Wall clock time and date at job start Tue Mar 31 2020 12:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48501 * 109.47225 * 269.99818 * 3 2 1 5 5 H 1.48499 * 109.47157 * 29.99986 * 3 2 1 6 6 H 1.48500 * 109.47078 * 149.99771 * 3 2 1 7 7 C 1.39987 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00067 * 197.96119 * 7 2 1 9 9 C 1.41008 * 120.00331 * 17.96056 * 7 2 1 10 10 C 1.40947 * 120.11210 * 24.68888 * 9 7 2 11 11 C 1.36232 * 119.87892 * 180.02562 * 10 9 7 12 12 C 1.39966 * 120.12024 * 359.97438 * 11 10 9 13 13 C 1.47944 * 119.88294 * 179.97438 * 12 11 10 14 14 C 1.39260 * 120.06633 * 129.72343 * 13 12 11 15 15 C 1.39409 * 119.73368 * 179.73069 * 14 13 12 16 16 C 1.47548 * 120.06058 * 180.27510 * 15 14 13 17 17 O 1.21495 * 119.99893 * 180.29216 * 16 15 14 18 18 O 1.34730 * 120.00338 * 0.29166 * 16 15 14 19 19 C 1.40012 * 119.87440 * 0.56561 * 15 14 13 20 20 Cl 1.73601 * 119.92787 * 179.72959 * 19 15 14 21 21 C 1.38098 * 120.13757 * 359.70503 * 19 15 14 22 22 C 1.38330 * 120.26915 * 0.02562 * 21 19 15 23 23 F 1.35103 * 119.93941 * 179.97438 * 22 21 19 24 24 C 1.39959 * 120.23330 * 0.27756 * 12 11 10 25 25 C 1.36239 * 120.11884 * 359.48148 * 24 12 11 26 26 H 0.96999 * 120.00005 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.06189 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.93927 * 179.97438 * 11 10 9 29 29 H 1.07999 * 120.12770 * 0.02562 * 14 13 12 30 30 H 0.96702 * 117.00718 * 179.97438 * 18 16 15 31 31 H 1.08003 * 119.86047 * 180.02562 * 21 19 15 32 32 H 1.08002 * 119.94659 * 179.72547 * 24 12 11 33 33 H 1.07995 * 120.06217 * 180.25959 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5396 1.4402 0.7001 7 6 2.0080 -1.2123 0.0005 8 1 3.0486 -1.2350 0.2890 9 6 1.3546 -2.4039 -0.3755 10 6 0.2269 -2.3559 -1.2196 11 6 -0.4011 -3.5101 -1.5795 12 6 0.0720 -4.7420 -1.1130 13 6 -0.6143 -5.9921 -1.5066 14 6 0.1190 -7.0587 -2.0203 15 6 -0.5341 -8.2355 -2.3838 16 6 0.2367 -9.3722 -2.9231 17 8 -0.3343 -10.3954 -3.2445 18 8 1.5736 -9.2757 -3.0592 19 6 -1.9234 -8.3344 -2.2418 20 17 -2.7390 -9.7967 -2.7005 21 6 -2.6463 -7.2715 -1.7371 22 6 -2.0035 -6.1031 -1.3694 23 9 -2.7173 -5.0671 -0.8768 24 6 1.1882 -4.7949 -0.2703 25 6 1.8265 -3.6471 0.0917 26 1 -0.4850 0.8400 0.0004 27 1 -0.1387 -1.4060 -1.5805 28 1 -1.2656 -3.4744 -2.2259 29 1 1.1901 -6.9762 -2.1321 30 1 2.0354 -10.0465 -3.4166 31 1 -3.7178 -7.3528 -1.6290 32 1 1.5466 -5.7477 0.0905 33 1 2.6903 -3.6893 0.7386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244612596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:50 Heat of formation + Delta-G solvation = -98.686712 kcal Electronic energy + Delta-G solvation = -22970.117629 eV Core-core repulsion = 19093.637967 eV Total energy + Delta-G solvation = -3876.479662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.67380 -40.38461 -38.73631 -37.51736 -36.40519 -36.01096 -34.06796 -31.70206 -31.19312 -29.68138 -28.85125 -25.44566 -24.47275 -23.02096 -21.65595 -20.92940 -20.08998 -18.14716 -17.71702 -17.52998 -17.03741 -16.27124 -15.77338 -15.57082 -15.29023 -15.06676 -14.27918 -14.12643 -13.80375 -13.51126 -13.29555 -13.03469 -12.95349 -12.69856 -12.19277 -12.05304 -11.68946 -11.56409 -11.50491 -11.40889 -11.19774 -11.05399 -10.73263 -10.61363 -10.06812 -9.88813 -9.60659 -9.44956 -9.02294 -8.61183 -7.73482 -7.39789 -7.01107 -4.56188 0.48578 1.04721 2.02103 2.32298 2.63341 2.91798 2.94822 2.97733 2.98534 3.03614 3.59270 3.75139 4.30620 4.40248 4.64313 4.92738 5.06467 5.21568 5.43466 5.51210 5.83289 5.93928 6.02891 6.13336 6.14465 6.31698 6.39502 6.71100 6.79441 6.83755 7.04476 7.12185 7.41556 7.66033 7.83897 7.84248 7.88154 8.05646 8.40443 8.63589 8.74210 9.91002 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.003055 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.991391 B = 9162.645941 C =10021.999746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.445 4.445 8 H 0.083 0.917 9 C 0.122 3.878 10 C -0.171 4.171 11 C -0.064 4.064 12 C -0.223 4.223 13 C -0.020 4.020 14 C -0.034 4.034 15 C -0.133 4.133 16 C 0.527 3.473 17 O -0.499 6.499 18 O -0.510 6.510 19 C 0.017 3.983 20 Cl -0.036 7.036 21 C -0.156 4.156 22 C 0.136 3.864 23 F -0.118 7.118 24 C -0.054 4.054 25 C -0.230 4.230 26 H 0.286 0.714 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.154 0.846 30 H 0.413 0.587 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 -10.809 -4.085 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.102 0.898 9 C 0.119 3.881 10 C -0.190 4.190 11 C -0.082 4.082 12 C -0.224 4.224 13 C -0.021 4.021 14 C -0.052 4.052 15 C -0.135 4.135 16 C 0.371 3.629 17 O -0.388 6.388 18 O -0.322 6.322 19 C -0.011 4.011 20 Cl -0.007 7.007 21 C -0.176 4.176 22 C 0.115 3.885 23 F -0.096 7.096 24 C -0.073 4.073 25 C -0.250 4.250 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.107 0.893 29 H 0.171 0.829 30 H 0.271 0.729 31 H 0.167 0.833 32 H 0.110 0.890 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.007 -10.663 -4.009 11.567 hybrid contribution 0.273 0.344 -0.091 0.449 sum -1.734 -10.318 -4.100 11.238 Atomic orbital electron populations 1.69818 1.07793 1.29952 1.32195 1.26052 0.94808 1.01814 0.92059 0.86222 0.80526 0.79979 0.79606 1.18981 1.20065 1.18351 1.19746 0.98426 0.91313 1.37800 0.89842 1.17743 0.90654 0.92132 0.87604 1.20968 0.99749 0.96860 1.01455 1.20400 0.97515 0.92035 0.98284 1.17725 1.02850 0.89621 1.12232 1.19153 0.90442 0.95621 0.96892 1.21534 1.00990 0.89564 0.93151 1.18700 0.91191 0.94562 1.09057 1.20611 0.80511 0.86759 0.75069 1.90963 1.70539 1.30819 1.46478 1.84586 1.21267 1.47798 1.78518 1.20453 0.90622 0.89444 1.00536 1.98398 1.78296 1.33703 1.90256 1.20749 1.01262 0.91584 1.04003 1.17966 0.89562 0.84358 0.96564 1.91561 1.77570 1.56089 1.84386 1.20262 0.93946 0.96855 0.96219 1.20648 1.04136 0.92786 1.07401 0.90300 0.86253 0.89303 0.82857 0.72862 0.83335 0.88999 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.68 10.96 55.55 0.61 -18.08 16 2 C 0.07 1.71 5.13 -17.33 -0.09 1.62 16 3 Si 0.91 17.25 29.60 -169.99 -5.03 12.22 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.45 -10.92 9.03 -37.88 -0.34 -11.26 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 9 C 0.12 3.02 5.57 -106.80 -0.60 2.42 16 10 C -0.17 -4.18 8.63 -39.28 -0.34 -4.52 16 11 C -0.06 -1.42 8.78 -39.66 -0.35 -1.76 16 12 C -0.22 -4.59 5.33 -104.63 -0.56 -5.15 16 13 C -0.02 -0.35 5.47 -104.87 -0.57 -0.92 16 14 C -0.03 -0.51 9.07 -38.77 -0.35 -0.86 16 15 C -0.13 -1.91 5.87 -105.00 -0.62 -2.53 16 16 C 0.53 7.01 8.26 34.53 0.29 7.30 16 17 O -0.50 -7.45 14.73 -19.26 -0.28 -7.73 16 18 O -0.51 -5.25 12.67 -40.57 -0.51 -5.76 16 19 C 0.02 0.24 6.36 -38.97 -0.25 -0.01 16 20 Cl -0.04 -0.49 25.99 -51.86 -1.35 -1.84 16 21 C -0.16 -2.19 9.77 -39.60 -0.39 -2.58 16 22 C 0.14 2.23 7.16 -38.88 -0.28 1.96 16 23 F -0.12 -2.13 15.86 2.25 0.04 -2.09 16 24 C -0.05 -1.13 9.44 -39.66 -0.37 -1.50 16 25 C -0.23 -5.22 9.73 -39.28 -0.38 -5.60 16 26 H 0.29 6.23 8.30 -40.82 -0.34 5.90 16 27 H 0.12 3.01 6.16 -52.49 -0.32 2.68 16 28 H 0.09 1.85 7.76 -52.48 -0.41 1.44 16 29 H 0.15 2.17 7.59 -52.49 -0.40 1.77 16 30 H 0.41 2.20 9.11 45.56 0.42 2.62 16 31 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.09 1.65 8.04 -52.49 -0.42 1.23 16 33 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -27.05 315.70 -8.50 -35.55 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -1.53 Total: 6.37 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -5.20 Total: -23.40 kcal Atomic # 7 Polarization: -18.68 SS G_CDS: 0.61 Total: -18.08 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.80 Total: -13.50 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.35 Total: -1.84 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.05 -8.50 -35.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244612596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.132 kcal (2) G-P(sol) polarization free energy of solvation -27.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds