Wall clock time and date at job start Tue Mar 31 2020 13:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76206 * 99.99926 * 2 1 4 4 N 1.32423 * 119.82003 * 0.24991 * 3 2 1 5 5 C 1.31893 * 121.78048 * 180.29006 * 4 3 2 6 6 C 1.38506 * 121.21439 * 359.72118 * 5 4 3 7 7 Cl 1.73602 * 120.24852 * 180.02562 * 6 5 4 8 8 C 1.38452 * 119.49799 * 0.02562 * 6 5 4 9 9 C 1.39967 * 118.36287 * 0.02562 * 8 6 5 10 10 C 1.47509 * 120.60556 * 179.97438 * 9 8 6 11 11 N 1.32716 * 120.00448 * 129.15793 * 10 9 8 12 12 C 1.31699 * 121.70086 * 180.28459 * 11 10 9 13 13 C 1.50698 * 119.23668 * 179.70871 * 12 11 10 14 14 C 1.38905 * 121.52193 * 359.43282 * 12 11 10 15 15 C 1.36858 * 119.83373 * 0.27343 * 14 12 11 16 16 C 1.41132 * 118.40286 * 0.02562 * 15 14 12 17 17 C 1.40803 * 120.72382 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99970 * 154.21258 * 17 16 15 19 19 C 1.40028 * 120.00115 * 334.21906 * 17 16 15 20 20 N 1.30800 * 119.99910 * 343.97947 * 19 17 16 21 21 Si 1.86797 * 120.00162 * 163.98557 * 19 17 16 22 22 H 1.48501 * 109.47013 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47190 * 119.99685 * 21 19 17 24 24 H 1.48502 * 109.47064 * 239.99798 * 21 19 17 25 25 H 1.09004 * 109.46632 * 299.99979 * 1 2 3 26 26 H 1.08997 * 109.47154 * 59.99396 * 1 2 3 27 27 H 1.08998 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.38844 * 179.70438 * 5 4 3 29 29 H 1.08004 * 120.82004 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.46965 * 269.72670 * 13 12 11 31 31 H 1.09002 * 109.47287 * 149.73192 * 13 12 11 32 32 H 1.09003 * 109.47091 * 29.73141 * 13 12 11 33 33 H 1.08000 * 120.08392 * 180.29923 * 14 12 11 34 34 H 1.07993 * 120.79723 * 180.02562 * 15 14 12 35 35 H 0.97003 * 120.00196 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0989 2.5833 0.0050 5 6 1.2833 3.8893 -0.0005 6 6 2.5566 4.4344 -0.0060 7 17 2.7703 6.1572 -0.0125 8 6 3.6576 3.5949 -0.0063 9 6 3.4395 2.2123 -0.0016 10 6 4.5766 1.2727 -0.0022 11 7 4.6287 0.2931 0.8917 12 6 5.6306 -0.5610 0.9249 13 6 5.6366 -1.6483 1.9683 14 6 6.6791 -0.4861 0.0169 15 6 6.6860 0.4965 -0.9357 16 6 5.6129 1.4128 -0.9628 17 6 5.5702 2.4425 -1.9222 18 1 4.6214 2.8625 -2.2217 19 6 6.7580 2.9219 -2.4881 20 7 7.9065 2.6546 -1.9221 21 14 6.7022 3.9431 -4.0511 22 1 5.2920 4.1017 -4.4887 23 1 7.2933 5.2802 -3.7902 24 1 7.4769 3.2589 -5.1174 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.4257 4.5456 -0.0009 29 1 4.6600 3.9969 -0.0102 30 1 6.1496 -1.2920 2.8615 31 1 6.1541 -2.5243 1.5772 32 1 4.6103 -1.9153 2.2207 33 1 7.4867 -1.2017 0.0623 34 1 7.4931 0.5689 -1.6496 35 1 8.7293 2.9870 -2.3138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243622393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:24 Heat of formation + Delta-G solvation = 28.693541 kcal Electronic energy + Delta-G solvation = -21822.088576 eV Core-core repulsion = 18549.638464 eV Total energy + Delta-G solvation = -3272.450112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.045 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22867 -40.02217 -37.58963 -36.21690 -34.58324 -32.81750 -32.72898 -31.14884 -29.65087 -29.53999 -26.45891 -24.87073 -24.78171 -22.68684 -22.13409 -19.36602 -18.93649 -17.83555 -17.61202 -17.30982 -16.42014 -16.10293 -15.72915 -15.46583 -15.29747 -14.77287 -14.52958 -14.31956 -14.25818 -13.95265 -13.59881 -13.50306 -13.23844 -13.10064 -13.06678 -12.96077 -12.73905 -12.61586 -12.25995 -12.15541 -11.77795 -11.34034 -11.20245 -10.82954 -10.78848 -10.53853 -10.06303 -9.88536 -9.34731 -8.78354 -8.31240 -6.43842 -0.26904 0.05566 0.60629 0.78601 1.00705 1.16132 1.34802 1.42233 1.47795 1.53186 2.12507 2.53043 2.67339 3.44425 3.58396 3.72815 3.80669 4.02827 4.27453 4.40107 4.41208 4.42371 4.58239 4.67375 4.87750 4.91515 4.96744 5.01716 5.04182 5.07101 5.18522 5.28339 5.34728 5.39863 5.79556 5.92498 6.04603 6.44945 6.58493 6.68657 6.76592 7.72559 8.15704 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.008446 B = 0.007649 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.517611 B = 3659.869107 C = 5942.437694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.052 6.052 3 C 0.105 3.895 4 N -0.481 5.481 5 C 0.116 3.884 6 C -0.095 4.095 7 Cl -0.048 7.048 8 C -0.042 4.042 9 C -0.015 4.015 10 C -0.008 4.008 11 N -0.442 5.442 12 C -0.012 4.012 13 C -0.069 4.069 14 C -0.140 4.140 15 C -0.147 4.147 16 C 0.064 3.936 17 C -0.457 4.457 18 H 0.075 0.925 19 C 0.046 3.954 20 N -0.806 5.806 21 Si 0.968 3.032 22 H -0.261 1.261 23 H -0.261 1.261 24 H -0.260 1.260 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.198 0.802 29 H 0.135 0.865 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 0.533 1.199 7.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.188 5.812 3 C -0.143 4.143 4 N -0.193 5.193 5 C -0.046 4.046 6 C -0.127 4.127 7 Cl -0.019 7.019 8 C -0.070 4.070 9 C -0.024 4.024 10 C -0.146 4.146 11 N -0.150 5.150 12 C -0.155 4.155 13 C -0.126 4.126 14 C -0.160 4.160 15 C -0.173 4.173 16 C 0.060 3.940 17 C -0.486 4.486 18 H 0.093 0.907 19 C -0.172 4.172 20 N -0.430 5.430 21 Si 0.788 3.212 22 H -0.185 1.185 23 H -0.186 1.186 24 H -0.184 1.184 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.214 0.786 29 H 0.153 0.847 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.426 -0.780 1.796 8.650 hybrid contribution 1.304 2.242 -1.317 2.909 sum -7.122 1.462 0.480 7.286 Atomic orbital electron populations 1.23536 0.93986 1.07010 1.06318 1.86389 1.07366 0.96978 1.90473 1.23517 0.90873 0.99768 1.00093 1.68076 1.32024 1.03439 1.15785 1.23083 0.95448 0.90928 0.95179 1.21811 0.95504 0.86254 1.09133 1.98342 1.97636 1.08964 1.96999 1.21557 0.99225 0.91638 0.94606 1.18958 0.91616 0.92458 0.99344 1.19273 0.98186 0.99030 0.98084 1.66923 1.24501 1.02056 1.21538 1.21030 0.92856 1.00163 1.01428 1.20338 1.02173 0.94588 0.95522 1.21597 0.98984 0.98999 0.96465 1.21433 1.00395 0.94985 1.00525 1.18569 0.91370 0.92660 0.91435 1.19594 0.94167 1.15988 1.18819 0.90656 1.26648 0.94022 0.96520 1.00044 1.69791 0.99972 1.36400 1.36873 0.85344 0.79907 0.78379 0.77546 1.18460 1.18576 1.18437 0.89554 0.89845 0.86116 0.78581 0.84678 0.91975 0.90352 0.92027 0.85429 0.86465 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.65 113.37 1.09 -2.53 16 2 S -0.05 -1.91 20.71 -56.49 -1.17 -3.08 16 3 C 0.11 4.25 7.01 85.20 0.60 4.85 16 4 N -0.48 -16.89 9.13 -190.72 -1.74 -18.63 16 5 C 0.12 3.57 10.96 84.75 0.93 4.50 16 6 C -0.09 -3.21 6.33 22.38 0.14 -3.07 16 7 Cl -0.05 -1.37 28.98 -2.72 -0.08 -1.45 16 8 C -0.04 -1.71 7.95 22.74 0.18 -1.53 16 9 C -0.01 -0.66 5.04 -19.82 -0.10 -0.76 16 10 C -0.01 -0.41 5.79 42.39 0.25 -0.16 16 11 N -0.44 -20.89 8.83 -171.24 -1.51 -22.40 16 12 C -0.01 -0.50 6.79 42.74 0.29 -0.21 16 13 C -0.07 -2.27 10.15 71.24 0.72 -1.55 16 14 C -0.14 -6.18 9.64 22.11 0.21 -5.96 16 15 C -0.15 -7.30 8.74 22.66 0.20 -7.10 16 16 C 0.06 3.30 5.57 -21.01 -0.12 3.19 16 17 C -0.46 -22.87 7.27 23.33 0.17 -22.70 16 18 H 0.08 3.79 6.65 -2.91 -0.02 3.77 16 19 C 0.05 2.13 5.19 85.28 0.44 2.57 16 20 N -0.81 -38.56 10.97 21.84 0.24 -38.32 16 21 Si 0.97 35.96 29.59 68.60 2.03 37.99 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 23 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 24 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 25 H 0.09 2.19 8.12 -2.39 -0.02 2.17 16 26 H 0.08 2.13 8.13 -2.40 -0.02 2.11 16 27 H 0.12 2.43 8.14 -2.40 -0.02 2.42 16 28 H 0.20 4.41 8.06 -2.91 -0.02 4.39 16 29 H 0.14 5.93 7.46 -2.91 -0.02 5.90 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.12 5.92 6.29 -2.91 -0.02 5.90 16 35 H 0.29 12.65 8.30 -92.71 -0.77 11.88 16 Total: -1.00 -57.21 329.16 3.91 -53.30 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.13 Total: 23.05 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 5.01 Total: -30.46 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.01 Total: -79.35 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -1.17 Total: -3.08 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -57.21 3.91 -53.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243622393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.998 kcal (2) G-P(sol) polarization free energy of solvation -57.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds