394 -14.84436 -14.63012 -14.59348 -14.47222 -14.07985 -13.93017 -13.54559 -13.24236 -13.17140 -13.00285 -12.79340 -12.70369 -12.43260 -12.40607 -12.12470 -11.96224 -11.05618 -10.95889 -10.80834 -9.94707 -9.63076 -8.90351 -8.31873 -6.03823 -0.00601 0.11008 1.02773 1.41969 1.44436 1.51692 1.57126 1.96568 2.19466 2.43184 2.57073 2.60210 3.13946 3.47749 3.50537 3.67285 3.74081 3.86122 4.07782 4.26078 4.44717 4.55824 4.61616 4.92711 4.95491 5.11899 5.25508 5.31340 5.45544 5.63957 5.84280 5.94005 6.31307 6.78087 7.18784 7.51127 8.06855 8.73701 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.003204 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.186945 B = 8736.496104 C = 9475.825536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.477 5.477 3 C -0.329 4.329 4 H 0.070 0.930 5 C -0.001 4.001 6 N -0.902 5.902 7 Si 0.989 3.011 8 H -0.265 1.265 9 H -0.272 1.272 10 H -0.280 1.280 11 C 0.651 3.349 12 O -0.641 6.641 13 N -0.678 5.678 14 C 0.156 3.844 15 C -0.102 4.102 16 C -0.153 4.153 17 C 0.086 3.914 18 O -0.320 6.320 19 C 0.406 3.594 20 F -0.208 7.208 21 F -0.206 7.206 22 C -0.043 4.043 23 Cl -0.055 7.055 24 C -0.102 4.102 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.272 0.728 29 H 0.418 0.582 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.237 0.763 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 -20.742 -0.929 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.200 5.200 3 C -0.458 4.458 4 H 0.087 0.913 5 C -0.202 4.202 6 N -0.540 5.540 7 Si 0.813 3.187 8 H -0.190 1.190 9 H -0.196 1.196 10 H -0.205 1.205 11 C 0.354 3.646 12 O -0.525 6.525 13 N -0.329 5.329 14 C 0.059 3.941 15 C -0.123 4.123 16 C -0.172 4.172 17 C 0.041 3.959 18 O -0.238 6.238 19 C 0.317 3.683 20 F -0.190 7.190 21 F -0.187 7.187 22 C -0.071 4.071 23 Cl -0.026 7.026 24 C -0.124 4.124 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.257 0.743 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.252 0.748 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.441 -20.528 -0.941 20.555 hybrid contribution -0.177 1.183 0.091 1.200 sum 0.264 -19.345 -0.849 19.366 Atomic orbital electron populations 1.21396 0.79453 1.00898 1.00449 1.42859 1.06229 1.02676 1.68257 1.19375 1.06601 0.86948 1.32841 0.91260 1.26138 0.97199 1.03060 0.93843 1.70003 1.21685 1.32263 1.30070 0.85060 0.77892 0.76976 0.78782 1.18966 1.19640 1.20535 1.16436 0.85376 0.81121 0.81687 1.90717 1.13557 1.86373 1.61810 1.42595 1.10293 1.02249 1.77772 1.17592 0.93170 0.86090 0.97254 1.21056 1.02429 0.91222 0.97579 1.21430 0.93402 1.00102 1.02281 1.18415 0.92678 0.85468 0.99314 1.86686 1.46492 1.19942 1.70638 1.24310 0.81794 0.90483 0.71721 1.93089 1.95521 1.91917 1.38505 1.93083 1.48659 1.92809 1.84187 1.19952 0.90478 0.93600 1.03106 1.98340 1.26678 1.97812 1.79754 1.21006 0.95580 0.95610 1.00225 0.93663 0.92231 0.91810 0.91877 0.74298 0.81554 0.81909 0.74766 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.07 8.38 127.77 1.07 6.14 16 2 N -0.48 -24.29 2.98 -675.92 -2.02 -26.30 16 3 C -0.33 -18.57 9.04 84.01 0.76 -17.81 16 4 H 0.07 4.14 7.61 -2.91 -0.02 4.12 16 5 C 0.00 -0.04 5.17 84.90 0.44 0.40 16 6 N -0.90 -47.68 11.09 21.65 0.24 -47.44 16 7 Si 0.99 42.65 29.56 68.60 2.03 44.67 16 8 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 C 0.65 31.98 8.07 179.06 1.45 33.43 16 12 O -0.64 -36.27 13.63 -4.03 -0.05 -36.32 16 13 N -0.68 -25.21 5.22 -317.08 -1.65 -26.86 16 14 C 0.16 5.37 6.30 38.11 0.24 5.61 16 15 C -0.10 -2.69 9.96 22.39 0.22 -2.47 16 16 C -0.15 -3.78 8.25 22.35 0.18 -3.59 16 17 C 0.09 2.38 6.48 22.52 0.15 2.52 16 18 O -0.32 -7.00 9.89 -93.56 -0.92 -7.92 16 19 C 0.41 5.41 5.98 113.37 0.68 6.09 16 20 F -0.21 -3.59 15.56 44.97 0.70 -2.89 16 21 F -0.21 -3.26 15.60 44.97 0.70 -2.56 16 22 C -0.04 -1.42 6.33 22.40 0.14 -1.27 16 23 Cl -0.05 -1.66 28.50 -2.72 -0.08 -1.74 16 24 C -0.10 -3.84 8.47 22.40 0.19 -3.65 16 25 H 0.04 1.94 7.76 -2.39 -0.02 1.93 16 26 H 0.06 2.66 7.20 -2.39 -0.02 2.65 16 27 H 0.06 2.04 6.60 -2.39 -0.02 2.03 16 28 H 0.27 13.56 8.31 -92.70 -0.77 12.79 16 29 H 0.42 12.46 6.64 -92.71 -0.62 11.85 16 30 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.16 3.27 5.09 -2.91 -0.01 3.25 16 32 H 0.24 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.13 5.77 6.25 -2.91 -0.02 5.75 16 Total: -1.00 -71.23 307.39 5.04 -66.19 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.59 Total: 15.77 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 5.52 Total: 25.40 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -3.43 Total: -100.61 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.98 Total: -44.24 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 1.40 Total: -5.44 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -71.23 5.04 -66.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192307459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.624 kcal (2) G-P(sol) polarization free energy of solvation -71.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds