Wall clock time and date at job start Tue Mar 31 2020 12:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48501 * 109.47225 * 269.99818 * 3 2 1 5 5 H 1.48499 * 109.47157 * 29.99986 * 3 2 1 6 6 H 1.48500 * 109.47078 * 149.99771 * 3 2 1 7 7 C 1.39987 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00067 * 197.96119 * 7 2 1 9 9 C 1.41008 * 120.00331 * 17.96056 * 7 2 1 10 10 C 1.40947 * 120.11210 * 24.68888 * 9 7 2 11 11 C 1.36232 * 119.87892 * 180.02562 * 10 9 7 12 12 C 1.39966 * 120.12024 * 359.97438 * 11 10 9 13 13 C 1.47944 * 119.88294 * 179.97438 * 12 11 10 14 14 C 1.39260 * 120.06633 * 129.72343 * 13 12 11 15 15 C 1.39409 * 119.73368 * 179.73069 * 14 13 12 16 16 C 1.47548 * 120.06058 * 180.27510 * 15 14 13 17 17 O 1.21495 * 119.99893 * 180.29216 * 16 15 14 18 18 O 1.34730 * 120.00338 * 0.29166 * 16 15 14 19 19 C 1.40012 * 119.87440 * 0.56561 * 15 14 13 20 20 Cl 1.73601 * 119.92787 * 179.72959 * 19 15 14 21 21 C 1.38098 * 120.13757 * 359.70503 * 19 15 14 22 22 C 1.38330 * 120.26915 * 0.02562 * 21 19 15 23 23 F 1.35103 * 119.93941 * 179.97438 * 22 21 19 24 24 C 1.39959 * 120.23330 * 0.27756 * 12 11 10 25 25 C 1.36239 * 120.11884 * 359.48148 * 24 12 11 26 26 H 0.96999 * 120.00005 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.06189 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.93927 * 179.97438 * 11 10 9 29 29 H 1.07999 * 120.12770 * 0.02562 * 14 13 12 30 30 H 0.96702 * 117.00718 * 179.97438 * 18 16 15 31 31 H 1.08003 * 119.86047 * 180.02562 * 21 19 15 32 32 H 1.08002 * 119.94659 * 179.72547 * 24 12 11 33 33 H 1.07995 * 120.06217 * 180.25959 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5396 1.4402 0.7001 7 6 2.0080 -1.2123 0.0005 8 1 3.0486 -1.2350 0.2890 9 6 1.3546 -2.4039 -0.3755 10 6 0.2269 -2.3559 -1.2196 11 6 -0.4011 -3.5101 -1.5795 12 6 0.0720 -4.7420 -1.1130 13 6 -0.6143 -5.9921 -1.5066 14 6 0.1190 -7.0587 -2.0203 15 6 -0.5341 -8.2355 -2.3838 16 6 0.2367 -9.3722 -2.9231 17 8 -0.3343 -10.3954 -3.2445 18 8 1.5736 -9.2757 -3.0592 19 6 -1.9234 -8.3344 -2.2418 20 17 -2.7390 -9.7967 -2.7005 21 6 -2.6463 -7.2715 -1.7371 22 6 -2.0035 -6.1031 -1.3694 23 9 -2.7173 -5.0671 -0.8768 24 6 1.1882 -4.7949 -0.2703 25 6 1.8265 -3.6471 0.0917 26 1 -0.4850 0.8400 0.0004 27 1 -0.1387 -1.4060 -1.5805 28 1 -1.2656 -3.4744 -2.2259 29 1 1.1901 -6.9762 -2.1321 30 1 2.0354 -10.0465 -3.4166 31 1 -3.7178 -7.3528 -1.6290 32 1 1.5466 -5.7477 0.0905 33 1 2.6903 -3.6893 0.7386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244612596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:49 Heat of formation + Delta-G solvation = -111.353417 kcal Electronic energy + Delta-G solvation = -22970.666899 eV Core-core repulsion = 19093.637967 eV Total energy + Delta-G solvation = -3877.028931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.03682 -41.45456 -40.05638 -39.03725 -37.57266 -36.98250 -35.73934 -33.19290 -32.39832 -31.40696 -30.43094 -27.07905 -25.62716 -24.35655 -23.03434 -22.62418 -21.50716 -19.30754 -19.18798 -18.93817 -18.19282 -17.53564 -17.22907 -16.87892 -16.54225 -16.50900 -15.77830 -15.34752 -15.21854 -15.06530 -14.56269 -14.42356 -14.19751 -13.96412 -13.90316 -13.65556 -13.21713 -12.88620 -12.79732 -12.57537 -12.50505 -12.38682 -12.32841 -12.11004 -11.58198 -11.32015 -11.12917 -11.11062 -10.21843 -10.01136 -9.49092 -9.07563 -8.71451 -6.37465 -0.71529 -0.17586 0.84197 0.87446 1.18667 1.34479 1.39590 1.52581 1.54551 1.97364 2.18077 2.35200 2.68857 3.08247 3.46030 3.64382 3.70860 3.93889 4.05369 4.27127 4.41263 4.46455 4.64880 4.75265 4.81243 5.01013 5.03196 5.11451 5.30034 5.36136 5.44543 5.56458 5.66354 5.93872 6.06273 6.12218 6.30136 6.62808 6.85850 6.96784 6.98528 8.23667 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.003055 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.991391 B = 9162.645941 C =10021.999746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.091 3.909 10 C -0.194 4.194 11 C -0.072 4.072 12 C -0.209 4.209 13 C -0.044 4.044 14 C -0.018 4.018 15 C -0.134 4.134 16 C 0.533 3.467 17 O -0.517 6.517 18 O -0.502 6.502 19 C 0.022 3.978 20 Cl -0.024 7.024 21 C -0.143 4.143 22 C 0.128 3.872 23 F -0.132 7.132 24 C -0.056 4.056 25 C -0.243 4.243 26 H 0.292 0.708 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.166 0.834 30 H 0.436 0.564 31 H 0.174 0.826 32 H 0.124 0.876 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 -12.853 -4.609 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.213 4.213 11 C -0.091 4.091 12 C -0.210 4.210 13 C -0.045 4.045 14 C -0.036 4.036 15 C -0.136 4.136 16 C 0.378 3.622 17 O -0.407 6.407 18 O -0.317 6.317 19 C -0.005 4.005 20 Cl 0.006 6.994 21 C -0.162 4.162 22 C 0.108 3.892 23 F -0.110 7.110 24 C -0.074 4.074 25 C -0.262 4.262 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.183 0.817 30 H 0.299 0.701 31 H 0.192 0.808 32 H 0.142 0.858 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.804 -12.741 -4.542 13.646 hybrid contribution 0.126 0.617 -0.024 0.631 sum -1.678 -12.124 -4.566 13.063 Atomic orbital electron populations 1.69871 1.09206 1.31041 1.33592 1.26860 0.95459 1.04820 0.91058 0.85159 0.79159 0.75582 0.79624 1.18621 1.19309 1.17881 1.19959 0.98735 0.92448 1.40170 0.89869 1.18063 0.91334 0.93333 0.88406 1.20918 1.00753 0.96951 1.02717 1.20565 0.97681 0.92337 0.98489 1.17993 1.02174 0.90388 1.10446 1.19015 0.91000 0.95165 0.99299 1.21527 1.01364 0.88813 0.91942 1.18851 0.91524 0.94746 1.08523 1.20337 0.81318 0.85928 0.74664 1.90968 1.71188 1.31250 1.47291 1.84532 1.19729 1.49274 1.78131 1.20630 0.90852 0.89730 0.99321 1.98413 1.78045 1.32960 1.90026 1.20900 1.02458 0.90272 1.02619 1.18113 0.89259 0.84841 0.97021 1.91534 1.77811 1.56899 1.84752 1.20585 0.93673 0.97553 0.95615 1.20870 1.04793 0.92885 1.07700 0.89762 0.88096 0.88534 0.81687 0.70129 0.80829 0.85808 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.00 10.96 21.83 0.24 -40.76 16 2 C 0.03 1.68 5.13 85.27 0.44 2.12 16 3 Si 0.98 36.22 29.60 68.60 2.03 38.25 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.49 -24.86 9.03 23.37 0.21 -24.65 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.09 4.71 5.57 -21.28 -0.12 4.59 16 10 C -0.19 -9.92 8.63 22.47 0.19 -9.72 16 11 C -0.07 -3.28 8.78 22.22 0.20 -3.09 16 12 C -0.21 -8.48 5.33 -19.87 -0.11 -8.59 16 13 C -0.04 -1.45 5.47 -20.02 -0.11 -1.56 16 14 C -0.02 -0.50 9.07 22.80 0.21 -0.29 16 15 C -0.13 -3.44 5.87 -20.11 -0.12 -3.56 16 16 C 0.53 12.41 8.26 70.28 0.58 12.99 16 17 O -0.52 -13.79 14.73 19.85 0.29 -13.50 16 18 O -0.50 -8.47 12.67 -56.40 -0.71 -9.19 16 19 C 0.02 0.56 6.36 22.67 0.14 0.71 16 20 Cl -0.02 -0.58 25.99 -2.72 -0.07 -0.65 16 21 C -0.14 -3.61 9.77 22.26 0.22 -3.40 16 22 C 0.13 3.99 7.16 22.73 0.16 4.15 16 23 F -0.13 -4.67 15.86 44.97 0.71 -3.95 16 24 C -0.06 -2.28 9.44 22.22 0.21 -2.07 16 25 C -0.24 -11.18 9.73 22.47 0.22 -10.96 16 26 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 27 H 0.10 5.42 6.16 -2.91 -0.02 5.41 16 28 H 0.10 4.11 7.76 -2.91 -0.02 4.09 16 29 H 0.17 4.13 7.59 -2.91 -0.02 4.11 16 30 H 0.44 2.96 9.11 -74.06 -0.67 2.29 16 31 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.12 4.15 8.04 -2.91 -0.02 4.13 16 33 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -59.76 315.70 5.34 -54.43 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.52 Total: 18.70 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 2.33 Total: -43.32 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.24 Total: -40.76 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.42 Total: -22.69 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.71 Total: -3.95 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.07 Total: -0.65 kcal Total: -59.76 5.34 -54.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244612596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.928 kcal (2) G-P(sol) polarization free energy of solvation -59.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds