Wall clock time and date at job start Tue Mar 31 2020 12:42:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30759 * 1
3 3 Si 1.86802 * 120.00215 * 2 1
4 4 H 1.48493 * 109.47285 * 359.97438 * 3 2 1
5 5 H 1.48503 * 109.47307 * 120.00178 * 3 2 1
6 6 H 1.48501 * 109.47016 * 239.99462 * 3 2 1
7 7 C 1.40093 * 120.00004 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00450 * 206.56605 * 7 2 1
9 9 C 1.40887 * 119.99288 * 26.56932 * 7 2 1
10 10 C 1.40973 * 120.13804 * 25.38733 * 9 7 2
11 11 C 1.36156 * 119.91095 * 179.97438 * 10 9 7
12 12 C 1.40095 * 120.17993 * 359.97438 * 11 10 9
13 13 C 1.47851 * 119.86567 * 180.02562 * 12 11 10
14 14 C 1.39753 * 120.00135 * 309.72206 * 13 12 11
15 15 C 1.36555 * 120.15095 * 179.76540 * 14 13 12
16 16 C 1.39833 * 120.14666 * 0.51357 * 15 14 13
17 17 C 1.47582 * 119.99849 * 179.76241 * 16 15 14
18 18 O 1.21496 * 120.00243 * 179.97438 * 17 16 15
19 19 O 1.34751 * 120.00114 * 359.97438 * 17 16 15
20 20 C 1.39790 * 119.99936 * 359.74314 * 16 15 14
21 21 C 1.37771 * 119.85220 * 359.97438 * 20 16 15
22 22 Cl 1.73596 * 120.07473 * 179.97438 * 21 20 16
23 23 C 1.39853 * 120.26369 * 359.97438 * 12 11 10
24 24 C 1.36546 * 120.09519 * 359.78559 * 23 12 11
25 25 F 1.35100 * 120.09353 * 180.23278 * 24 23 12
26 26 H 0.96997 * 120.00396 * 185.88465 * 1 2 3
27 27 H 1.08006 * 120.04134 * 359.97438 * 10 9 7
28 28 H 1.07998 * 119.91043 * 179.97438 * 11 10 9
29 29 H 1.07998 * 119.92238 * 0.02562 * 14 13 12
30 30 H 1.07999 * 119.92632 * 180.25994 * 15 14 13
31 31 H 0.96699 * 116.99512 * 180.02562 * 19 17 16
32 32 H 1.08005 * 120.07052 * 180.02562 * 20 16 15
33 33 H 1.08000 * 119.95155 * 180.02562 * 23 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3076 0.0000 0.0000
3 14 2.2417 1.6177 0.0000
4 1 1.2768 2.7465 -0.0006
5 1 3.0955 1.6964 1.2125
6 1 3.0955 1.6963 -1.2125
7 6 2.0081 -1.2132 0.0005
8 1 3.0025 -1.2625 0.4188
9 6 1.4151 -2.3691 -0.5447
10 6 0.4162 -2.2533 -1.5327
11 6 -0.1534 -3.3734 -2.0569
12 6 0.2509 -4.6407 -1.6174
13 6 -0.3719 -5.8524 -2.1917
14 6 -1.7639 -5.9608 -2.2526
15 6 -2.3423 -7.0765 -2.7868
16 6 -1.5446 -8.1204 -3.2656
17 6 -2.1732 -9.3269 -3.8375
18 8 -1.4801 -10.2337 -4.2540
19 8 -3.5160 -9.4229 -3.8978
20 6 -0.1516 -8.0208 -3.2029
21 6 0.4320 -6.8927 -2.6693
22 17 2.1612 -6.7633 -2.5880
23 6 1.2419 -4.7643 -0.6384
24 6 1.8240 -3.6484 -0.1087
25 9 2.7847 -3.7679 0.8336
26 1 -0.4850 -0.8356 0.0861
27 1 0.1032 -1.2773 -1.8734
28 1 -0.9189 -3.2847 -2.8135
29 1 -2.3835 -5.1585 -1.8801
30 1 -3.4184 -7.1546 -2.8359
31 1 -3.8814 -10.2323 -4.2804
32 1 0.4657 -8.8262 -3.5728
33 1 1.5500 -5.7437 -0.3036
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001245372515.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:42:26
Heat of formation + Delta-G solvation = -129.062581 kcal
Electronic energy + Delta-G solvation = -22900.391408 eV
Core-core repulsion = 19022.594550 eV
Total energy + Delta-G solvation = -3877.796858 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 320.040 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-49.33173 -41.50513 -40.33787 -39.06219 -37.43391 -37.10815 -36.15858 -33.26272
-32.07087 -31.21474 -30.68980 -27.55155 -25.30400 -24.03187 -23.01188 -22.79118
-21.84265 -20.06651 -19.24987 -18.72084 -17.99507 -17.21431 -16.71431 -16.68725
-16.33614 -16.15199 -16.12362 -15.84832 -15.54585 -14.93239 -14.72960 -14.72115
-14.41741 -14.23212 -13.68606 -13.42179 -13.05206 -12.77707 -12.69365 -12.57539
-12.46085 -12.36003 -12.14223 -11.97644 -11.86211 -11.69680 -11.39236 -11.02277
-10.31120 -9.95621 -9.65492 -9.42063 -9.22617 -6.58373 -0.62031 0.13081
0.62635 0.76547 1.08320 1.41052 1.50367 1.61946 1.80194 2.06021
2.25978 2.44945 2.63822 3.26707 3.59180 3.71662 3.93462 3.97646
4.05618 4.16039 4.23610 4.34423 4.57924 4.74872 4.79161 4.94747
5.01039 5.08019 5.26720 5.27838 5.43173 5.54227 5.59706 5.63219
5.71124 5.82838 5.94659 6.14343 6.55450 6.67490 6.94900 7.85244
Molecular weight = 320.04amu
Principal moments of inertia in cm(-1)
A = 0.024102 B = 0.003257 C = 0.002986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1161.458324 B = 8596.006527 C = 9375.326075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.786 5.786
2 C 0.011 3.989
3 Si 1.115 2.885
4 H -0.263 1.263
5 H -0.261 1.261
6 H -0.262 1.262
7 C -0.528 4.528
8 H 0.071 0.929
9 C 0.057 3.943
10 C -0.220 4.220
11 C -0.047 4.047
12 C -0.194 4.194
13 C 0.040 3.960
14 C -0.123 4.123
15 C -0.033 4.033
16 C -0.148 4.148
17 C 0.542 3.458
18 O -0.548 6.548
19 O -0.498 6.498
20 C -0.042 4.042
21 C -0.068 4.068
22 Cl -0.067 7.067
23 C -0.065 4.065
24 C -0.067 4.067
25 F -0.172 7.172
26 H 0.291 0.709
27 H 0.107 0.893
28 H 0.132 0.868
29 H 0.155 0.845
30 H 0.173 0.827
31 H 0.435 0.565
32 H 0.146 0.854
33 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.616 -10.268 -6.469 14.327
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.406 5.406
2 C -0.209 4.209
3 Si 0.931 3.069
4 H -0.187 1.187
5 H -0.186 1.186
6 H -0.186 1.186
7 C -0.554 4.554
8 H 0.089 0.911
9 C 0.053 3.947
10 C -0.239 4.239
11 C -0.065 4.065
12 C -0.195 4.195
13 C 0.039 3.961
14 C -0.141 4.141
15 C -0.051 4.051
16 C -0.149 4.149
17 C 0.388 3.612
18 O -0.441 6.441
19 O -0.312 6.312
20 C -0.061 4.061
21 C -0.095 4.095
22 Cl -0.038 7.038
23 C -0.084 4.084
24 C -0.086 4.086
25 F -0.151 7.151
26 H 0.104 0.896
27 H 0.125 0.875
28 H 0.150 0.850
29 H 0.173 0.827
30 H 0.191 0.809
31 H 0.298 0.702
32 H 0.164 0.836
33 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -7.376 -8.530 -6.419 12.976
hybrid contribution 0.768 -2.352 0.248 2.487
sum -6.607 -10.882 -6.171 14.148
Atomic orbital electron populations
1.70544 1.08643 1.33838 1.27608 1.28498 0.95625 1.07114 0.89640
0.83026 0.74970 0.69724 0.79202 1.18689 1.18592 1.18635 1.20820
1.03753 0.95560 1.35279 0.91112 1.18058 0.92936 0.91607 0.92112
1.20629 1.03937 0.98273 1.01105 1.20675 0.97521 0.90742 0.97555
1.17814 1.04502 0.91838 1.05324 1.19038 0.93566 0.91115 0.92333
1.21238 0.92237 0.99751 1.00910 1.21423 1.01856 0.90291 0.91533
1.18960 0.92502 0.95153 1.08332 1.20545 0.80889 0.85462 0.74268
1.90892 1.64882 1.41269 1.47040 1.84507 1.20807 1.48914 1.76989
1.21010 0.94002 0.95892 0.95183 1.20961 0.85122 0.97085 1.06323
1.98372 1.10280 1.98007 1.97126 1.20463 0.95420 0.96033 0.96451
1.17602 0.98255 0.95022 0.97769 1.91250 1.62851 1.96855 1.64147
0.89633 0.87510 0.85047 0.82740 0.80928 0.70205 0.83625 0.86629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -38.77 12.31 21.85 0.27 -38.50 16
2 C 0.01 0.53 4.90 85.30 0.42 0.95 16
3 Si 1.11 40.39 30.01 68.60 2.06 42.45 16
4 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16
5 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16
6 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16
7 C -0.53 -27.66 8.68 23.37 0.20 -27.46 16
8 H 0.07 3.78 7.80 -2.91 -0.02 3.76 16
9 C 0.06 2.91 5.30 -21.23 -0.11 2.80 16
10 C -0.22 -10.23 7.92 22.46 0.18 -10.05 16
11 C -0.05 -1.84 9.43 22.24 0.21 -1.63 16
12 C -0.19 -7.44 5.13 -19.89 -0.10 -7.54 16
13 C 0.04 1.27 5.47 -19.97 -0.11 1.16 16
14 C -0.12 -3.01 9.43 22.24 0.21 -2.80 16
15 C -0.03 -0.66 9.55 22.26 0.21 -0.45 16
16 C -0.15 -3.39 5.88 -20.05 -0.12 -3.51 16
17 C 0.54 11.40 8.27 70.29 0.58 11.98 16
18 O -0.55 -14.82 17.12 19.85 0.34 -14.48 16
19 O -0.50 -6.43 12.66 -56.61 -0.72 -7.15 16
20 C -0.04 -1.11 9.37 22.53 0.21 -0.90 16
21 C -0.07 -2.07 6.27 22.55 0.14 -1.93 16
22 Cl -0.07 -2.18 25.95 -2.72 -0.07 -2.25 16
23 C -0.06 -2.79 8.06 22.27 0.18 -2.61 16
24 C -0.07 -3.33 7.26 22.60 0.16 -3.16 16
25 F -0.17 -8.81 16.70 44.97 0.75 -8.06 16
26 H 0.29 14.78 6.79 -92.71 -0.63 14.15 16
27 H 0.11 5.08 6.52 -2.91 -0.02 5.07 16
28 H 0.13 4.31 8.03 -2.91 -0.02 4.28 16
29 H 0.15 3.33 8.03 -2.91 -0.02 3.30 16
30 H 0.17 2.34 7.59 -2.91 -0.02 2.31 16
31 H 0.44 1.57 9.11 -74.06 -0.67 0.89 16
32 H 0.15 3.74 7.64 -2.91 -0.02 3.71 16
33 H 0.12 4.68 7.13 -2.91 -0.02 4.66 16
Total: -1.00 -61.56 315.61 5.56 -56.00
By element:
Atomic # 1 Polarization: 16.50 SS G_CDS: 0.66 Total: 17.16 kcal
Atomic # 6 Polarization: -47.43 SS G_CDS: 2.27 Total: -45.17 kcal
Atomic # 7 Polarization: -38.77 SS G_CDS: 0.27 Total: -38.50 kcal
Atomic # 8 Polarization: -21.25 SS G_CDS: -0.38 Total: -21.63 kcal
Atomic # 9 Polarization: -8.81 SS G_CDS: 0.75 Total: -8.06 kcal
Atomic # 14 Polarization: 40.39 SS G_CDS: 2.06 Total: 42.45 kcal
Atomic # 17 Polarization: -2.18 SS G_CDS: -0.07 Total: -2.25 kcal
Total: -61.56 5.56 -56.00 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001245372515.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.067 kcal
(2) G-P(sol) polarization free energy of solvation -61.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.623 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.063 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds