Wall clock time and date at job start Tue Mar 31 2020 12:06:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31546 * 1
3 3 Si 1.86797 * 120.00252 * 2 1
4 4 H 1.48506 * 109.47090 * 270.00617 * 3 2 1
5 5 H 1.48506 * 109.46733 * 30.00152 * 3 2 1
6 6 H 1.48500 * 109.47262 * 150.00066 * 3 2 1
7 7 C 1.38672 * 120.00015 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99947 * 179.97438 * 7 2 1
9 9 O 1.34815 * 119.99771 * 0.02562 * 7 2 1
10 10 C 1.35691 * 116.99604 * 185.05375 * 9 7 2
11 11 C 1.39410 * 120.39560 * 354.51691 * 10 9 7
12 12 C 1.38242 * 118.45356 * 179.97438 * 11 10 9
13 13 C 1.39412 * 119.14351 * 0.24974 * 12 11 10
14 14 C 1.48307 * 119.64313 * 179.74575 * 13 12 11
15 15 C 1.39849 * 120.90172 * 180.02562 * 14 13 12
16 16 C 1.37934 * 119.03936 * 179.97438 * 15 14 13
17 17 N 1.31944 * 120.90023 * 0.02562 * 16 15 14
18 18 C 1.31977 * 122.00480 * 359.97438 * 17 16 15
19 19 Br 1.89099 * 119.56997 * 180.02562 * 18 17 16
20 20 C 1.38137 * 120.85552 * 359.74118 * 18 17 16
21 21 N 1.32679 * 120.70721 * 359.45988 * 13 12 11
22 22 C 1.31623 * 121.69111 * 0.57712 * 21 13 12
23 23 H 0.97001 * 119.99938 * 359.97438 * 1 2 3
24 24 H 1.08006 * 120.76869 * 359.95600 * 11 10 9
25 25 H 1.07997 * 120.42654 * 179.97438 * 12 11 10
26 26 H 1.07999 * 120.47655 * 359.95960 * 15 14 13
27 27 H 1.08001 * 119.54848 * 180.02562 * 16 15 14
28 28 H 1.08002 * 120.49590 * 180.26677 * 20 18 17
29 29 H 1.07999 * 119.60836 * 179.70945 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 2.4969 2.0464 -1.4001
5 1 1.4469 2.6526 0.7001
6 1 3.5471 1.4401 0.7000
7 6 2.0088 -1.2009 -0.0005
8 1 3.0888 -1.2009 -0.0010
9 8 1.3347 -2.3684 -0.0016
10 6 2.0697 -3.5041 0.1044
11 6 3.4625 -3.4465 0.0938
12 6 4.1715 -4.6281 0.2049
13 6 3.4743 -5.8301 0.3177
14 6 4.2238 -7.1048 0.4318
15 6 3.5512 -8.3256 0.5457
16 6 4.2866 -9.4881 0.6490
17 7 5.6056 -9.4583 0.6419
18 6 6.2792 -8.3283 0.5362
19 35 8.1699 -8.3657 0.5325
20 6 5.6211 -7.1191 0.4225
21 7 2.1477 -5.8454 0.3298
22 6 1.4425 -4.7389 0.2255
23 1 -0.4850 0.8401 0.0004
24 1 3.9757 -2.5007 0.0006
25 1 5.2514 -4.6205 0.1998
26 1 2.4717 -8.3578 0.5530
27 1 3.7756 -10.4355 0.7370
28 1 6.1781 -6.1983 0.3320
29 1 0.3638 -4.7908 0.2345
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001241708506.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:20
Heat of formation + Delta-G solvation = 43.480530 kcal
Electronic energy + Delta-G solvation = -17285.591451 eV
Core-core repulsion = 14220.768900 eV
Total energy + Delta-G solvation = -3064.822552 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 319.990 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.36512 -39.46740 -37.43580 -33.36534 -32.58133 -32.51569 -31.50985 -29.63574
-28.95141 -25.93712 -24.04507 -23.62819 -22.28319 -21.26457 -18.41465 -17.75651
-16.84527 -16.40177 -15.76876 -15.26783 -14.76338 -14.54902 -14.49329 -14.12978
-13.83237 -13.59030 -13.08702 -12.65760 -12.60004 -11.99845 -11.68055 -11.55313
-11.27910 -11.03437 -10.69884 -10.54439 -10.05286 -9.99403 -9.64266 -9.28216
-9.04723 -9.00060 -8.96532 -7.51839 -6.81348 -4.36184 0.76372 0.94635
1.30593 1.85996 2.18349 2.94462 2.95644 3.00797 3.66669 3.68842
4.28840 4.43189 4.56934 4.77967 4.88382 4.95370 5.03118 5.11397
5.34662 5.57241 5.58957 5.66014 5.73666 5.98605 6.26584 6.36537
6.50868 6.65884 6.78662 6.98764 7.21959 7.60761 7.70489 8.49712
8.62186 9.23709 10.33914
Molecular weight = 319.99amu
Principal moments of inertia in cm(-1)
A = 0.024438 B = 0.002876 C = 0.002576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1145.485526 B = 9734.200974 C =10865.809949
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.843 5.843
2 C 0.044 3.956
3 Si 0.947 3.053
4 H -0.269 1.269
5 H -0.274 1.274
6 H -0.264 1.264
7 C -0.393 4.393
8 H 0.098 0.902
9 O -0.150 6.150
10 C 0.112 3.888
11 C -0.206 4.206
12 C -0.086 4.086
13 C 0.017 3.983
14 C 0.054 3.946
15 C -0.143 4.143
16 C 0.106 3.894
17 N -0.478 5.478
18 C 0.126 3.874
19 Br -0.020 7.020
20 C -0.145 4.145
21 N -0.423 5.423
22 C 0.038 3.962
23 H 0.277 0.723
24 H 0.141 0.859
25 H 0.123 0.877
26 H 0.150 0.850
27 H 0.163 0.837
28 H 0.144 0.856
29 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.785 -12.019 0.851 16.854
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.475 5.475
2 C -0.164 4.164
3 Si 0.771 3.229
4 H -0.195 1.195
5 H -0.199 1.199
6 H -0.188 1.188
7 C -0.469 4.469
8 H 0.115 0.885
9 O -0.048 6.048
10 C 0.053 3.947
11 C -0.231 4.231
12 C -0.106 4.106
13 C -0.116 4.116
14 C 0.045 3.955
15 C -0.164 4.164
16 C -0.052 4.052
17 N -0.190 5.190
18 C -0.090 4.090
19 Br 0.064 6.936
20 C -0.169 4.169
21 N -0.133 5.133
22 C -0.128 4.128
23 H 0.087 0.913
24 H 0.158 0.842
25 H 0.141 0.859
26 H 0.168 0.832
27 H 0.180 0.820
28 H 0.161 0.839
29 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 12.088 -13.349 0.979 18.035
hybrid contribution 0.040 2.460 -0.171 2.466
sum 12.128 -10.889 0.808 16.319
Atomic orbital electron populations
1.70021 1.06179 1.28677 1.42592 1.25444 0.95976 0.99297 0.95680
0.85606 0.79024 0.79196 0.79101 1.19462 1.19851 1.18849 1.21499
0.92162 0.80419 1.52816 0.88478 1.83942 1.34614 1.11607 1.74672
1.20573 0.91040 0.89320 0.93800 1.21456 0.93832 0.99042 1.08819
1.21689 0.99929 0.92070 0.96948 1.18731 0.89548 0.90715 1.12603
1.18829 0.91382 0.92692 0.92616 1.22382 1.02670 0.91892 0.99466
1.22674 0.88342 0.98599 0.95544 1.67316 1.09839 1.28541 1.13312
1.22435 0.92305 0.91094 1.03168 1.96733 1.00256 1.99081 1.97545
1.21940 0.94169 0.98067 1.02704 1.67228 1.06903 1.30066 1.09087
1.21762 0.99758 0.85137 1.06168 0.91272 0.84171 0.85906 0.83178
0.82011 0.83852 0.82627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -22.51 13.67 55.48 0.76 -21.75 15
2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 15
3 Si 0.95 18.54 29.55 -169.99 -5.02 13.51 15
4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15
5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15
6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15
7 C -0.39 -9.88 9.50 30.89 0.29 -9.59 15
8 H 0.10 2.22 5.25 -52.49 -0.28 1.95 15
9 O -0.15 -3.84 9.76 0.27 0.00 -3.84 15
10 C 0.11 2.45 6.67 -38.86 -0.26 2.19 15
11 C -0.21 -4.02 9.25 -39.14 -0.36 -4.38 15
12 C -0.09 -1.47 9.47 -39.14 -0.37 -1.84 15
13 C 0.02 0.30 6.74 -82.92 -0.56 -0.26 15
14 C 0.05 0.83 5.91 -104.59 -0.62 0.21 15
15 C -0.14 -1.96 9.65 -39.09 -0.38 -2.34 15
16 C 0.11 1.31 11.17 -17.61 -0.20 1.12 15
17 N -0.48 -6.77 10.31 -11.73 -0.12 -6.89 15
18 C 0.13 1.74 7.16 -17.53 -0.13 1.62 15
19 Br -0.02 -0.24 33.86 -68.01 -2.30 -2.54 15
20 C -0.15 -2.02 9.21 -39.06 -0.36 -2.38 15
21 N -0.42 -7.96 9.52 -9.60 -0.09 -8.05 15
22 C 0.04 0.75 11.14 -17.35 -0.19 0.56 15
23 H 0.28 6.75 8.31 -40.82 -0.34 6.41 15
24 H 0.14 2.63 5.75 -52.48 -0.30 2.33 15
25 H 0.12 1.70 6.27 -52.49 -0.33 1.37 15
26 H 0.15 1.95 7.63 -52.49 -0.40 1.55 15
27 H 0.16 1.45 8.06 -52.49 -0.42 1.03 15
28 H 0.14 1.74 6.31 -52.49 -0.33 1.41 15
29 H 0.16 2.86 8.06 -52.49 -0.42 2.43 15
LS Contribution 285.00 15.07 4.29 4.29
Total: -1.00 -27.74 285.00 -7.33 -35.07
By element:
Atomic # 1 Polarization: 5.91 SS G_CDS: -1.62 Total: 4.29 kcal
Atomic # 6 Polarization: -10.87 SS G_CDS: -3.22 Total: -14.10 kcal
Atomic # 7 Polarization: -37.23 SS G_CDS: 0.55 Total: -36.69 kcal
Atomic # 8 Polarization: -3.84 SS G_CDS: 0.00 Total: -3.84 kcal
Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.51 kcal
Atomic # 35 Polarization: -0.24 SS G_CDS: -2.30 Total: -2.54 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -27.74 -7.33 -35.07 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241708506.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.549 kcal
(2) G-P(sol) polarization free energy of solvation -27.743 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.806 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.068 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.481 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds