Wall clock time and date at job start Tue Mar 31 2020 12:06:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31546 * 1
3 3 Si 1.86797 * 120.00252 * 2 1
4 4 H 1.48506 * 109.47090 * 270.00617 * 3 2 1
5 5 H 1.48506 * 109.46733 * 30.00152 * 3 2 1
6 6 H 1.48500 * 109.47262 * 150.00066 * 3 2 1
7 7 C 1.38672 * 120.00015 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99947 * 179.97438 * 7 2 1
9 9 O 1.34815 * 119.99771 * 0.02562 * 7 2 1
10 10 C 1.35691 * 116.99604 * 185.05375 * 9 7 2
11 11 C 1.39410 * 120.39560 * 354.51691 * 10 9 7
12 12 C 1.38242 * 118.45356 * 179.97438 * 11 10 9
13 13 C 1.39412 * 119.14351 * 0.24974 * 12 11 10
14 14 C 1.48307 * 119.64313 * 179.74575 * 13 12 11
15 15 C 1.39849 * 120.90172 * 180.02562 * 14 13 12
16 16 C 1.37934 * 119.03936 * 179.97438 * 15 14 13
17 17 N 1.31944 * 120.90023 * 0.02562 * 16 15 14
18 18 C 1.31977 * 122.00480 * 359.97438 * 17 16 15
19 19 Br 1.89099 * 119.56997 * 180.02562 * 18 17 16
20 20 C 1.38137 * 120.85552 * 359.74118 * 18 17 16
21 21 N 1.32679 * 120.70721 * 359.45988 * 13 12 11
22 22 C 1.31623 * 121.69111 * 0.57712 * 21 13 12
23 23 H 0.97001 * 119.99938 * 359.97438 * 1 2 3
24 24 H 1.08006 * 120.76869 * 359.95600 * 11 10 9
25 25 H 1.07997 * 120.42654 * 179.97438 * 12 11 10
26 26 H 1.07999 * 120.47655 * 359.95960 * 15 14 13
27 27 H 1.08001 * 119.54848 * 180.02562 * 16 15 14
28 28 H 1.08002 * 120.49590 * 180.26677 * 20 18 17
29 29 H 1.07999 * 119.60836 * 179.70945 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 2.4969 2.0464 -1.4001
5 1 1.4469 2.6526 0.7001
6 1 3.5471 1.4401 0.7000
7 6 2.0088 -1.2009 -0.0005
8 1 3.0888 -1.2009 -0.0010
9 8 1.3347 -2.3684 -0.0016
10 6 2.0697 -3.5041 0.1044
11 6 3.4625 -3.4465 0.0938
12 6 4.1715 -4.6281 0.2049
13 6 3.4743 -5.8301 0.3177
14 6 4.2238 -7.1048 0.4318
15 6 3.5512 -8.3256 0.5457
16 6 4.2866 -9.4881 0.6490
17 7 5.6056 -9.4583 0.6419
18 6 6.2792 -8.3283 0.5362
19 35 8.1699 -8.3657 0.5325
20 6 5.6211 -7.1191 0.4225
21 7 2.1477 -5.8454 0.3298
22 6 1.4425 -4.7389 0.2255
23 1 -0.4850 0.8401 0.0004
24 1 3.9757 -2.5007 0.0006
25 1 5.2514 -4.6205 0.1998
26 1 2.4717 -8.3578 0.5530
27 1 3.7756 -10.4355 0.7370
28 1 6.1781 -6.1983 0.3320
29 1 0.3638 -4.7908 0.2345
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001241708506.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:19
Heat of formation + Delta-G solvation = 27.011823 kcal
Electronic energy + Delta-G solvation = -17286.305588 eV
Core-core repulsion = 14220.768900 eV
Total energy + Delta-G solvation = -3065.536688 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 319.990 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.69368 -40.85014 -39.03704 -34.76430 -34.18670 -33.62075 -32.96815 -30.68203
-30.43267 -27.64589 -25.30696 -25.05006 -23.60320 -22.66328 -20.08764 -19.25196
-18.22947 -17.72720 -16.91281 -16.67578 -16.33832 -16.00499 -15.85148 -15.40864
-15.23780 -14.76019 -14.52122 -14.20527 -14.17123 -13.64116 -13.06040 -12.78608
-12.74632 -12.15901 -12.05402 -11.76198 -11.50883 -11.30022 -10.90064 -10.75147
-10.59625 -10.51624 -10.00169 -9.10161 -8.57531 -6.24299 -0.49628 -0.11544
0.28580 0.30664 0.76984 1.36656 1.45354 1.53721 2.11139 2.49908
2.85552 2.95534 3.12242 3.32735 3.52723 3.67733 3.82997 3.96241
4.01078 4.18371 4.29541 4.35801 4.58031 4.63617 4.86609 4.93395
5.18333 5.21936 5.38270 5.47544 5.67496 5.86608 6.64733 6.84851
6.94792 7.55217 8.63026
Molecular weight = 319.99amu
Principal moments of inertia in cm(-1)
A = 0.024438 B = 0.002876 C = 0.002576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1145.485526 B = 9734.200974 C =10865.809949
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.906 5.906
2 C -0.014 4.014
3 Si 1.019 2.981
4 H -0.263 1.263
5 H -0.272 1.272
6 H -0.250 1.250
7 C -0.418 4.418
8 H 0.111 0.889
9 O -0.202 6.202
10 C 0.087 3.913
11 C -0.201 4.201
12 C -0.086 4.086
13 C 0.040 3.960
14 C 0.027 3.973
15 C -0.139 4.139
16 C 0.113 3.887
17 N -0.487 5.487
18 C 0.113 3.887
19 Br -0.001 7.001
20 C -0.136 4.136
21 N -0.429 5.429
22 C 0.030 3.970
23 H 0.277 0.723
24 H 0.147 0.853
25 H 0.164 0.836
26 H 0.155 0.845
27 H 0.199 0.801
28 H 0.162 0.838
29 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.683 -13.952 1.066 20.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.214 4.214
3 Si 0.838 3.162
4 H -0.187 1.187
5 H -0.197 1.197
6 H -0.173 1.173
7 C -0.494 4.494
8 H 0.128 0.872
9 O -0.105 6.105
10 C 0.031 3.969
11 C -0.226 4.226
12 C -0.106 4.106
13 C -0.095 4.095
14 C 0.017 3.983
15 C -0.159 4.159
16 C -0.045 4.045
17 N -0.198 5.198
18 C -0.103 4.103
19 Br 0.083 6.917
20 C -0.159 4.159
21 N -0.138 5.138
22 C -0.133 4.133
23 H 0.086 0.914
24 H 0.164 0.836
25 H 0.181 0.819
26 H 0.173 0.827
27 H 0.215 0.785
28 H 0.179 0.821
29 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 15.006 -15.333 1.196 21.487
hybrid contribution -0.583 2.464 -0.199 2.540
sum 14.422 -12.869 0.996 19.355
Atomic orbital electron populations
1.70154 1.08081 1.29422 1.46487 1.26635 0.96829 1.02832 0.95144
0.84568 0.77968 0.74285 0.79366 1.18749 1.19724 1.17314 1.21938
0.92906 0.80858 1.53659 0.87219 1.83942 1.35741 1.12430 1.78392
1.20996 0.92312 0.89174 0.94396 1.21694 0.93060 1.00409 1.07479
1.22065 1.01924 0.90739 0.95852 1.19335 0.89351 0.92239 1.08585
1.18830 0.92101 0.92094 0.95258 1.22556 1.03117 0.91861 0.98400
1.23215 0.87811 0.99583 0.93855 1.67425 1.10640 1.28810 1.12938
1.22710 0.93455 0.91037 1.03064 1.96760 0.98428 1.99060 1.97457
1.22094 0.93542 0.98974 1.01325 1.67328 1.07663 1.29293 1.09556
1.21928 1.00395 0.85013 1.05975 0.91352 0.83580 0.81900 0.82688
0.78461 0.82099 0.82120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.32 13.67 21.62 0.30 -51.02 15
2 C -0.01 -0.74 5.49 84.84 0.47 -0.27 15
3 Si 1.02 38.87 29.55 68.60 2.03 40.90 15
4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15
5 H -0.27 -10.14 7.11 99.48 0.71 -9.44 15
6 H -0.25 -8.75 7.11 99.48 0.71 -8.04 15
7 C -0.42 -21.89 9.50 67.92 0.64 -21.25 15
8 H 0.11 5.13 5.25 -2.91 -0.02 5.11 15
9 O -0.20 -10.96 9.76 -21.93 -0.21 -11.18 15
10 C 0.09 3.89 6.67 22.74 0.15 4.05 15
11 C -0.20 -7.68 9.25 22.55 0.21 -7.47 15
12 C -0.09 -2.72 9.47 22.55 0.21 -2.51 15
13 C 0.04 1.31 6.74 41.98 0.28 1.59 15
14 C 0.03 0.73 5.91 -19.85 -0.12 0.61 15
15 C -0.14 -3.34 9.65 22.59 0.22 -3.12 15
16 C 0.11 2.36 11.17 84.60 0.94 3.31 15
17 N -0.49 -11.99 10.31 -191.03 -1.97 -13.96 15
18 C 0.11 2.73 7.16 84.65 0.61 3.33 15
19 Br 0.00 -0.02 33.86 -20.37 -0.69 -0.71 15
20 C -0.14 -3.27 9.21 22.61 0.21 -3.06 15
21 N -0.43 -15.64 9.52 -184.30 -1.75 -17.40 15
22 C 0.03 1.20 11.14 84.91 0.95 2.15 15
23 H 0.28 14.39 8.31 -92.71 -0.77 13.61 15
24 H 0.15 5.38 5.75 -2.91 -0.02 5.36 15
25 H 0.16 3.80 6.27 -2.91 -0.02 3.78 15
26 H 0.16 3.59 7.63 -2.91 -0.02 3.57 15
27 H 0.20 2.62 8.06 -2.91 -0.02 2.60 15
28 H 0.16 3.19 6.31 -2.91 -0.02 3.17 15
29 H 0.16 6.16 8.06 -2.91 -0.02 6.14 15
Total: -1.00 -62.68 285.00 3.68 -59.00
By element:
Atomic # 1 Polarization: 15.79 SS G_CDS: 1.21 Total: 17.00 kcal
Atomic # 6 Polarization: -27.40 SS G_CDS: 4.77 Total: -22.63 kcal
Atomic # 7 Polarization: -78.95 SS G_CDS: -3.43 Total: -82.38 kcal
Atomic # 8 Polarization: -10.96 SS G_CDS: -0.21 Total: -11.18 kcal
Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal
Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal
Total: -62.68 3.68 -59.00 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241708506.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.007 kcal
(2) G-P(sol) polarization free energy of solvation -62.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.329 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.996 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds