Wall clock time and date at job start Tue Mar 31 2020 12:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 119.99827 * 2 1 4 4 H 1.07995 * 120.00105 * 202.36613 * 3 2 1 5 5 C 1.38817 * 119.99903 * 22.37293 * 3 2 1 6 6 N 1.31618 * 120.00220 * 11.32848 * 5 3 2 7 7 Si 1.86796 * 119.99846 * 191.33709 * 5 3 2 8 8 H 1.48498 * 109.47285 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47169 * 119.99458 * 7 5 3 10 10 H 1.48502 * 109.47183 * 239.99784 * 7 5 3 11 11 C 1.46503 * 120.00425 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47037 * 270.00519 * 11 2 1 13 13 C 1.39360 * 119.46388 * 269.97585 * 12 11 2 14 14 C 1.36141 * 120.86600 * 180.02562 * 13 12 11 15 15 C 1.40439 * 119.61274 * 359.95865 * 14 13 12 16 16 C 1.40746 * 121.36296 * 180.02562 * 15 14 13 17 17 C 1.36656 * 118.15078 * 180.02562 * 16 15 14 18 18 Br 1.89097 * 120.04692 * 180.02562 * 17 16 15 19 19 C 1.39433 * 119.90706 * 0.27716 * 17 16 15 20 20 N 1.31076 * 121.73323 * 359.43656 * 19 17 16 21 21 C 1.33685 * 121.33161 * 0.54965 * 20 19 17 22 22 C 1.36082 * 119.46645 * 89.99627 * 12 11 2 23 23 H 1.09000 * 109.47477 * 274.20088 * 1 2 3 24 24 H 1.08991 * 109.47369 * 34.21076 * 1 2 3 25 25 H 1.09005 * 109.46951 * 154.20724 * 1 2 3 26 26 H 0.97000 * 119.99851 * 179.97438 * 6 5 3 27 27 H 1.08993 * 109.47159 * 150.00493 * 11 2 1 28 28 H 1.09005 * 109.46586 * 30.00056 * 11 2 1 29 29 H 1.07996 * 119.56486 * 0.02562 * 13 12 11 30 30 H 1.07995 * 120.19484 * 180.02562 * 14 13 12 31 31 H 1.08003 * 120.93112 * 0.04548 * 16 15 14 32 32 H 1.07997 * 119.13078 * 179.69608 * 19 17 16 33 33 H 1.07994 * 120.12098 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2212 -0.3559 5 6 1.5339 2.3428 0.4576 6 7 0.3843 2.2689 1.0943 7 14 2.3367 4.0047 0.1695 8 1 3.6142 3.8169 -0.5638 9 1 1.4267 4.8618 -0.6322 10 1 2.6077 4.6567 1.4760 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 3.6139 -1.2944 2.0676 14 6 3.8697 -1.6705 3.3508 15 6 2.9476 -2.4803 4.0335 16 6 3.1747 -2.8903 5.3607 17 6 2.2339 -3.6783 5.9620 18 35 2.4842 -4.2593 7.7440 19 6 1.0917 -4.0575 5.2579 20 7 0.8818 -3.6689 4.0238 21 6 1.7624 -2.8973 3.3787 22 6 1.5342 -2.4885 2.0529 23 1 -0.3634 0.0753 1.0249 24 1 -0.3633 0.8498 -0.5777 25 1 -0.3633 -0.9253 -0.4472 26 1 -0.0457 3.0773 1.4143 27 1 3.1500 -1.1385 -0.5132 28 1 1.6085 -2.0286 -0.5130 29 1 4.3232 -0.6711 1.5434 30 1 4.7760 -1.3471 3.8411 31 1 4.0674 -2.5903 5.8894 32 1 0.3587 -4.6845 5.7436 33 1 0.6367 -2.7969 1.5375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235739215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:16 Heat of formation + Delta-G solvation = 79.061790 kcal Electronic energy + Delta-G solvation = -18255.024481 eV Core-core repulsion = 15327.577943 eV Total energy + Delta-G solvation = -2927.446538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 320.022 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.59670 -37.45724 -35.29697 -33.63678 -32.19956 -30.88099 -29.96295 -29.11910 -26.33684 -25.72743 -23.95894 -22.65886 -21.83309 -20.79177 -17.55083 -17.01083 -16.76690 -16.48390 -14.95964 -14.38414 -14.26162 -14.15139 -13.97296 -13.64556 -13.12167 -13.06480 -12.92445 -12.08037 -11.81077 -11.44869 -11.23605 -11.12940 -10.95996 -10.90664 -10.72901 -10.51044 -10.36344 -10.08251 -10.04853 -9.79784 -9.39083 -8.68501 -8.34272 -7.90880 -6.92447 -5.86668 -3.29211 0.53413 0.94405 1.49280 2.22813 3.11359 3.30368 3.37194 3.38963 4.29606 4.42050 4.46856 4.69389 4.83660 4.98548 5.12207 5.29401 5.46448 5.57842 5.59746 5.71446 5.84244 5.94293 6.10123 6.18230 6.42696 6.49361 6.64756 6.67255 6.71384 7.11181 7.19850 7.29757 7.63590 7.70620 8.01342 8.24433 9.08050 9.69795 10.18346 11.17069 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.003256 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.058745 B = 8597.861100 C = 8955.728645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.256 4.256 4 H 0.073 0.927 5 C 0.005 3.995 6 N -0.898 5.898 7 Si 0.906 3.094 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.174 3.826 12 C -0.051 4.051 13 C -0.077 4.077 14 C -0.108 4.108 15 C -0.108 4.108 16 C -0.020 4.020 17 C -0.164 4.164 18 Br -0.051 7.051 19 C 0.146 3.854 20 N -0.462 5.462 21 C 0.141 3.859 22 C -0.103 4.103 23 H 0.030 0.970 24 H 0.049 0.951 25 H 0.001 0.999 26 H 0.255 0.745 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 -13.368 10.145 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.385 4.385 4 H 0.091 0.909 5 C -0.195 4.195 6 N -0.541 5.541 7 Si 0.736 3.264 8 H -0.201 1.201 9 H -0.214 1.214 10 H -0.216 1.216 11 C 0.047 3.953 12 C -0.058 4.058 13 C -0.095 4.095 14 C -0.127 4.127 15 C -0.112 4.112 16 C -0.047 4.047 17 C -0.246 4.246 18 Br 0.033 6.967 19 C -0.029 4.029 20 N -0.170 5.170 21 C 0.020 3.980 22 C -0.124 4.124 23 H 0.048 0.952 24 H 0.068 0.932 25 H 0.019 0.981 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.796 -13.580 10.233 17.667 hybrid contribution 0.969 1.518 0.411 1.848 sum 5.765 -12.062 10.644 17.089 Atomic orbital electron populations 1.20885 0.81931 0.96009 0.99606 1.44262 1.02201 1.00276 1.83751 1.19329 0.98527 0.84923 1.35771 0.90908 1.25125 0.97600 0.98838 0.97924 1.70087 1.17525 1.27376 1.39154 0.86156 0.78782 0.83927 0.77533 1.20104 1.21414 1.21602 1.20149 0.97105 0.88936 0.89103 1.21087 0.92055 0.91005 1.01632 1.20930 0.97102 0.97149 0.94342 1.20868 0.98661 0.98173 0.95026 1.18690 0.97043 1.01331 0.94128 1.21394 0.97462 0.92485 0.93393 1.22466 1.01138 1.07530 0.93448 1.96668 1.97241 1.89253 1.13536 1.22804 0.93886 0.96077 0.90145 1.68126 1.29389 1.11143 1.08353 1.18953 0.89915 0.94396 0.94722 1.20519 1.00232 0.99559 0.92044 0.95153 0.93212 0.98058 0.93498 0.92287 0.92806 0.85409 0.85641 0.84052 0.82322 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 9.01 59.85 0.54 4.39 16 2 N -0.59 -14.02 2.91 -182.50 -0.53 -14.56 16 3 C -0.26 -6.65 9.67 -15.06 -0.15 -6.80 16 4 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.90 -25.59 10.59 55.49 0.59 -25.00 16 7 Si 0.91 21.09 29.57 -169.99 -5.03 16.06 16 8 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.17 3.36 5.80 -5.19 -0.03 3.33 16 12 C -0.05 -0.96 5.43 -104.98 -0.57 -1.53 16 13 C -0.08 -1.33 9.59 -39.92 -0.38 -1.71 16 14 C -0.11 -1.69 9.78 -39.51 -0.39 -2.07 16 15 C -0.11 -1.77 5.74 -106.81 -0.61 -2.39 16 16 C -0.02 -0.27 9.62 -39.21 -0.38 -0.65 16 17 C -0.16 -2.19 6.21 -39.71 -0.25 -2.44 16 18 Br -0.05 -0.56 33.70 -68.01 -2.29 -2.85 16 19 C 0.15 2.09 10.90 -17.43 -0.19 1.90 16 20 N -0.46 -7.97 10.34 -10.95 -0.11 -8.09 16 21 C 0.14 2.55 6.60 -84.86 -0.56 1.99 16 22 C -0.10 -1.92 9.58 -39.47 -0.38 -2.30 16 23 H 0.03 0.80 7.42 -51.93 -0.39 0.42 16 24 H 0.05 1.28 7.19 -51.93 -0.37 0.91 16 25 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 27 H 0.06 1.06 7.97 -51.93 -0.41 0.65 16 28 H 0.05 0.94 7.79 -51.93 -0.40 0.53 16 29 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -29.29 306.13 -9.84 -39.13 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.64 Total: -1.07 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -3.43 Total: -8.24 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.06 Total: -47.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.29 -9.84 -39.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235739215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.189 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds