Wall clock time and date at job start Tue Mar 31 2020 12:42:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30759 * 1
3 3 Si 1.86802 * 120.00215 * 2 1
4 4 H 1.48493 * 109.47285 * 359.97438 * 3 2 1
5 5 H 1.48503 * 109.47307 * 120.00178 * 3 2 1
6 6 H 1.48501 * 109.47016 * 239.99462 * 3 2 1
7 7 C 1.40093 * 120.00004 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00450 * 206.56605 * 7 2 1
9 9 C 1.40887 * 119.99288 * 26.56932 * 7 2 1
10 10 C 1.40973 * 120.13804 * 25.38733 * 9 7 2
11 11 C 1.36156 * 119.91095 * 179.97438 * 10 9 7
12 12 C 1.40095 * 120.17993 * 359.97438 * 11 10 9
13 13 C 1.47851 * 119.86567 * 180.02562 * 12 11 10
14 14 C 1.39753 * 120.00135 * 309.72206 * 13 12 11
15 15 C 1.36555 * 120.15095 * 179.76540 * 14 13 12
16 16 C 1.39833 * 120.14666 * 0.51357 * 15 14 13
17 17 C 1.47582 * 119.99849 * 179.76241 * 16 15 14
18 18 O 1.21496 * 120.00243 * 179.97438 * 17 16 15
19 19 O 1.34751 * 120.00114 * 359.97438 * 17 16 15
20 20 C 1.39790 * 119.99936 * 359.74314 * 16 15 14
21 21 C 1.37771 * 119.85220 * 359.97438 * 20 16 15
22 22 Cl 1.73596 * 120.07473 * 179.97438 * 21 20 16
23 23 C 1.39853 * 120.26369 * 359.97438 * 12 11 10
24 24 C 1.36546 * 120.09519 * 359.78559 * 23 12 11
25 25 F 1.35100 * 120.09353 * 180.23278 * 24 23 12
26 26 H 0.96997 * 120.00396 * 185.88465 * 1 2 3
27 27 H 1.08006 * 120.04134 * 359.97438 * 10 9 7
28 28 H 1.07998 * 119.91043 * 179.97438 * 11 10 9
29 29 H 1.07998 * 119.92238 * 0.02562 * 14 13 12
30 30 H 1.07999 * 119.92632 * 180.25994 * 15 14 13
31 31 H 0.96699 * 116.99512 * 180.02562 * 19 17 16
32 32 H 1.08005 * 120.07052 * 180.02562 * 20 16 15
33 33 H 1.08000 * 119.95155 * 180.02562 * 23 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3076 0.0000 0.0000
3 14 2.2417 1.6177 0.0000
4 1 1.2768 2.7465 -0.0006
5 1 3.0955 1.6964 1.2125
6 1 3.0955 1.6963 -1.2125
7 6 2.0081 -1.2132 0.0005
8 1 3.0025 -1.2625 0.4188
9 6 1.4151 -2.3691 -0.5447
10 6 0.4162 -2.2533 -1.5327
11 6 -0.1534 -3.3734 -2.0569
12 6 0.2509 -4.6407 -1.6174
13 6 -0.3719 -5.8524 -2.1917
14 6 -1.7639 -5.9608 -2.2526
15 6 -2.3423 -7.0765 -2.7868
16 6 -1.5446 -8.1204 -3.2656
17 6 -2.1732 -9.3269 -3.8375
18 8 -1.4801 -10.2337 -4.2540
19 8 -3.5160 -9.4229 -3.8978
20 6 -0.1516 -8.0208 -3.2029
21 6 0.4320 -6.8927 -2.6693
22 17 2.1612 -6.7633 -2.5880
23 6 1.2419 -4.7643 -0.6384
24 6 1.8240 -3.6484 -0.1087
25 9 2.7847 -3.7679 0.8336
26 1 -0.4850 -0.8356 0.0861
27 1 0.1032 -1.2773 -1.8734
28 1 -0.9189 -3.2847 -2.8135
29 1 -2.3835 -5.1585 -1.8801
30 1 -3.4184 -7.1546 -2.8359
31 1 -3.8814 -10.2323 -4.2804
32 1 0.4657 -8.8262 -3.5728
33 1 1.5500 -5.7437 -0.3036
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001245372515.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:42:26
Heat of formation + Delta-G solvation = -115.999923 kcal
Electronic energy + Delta-G solvation = -22899.824969 eV
Core-core repulsion = 19022.594550 eV
Total energy + Delta-G solvation = -3877.230419 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 320.040 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-47.45385 -40.46519 -39.04873 -37.50518 -36.21006 -36.14687 -34.50692 -31.84195
-30.88398 -29.50619 -29.13907 -26.03537 -23.93528 -22.73414 -21.69058 -21.18369
-20.46432 -18.32890 -18.26128 -17.62824 -16.51618 -15.73320 -15.59963 -15.10670
-14.93891 -14.82054 -14.51351 -14.26635 -14.09367 -13.75201 -13.37338 -13.27307
-12.93684 -12.75275 -12.10950 -11.87017 -11.75669 -11.57185 -11.35108 -11.26700
-11.03370 -10.88166 -10.81942 -10.60731 -10.56378 -10.14435 -9.79796 -9.36250
-8.99398 -8.69567 -7.90517 -7.74728 -7.49969 -4.75930 0.55771 1.28926
2.16864 2.31857 2.54852 2.61108 2.98614 2.99762 3.06841 3.20650
3.72626 3.76534 4.20022 4.79634 4.93951 4.97412 5.04187 5.18545
5.37528 5.62355 5.73026 5.85836 5.88962 6.03920 6.15409 6.22434
6.34424 6.40777 6.57825 6.72512 6.73760 7.04530 7.21636 7.37255
7.49059 7.54862 7.69153 7.76074 7.89614 8.31817 8.44794 9.63272
Molecular weight = 320.04amu
Principal moments of inertia in cm(-1)
A = 0.024102 B = 0.003257 C = 0.002986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1161.458324 B = 8596.006527 C = 9375.326075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.766 5.766
2 C 0.037 3.963
3 Si 1.068 2.932
4 H -0.270 1.270
5 H -0.271 1.271
6 H -0.270 1.270
7 C -0.479 4.479
8 H 0.088 0.912
9 C 0.079 3.921
10 C -0.214 4.214
11 C -0.048 4.048
12 C -0.220 4.220
13 C 0.071 3.929
14 C -0.134 4.134
15 C -0.050 4.050
16 C -0.158 4.158
17 C 0.533 3.467
18 O -0.522 6.522
19 O -0.513 6.513
20 C -0.037 4.037
21 C -0.066 4.066
22 Cl -0.055 7.055
23 C -0.064 4.064
24 C -0.034 4.034
25 F -0.161 7.161
26 H 0.304 0.696
27 H 0.115 0.885
28 H 0.100 0.900
29 H 0.139 0.861
30 H 0.138 0.862
31 H 0.412 0.588
32 H 0.141 0.859
33 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.169 -8.625 -4.926 11.197
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.386 5.386
2 C -0.188 4.188
3 Si 0.889 3.111
4 H -0.194 1.194
5 H -0.196 1.196
6 H -0.195 1.195
7 C -0.505 4.505
8 H 0.106 0.894
9 C 0.074 3.926
10 C -0.233 4.233
11 C -0.066 4.066
12 C -0.221 4.221
13 C 0.070 3.930
14 C -0.152 4.152
15 C -0.068 4.068
16 C -0.159 4.159
17 C 0.379 3.621
18 O -0.412 6.412
19 O -0.325 6.325
20 C -0.056 4.056
21 C -0.093 4.093
22 Cl -0.025 7.025
23 C -0.083 4.083
24 C -0.054 4.054
25 F -0.140 7.140
26 H 0.118 0.882
27 H 0.133 0.867
28 H 0.118 0.882
29 H 0.157 0.843
30 H 0.156 0.844
31 H 0.270 0.730
32 H 0.159 0.841
33 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -4.896 -6.845 -4.869 9.723
hybrid contribution 0.241 -2.395 -0.053 2.408
sum -4.655 -9.240 -4.922 11.458
Atomic orbital electron populations
1.70446 1.08265 1.34861 1.25074 1.27308 0.95564 1.04776 0.91192
0.83587 0.75782 0.73136 0.78563 1.19401 1.19636 1.19503 1.20791
1.03692 0.94024 1.31984 0.89440 1.17766 0.92090 0.91275 0.91433
1.20610 1.03898 0.97639 1.01130 1.20360 0.97363 0.91418 0.97502
1.17507 1.06516 0.90539 1.07550 1.19103 0.92172 0.91778 0.89984
1.21057 0.93553 0.98740 1.01880 1.21124 1.00273 0.91867 0.93530
1.18695 0.92801 0.94513 1.09900 1.20806 0.79931 0.86401 0.74971
1.90879 1.63895 1.40465 1.45951 1.84574 1.23119 1.47316 1.77450
1.20941 0.93115 0.96318 0.95229 1.20908 0.85708 0.96756 1.05888
1.98370 1.09155 1.97955 1.97066 1.20284 0.95256 0.96450 0.96293
1.17242 0.97221 0.94131 0.96793 1.91297 1.62291 1.96792 1.63641
0.88190 0.86711 0.88227 0.84342 0.84441 0.73005 0.84076 0.87565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -18.24 12.31 55.56 0.68 -17.55 16
2 C 0.04 0.85 4.90 -17.31 -0.08 0.76 16
3 Si 1.07 19.55 30.01 -169.99 -5.10 14.45 16
4 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16
5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16
6 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16
7 C -0.48 -11.85 8.68 -37.88 -0.33 -12.18 16
8 H 0.09 2.17 7.80 -52.49 -0.41 1.76 16
9 C 0.08 1.93 5.30 -106.73 -0.57 1.36 16
10 C -0.21 -4.85 7.92 -39.29 -0.31 -5.17 16
11 C -0.05 -0.97 9.43 -39.63 -0.37 -1.34 16
12 C -0.22 -4.35 5.13 -104.66 -0.54 -4.88 16
13 C 0.07 1.19 5.47 -104.79 -0.57 0.62 16
14 C -0.13 -1.91 9.43 -39.62 -0.37 -2.29 16
15 C -0.05 -0.62 9.55 -39.59 -0.38 -1.00 16
16 C -0.16 -2.13 5.88 -104.91 -0.62 -2.75 16
17 C 0.53 6.73 8.27 34.54 0.29 7.02 16
18 O -0.52 -7.88 17.12 -19.26 -0.33 -8.21 16
19 O -0.51 -4.66 12.66 -40.63 -0.51 -5.17 16
20 C -0.04 -0.54 9.37 -39.17 -0.37 -0.91 16
21 C -0.07 -1.07 6.27 -39.14 -0.25 -1.31 16
22 Cl -0.05 -0.91 25.95 -51.86 -1.35 -2.25 16
23 C -0.06 -1.36 8.06 -39.59 -0.32 -1.68 16
24 C -0.03 -0.82 7.26 -39.07 -0.28 -1.10 16
25 F -0.16 -3.92 16.70 2.25 0.04 -3.88 16
26 H 0.30 7.38 6.79 -40.82 -0.28 7.10 16
27 H 0.11 2.65 6.52 -52.48 -0.34 2.31 16
28 H 0.10 1.77 8.03 -52.49 -0.42 1.34 16
29 H 0.14 1.81 8.03 -52.49 -0.42 1.39 16
30 H 0.14 1.39 7.59 -52.49 -0.40 0.99 16
31 H 0.41 1.79 9.11 45.56 0.42 2.21 16
32 H 0.14 1.96 7.64 -52.48 -0.40 1.56 16
33 H 0.11 2.14 7.13 -52.49 -0.37 1.77 16
LS Contribution 315.61 15.07 4.76 4.76
Total: -1.00 -27.20 315.61 -8.31 -35.51
By element:
Atomic # 1 Polarization: 8.62 SS G_CDS: -1.42 Total: 7.20 kcal
Atomic # 6 Polarization: -19.76 SS G_CDS: -5.07 Total: -24.84 kcal
Atomic # 7 Polarization: -18.24 SS G_CDS: 0.68 Total: -17.55 kcal
Atomic # 8 Polarization: -12.54 SS G_CDS: -0.84 Total: -13.38 kcal
Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.88 kcal
Atomic # 14 Polarization: 19.55 SS G_CDS: -5.10 Total: 14.45 kcal
Atomic # 17 Polarization: -0.91 SS G_CDS: -1.35 Total: -2.25 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -27.20 -8.31 -35.51 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001245372515.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -80.492 kcal
(2) G-P(sol) polarization free energy of solvation -27.197 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds