Wall clock time and date at job start Tue Mar 31 2020 12:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47107 * 269.99553 * 3 2 1 5 5 H 1.48498 * 109.46984 * 29.99616 * 3 2 1 6 6 H 1.48500 * 109.47138 * 150.00000 * 3 2 1 7 7 C 1.39904 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99888 * 197.93894 * 7 2 1 9 9 C 1.41351 * 120.00207 * 17.93490 * 7 2 1 10 10 C 1.40851 * 120.15071 * 204.55568 * 9 7 2 11 11 C 1.37559 * 120.04048 * 179.97438 * 10 9 7 12 12 C 1.38754 * 120.35874 * 0.23790 * 11 10 9 13 13 F 1.35088 * 119.85060 * 179.74412 * 12 11 10 14 14 C 1.40065 * 120.30101 * 359.48260 * 12 11 10 15 15 C 1.48230 * 120.02479 * 180.26097 * 14 12 11 16 16 C 1.39537 * 119.97548 * 245.27694 * 15 14 12 17 17 C 1.37620 * 120.03974 * 179.97438 * 16 15 14 18 18 C 1.39786 * 120.00285 * 0.02562 * 17 16 15 19 19 C 1.47583 * 120.02599 * 179.97438 * 18 17 16 20 20 O 1.21492 * 120.00106 * 359.97438 * 19 18 17 21 21 O 1.34739 * 120.00048 * 179.97438 * 19 18 17 22 22 C 1.39738 * 119.95188 * 359.97438 * 18 17 16 23 23 C 1.37784 * 119.95707 * 359.72189 * 22 18 17 24 24 Cl 1.73602 * 120.00092 * 180.27529 * 23 22 18 25 25 C 1.38774 * 119.94995 * 0.53470 * 14 12 11 26 26 H 0.97002 * 120.00074 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.98156 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.81973 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.98113 * 359.97438 * 16 15 14 30 30 H 1.08001 * 119.99813 * 180.02562 * 17 16 15 31 31 H 0.96705 * 116.99949 * 179.97438 * 21 19 18 32 32 H 1.08008 * 120.01763 * 180.02562 * 22 18 17 33 33 H 1.08003 * 120.17162 * 179.74213 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0463 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4401 0.7000 7 6 2.0080 -1.2116 0.0005 8 1 3.0487 -1.2343 0.2886 9 6 1.3528 -2.4062 -0.3759 10 6 1.8259 -3.6491 0.0882 11 6 1.1862 -4.8101 -0.2791 12 6 0.0764 -4.7664 -1.1109 13 9 -0.5409 -5.9133 -1.4693 14 6 -0.4100 -3.5381 -1.5762 15 6 -1.5995 -3.4981 -2.4598 16 6 -1.4758 -3.0506 -3.7757 17 6 -2.5791 -3.0134 -4.5973 18 6 -3.8249 -3.4236 -4.1138 19 6 -5.0086 -3.3834 -4.9943 20 8 -4.9006 -2.9933 -6.1398 21 8 -6.2090 -3.7793 -4.5278 22 6 -3.9487 -3.8717 -2.7960 23 6 -2.8416 -3.9141 -1.9768 24 17 -2.9928 -4.4773 -0.3417 25 6 0.2258 -2.3590 -1.2139 26 1 -0.4850 0.8401 -0.0004 27 1 2.6915 -3.6906 0.7327 28 1 1.5522 -5.7612 0.0784 29 1 -0.5135 -2.7333 -4.1495 30 1 -2.4825 -2.6674 -5.6158 31 1 -6.9550 -3.7347 -5.1416 32 1 -4.9107 -4.1892 -2.4214 33 1 -0.1438 -1.4102 -1.5740 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245373607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:42 Heat of formation + Delta-G solvation = -120.552512 kcal Electronic energy + Delta-G solvation = -23367.826155 eV Core-core repulsion = 19490.398321 eV Total energy + Delta-G solvation = -3877.427834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.27674 -41.52155 -40.19430 -38.88832 -37.43254 -37.09930 -35.54705 -33.80643 -32.00780 -31.26516 -30.32634 -27.00317 -25.88778 -24.02612 -23.01369 -22.78324 -21.70972 -19.42987 -19.18491 -18.58824 -17.99623 -17.30401 -16.84409 -16.71201 -16.64672 -16.28512 -16.05229 -15.80325 -15.16561 -14.92946 -14.61529 -14.43812 -14.24653 -13.82127 -13.74653 -13.35017 -13.04704 -12.80318 -12.71224 -12.68844 -12.53659 -12.44267 -12.14828 -12.09526 -11.77297 -11.70374 -11.37303 -11.03006 -10.25703 -9.92973 -9.39572 -9.21122 -8.67909 -6.35261 -0.62237 0.06449 0.69453 0.89515 1.09638 1.37451 1.42299 1.50290 1.54498 1.97819 2.21002 2.49527 2.61498 3.50850 3.52828 3.68375 3.89986 3.94709 4.02272 4.22948 4.30645 4.34863 4.69379 4.77533 4.88436 4.99718 5.07766 5.10358 5.21763 5.27440 5.45957 5.50052 5.52597 5.74633 5.83006 6.01097 6.23824 6.55714 6.86724 6.89129 6.92494 8.28313 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.004534 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.133652 B = 6174.351246 C = 7332.287189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.040 3.960 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.076 3.924 10 C -0.206 4.206 11 C -0.119 4.119 12 C -0.024 4.024 13 F -0.162 7.162 14 C -0.077 4.077 15 C 0.007 3.993 16 C -0.113 4.113 17 C -0.042 4.042 18 C -0.135 4.135 19 C 0.546 3.454 20 O -0.538 6.538 21 O -0.501 6.501 22 C -0.045 4.045 23 C -0.052 4.052 24 Cl -0.060 7.060 25 C -0.132 4.132 26 H 0.290 0.710 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.162 0.838 31 H 0.437 0.563 32 H 0.167 0.833 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 -3.214 -6.096 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.073 3.927 10 C -0.225 4.225 11 C -0.137 4.137 12 C -0.044 4.044 13 F -0.141 7.141 14 C -0.078 4.078 15 C 0.007 3.993 16 C -0.131 4.131 17 C -0.060 4.060 18 C -0.136 4.136 19 C 0.391 3.609 20 O -0.430 6.430 21 O -0.315 6.315 22 C -0.064 4.064 23 C -0.079 4.079 24 Cl -0.030 7.030 25 C -0.152 4.152 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.147 0.853 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.299 0.701 32 H 0.185 0.815 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.929 -3.080 -5.966 10.390 hybrid contribution -0.184 0.422 0.070 0.466 sum -8.113 -2.658 -5.896 10.375 Atomic orbital electron populations 1.69862 1.08941 1.30855 1.34590 1.26702 0.95375 1.04395 0.91136 0.85239 0.79177 0.76054 0.79577 1.18630 1.19647 1.18059 1.19842 0.98687 0.91944 1.40949 0.89791 1.17890 0.91784 0.93303 0.89696 1.21099 1.03895 0.91791 1.05727 1.20721 0.95380 0.99127 0.98521 1.17294 0.98669 0.80248 1.08215 1.91307 1.82875 1.48499 1.91456 1.18493 0.95982 0.92842 1.00529 1.19210 0.91688 0.94277 0.94164 1.21326 1.00406 1.00007 0.91345 1.21400 0.89817 0.93928 1.00849 1.19046 0.92490 1.08451 0.93646 1.20400 0.83326 0.72551 0.84616 1.90886 1.86423 1.45516 1.20217 1.84529 1.18818 1.78649 1.49503 1.21351 0.98267 0.95230 0.91526 1.21035 0.94601 1.04330 0.87931 1.98367 1.97940 1.87545 1.19198 1.21185 0.98444 0.95243 1.00306 0.89911 0.86563 0.85310 0.83226 0.82087 0.70066 0.81505 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.00 10.96 21.82 0.24 -39.76 16 2 C 0.04 1.87 5.13 85.24 0.44 2.31 16 3 Si 0.98 35.56 29.60 68.60 2.03 37.59 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 7 C -0.49 -24.01 9.04 23.44 0.21 -23.80 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 3.77 5.57 -21.32 -0.12 3.65 16 10 C -0.21 -9.33 9.78 22.75 0.22 -9.11 16 11 C -0.12 -5.06 9.99 22.23 0.22 -4.84 16 12 C -0.02 -1.07 6.47 22.84 0.15 -0.92 16 13 F -0.16 -6.87 16.02 44.97 0.72 -6.15 16 14 C -0.08 -3.42 4.65 -20.05 -0.09 -3.51 16 15 C 0.01 0.29 5.01 -19.98 -0.10 0.19 16 16 C -0.11 -3.65 9.71 22.44 0.22 -3.43 16 17 C -0.04 -1.16 9.58 22.50 0.22 -0.94 16 18 C -0.13 -3.64 5.88 -20.07 -0.12 -3.76 16 19 C 0.55 12.90 8.27 70.29 0.58 13.48 16 20 O -0.54 -15.07 17.12 19.86 0.34 -14.73 16 21 O -0.50 -8.15 12.67 -56.49 -0.72 -8.87 16 22 C -0.05 -1.28 9.38 22.52 0.21 -1.07 16 23 C -0.05 -1.84 6.13 22.49 0.14 -1.70 16 24 Cl -0.06 -2.16 26.74 -2.72 -0.07 -2.23 16 25 C -0.13 -6.42 8.36 22.95 0.19 -6.23 16 26 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 27 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 28 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 29 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.16 3.79 7.64 -2.91 -0.02 3.77 16 31 H 0.44 2.64 9.11 -74.05 -0.67 1.97 16 32 H 0.17 3.90 7.60 -2.91 -0.02 3.88 16 33 H 0.12 5.90 6.16 -2.91 -0.02 5.88 16 Total: -1.00 -59.41 318.23 5.43 -53.98 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.52 Total: 19.85 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 2.37 Total: -39.67 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.24 Total: -39.76 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.38 Total: -23.60 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.72 Total: -6.15 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.07 Total: -2.23 kcal Total: -59.41 5.43 -53.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245373607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.572 kcal (2) G-P(sol) polarization free energy of solvation -59.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds