Wall clock time and date at job start Tue Mar 31 2020 12:37:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36933 * 119.99905 * 2 1
4 4 H 1.07997 * 120.00176 * 202.37727 * 3 2 1
5 5 C 1.38814 * 120.00142 * 22.36592 * 3 2 1
6 6 N 1.31616 * 119.99924 * 11.33757 * 5 3 2
7 7 Si 1.86799 * 120.00140 * 191.33174 * 5 3 2
8 8 H 1.48500 * 109.47385 * 90.00378 * 7 5 3
9 9 H 1.48500 * 109.47370 * 210.00184 * 7 5 3
10 10 H 1.48498 * 109.47205 * 330.00116 * 7 5 3
11 11 C 1.46497 * 120.00188 * 179.97438 * 2 1 3
12 12 C 1.50697 * 109.47685 * 270.00680 * 11 2 1
13 13 C 1.39327 * 120.02860 * 270.02474 * 12 11 2
14 14 N 1.31091 * 121.74401 * 179.97438 * 13 12 11
15 15 C 1.33689 * 121.32066 * 359.95398 * 14 13 12
16 16 C 1.40561 * 121.06287 * 180.02562 * 15 14 13
17 17 C 1.36171 * 119.74615 * 180.02562 * 16 15 14
18 18 Br 1.89095 * 119.47858 * 180.02562 * 17 16 15
19 19 C 1.39452 * 121.04160 * 359.97438 * 17 16 15
20 20 C 1.36113 * 120.85603 * 0.28008 * 19 17 16
21 21 C 1.40445 * 119.63021 * 359.50118 * 20 19 17
22 22 C 1.36588 * 120.03350 * 89.99554 * 12 11 2
23 23 H 1.08994 * 109.47241 * 274.20677 * 1 2 3
24 24 H 1.08998 * 109.46948 * 34.21547 * 1 2 3
25 25 H 1.08998 * 109.46537 * 154.21033 * 1 2 3
26 26 H 0.97005 * 120.00047 * 180.02562 * 6 5 3
27 27 H 1.09005 * 109.47100 * 150.00407 * 11 2 1
28 28 H 1.09005 * 109.47087 * 30.00570 * 11 2 1
29 29 H 1.07994 * 119.12305 * 359.97438 * 13 12 11
30 30 H 1.08004 * 120.12961 * 0.05295 * 16 15 14
31 31 H 1.07996 * 119.56784 * 179.97438 * 19 17 16
32 32 H 1.08003 * 120.18495 * 179.74242 * 20 19 17
33 33 H 1.07996 * 120.91854 * 0.02562 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1687 1.2211 -0.3561
5 6 1.5339 2.3428 0.4574
6 7 0.3844 2.2689 1.0942
7 14 2.3369 4.0047 0.1695
8 1 1.8679 4.5636 -1.1239
9 1 1.9686 4.9300 1.2711
10 1 3.8124 3.8418 0.1324
11 6 2.1976 -1.2687 0.0006
12 6 2.4487 -1.7033 1.4215
13 6 3.6092 -1.3007 2.0790
14 7 3.8613 -1.6586 3.3146
15 6 3.0117 -2.4284 4.0023
16 6 3.2872 -2.8084 5.3272
17 6 2.4032 -3.5937 6.0026
18 35 2.7810 -4.0998 7.7849
19 6 1.2231 -4.0297 5.4008
20 6 0.9253 -3.6860 4.1179
21 6 1.8122 -2.8732 3.3931
22 6 1.5385 -2.4916 2.0662
23 1 -0.3633 0.0754 1.0248
24 1 -0.3633 0.8498 -0.5779
25 1 -0.3632 -0.9253 -0.4471
26 1 -0.0461 3.0774 1.4135
27 1 3.1500 -1.1385 -0.5133
28 1 1.6085 -2.0286 -0.5130
29 1 4.3199 -0.6775 1.5567
30 1 4.1963 -2.4785 5.8080
31 1 0.5390 -4.6521 5.9584
32 1 0.0103 -4.0331 3.6612
33 1 0.6337 -2.8128 1.5718
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001248867429.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:58
Heat of formation + Delta-G solvation = 78.237000 kcal
Electronic energy + Delta-G solvation = -18260.893452 eV
Core-core repulsion = 15333.411149 eV
Total energy + Delta-G solvation = -2927.482303 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 320.022 amu
Computer time = 1.62 seconds
Orbital eigenvalues (eV)
-40.52989 -37.32332 -35.61645 -33.36408 -32.20813 -30.89849 -30.00867 -29.22137
-26.26350 -25.66899 -23.94175 -22.56574 -21.97520 -20.77847 -17.68710 -17.11092
-16.71650 -16.21158 -14.99200 -14.43124 -14.34015 -14.20899 -13.79112 -13.60729
-13.35928 -12.95436 -12.60404 -12.17717 -12.06757 -11.57497 -11.51850 -11.02452
-10.92393 -10.76476 -10.70453 -10.54270 -10.36076 -10.13899 -10.08024 -9.76162
-9.15304 -8.69188 -8.36457 -8.01266 -6.96226 -5.89656 -3.32508 0.56876
0.99385 1.56686 2.25732 3.02232 3.31240 3.37529 3.38854 4.31835
4.43014 4.57274 4.78373 5.01981 5.10753 5.22738 5.27709 5.38964
5.43243 5.53934 5.69170 5.84905 5.98510 6.11541 6.16481 6.30738
6.37701 6.44039 6.59934 6.69238 6.81805 7.11938 7.23741 7.58085
7.66636 8.21258 8.27275 9.05115 9.66544 10.14369 11.14265
Molecular weight = 320.02amu
Principal moments of inertia in cm(-1)
A = 0.023365 B = 0.003284 C = 0.003135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1198.061794 B = 8524.291403 C = 8930.180418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.160 3.840
2 N -0.586 5.586
3 C -0.259 4.259
4 H 0.074 0.926
5 C 0.006 3.994
6 N -0.900 5.900
7 Si 0.908 3.092
8 H -0.286 1.286
9 H -0.290 1.290
10 H -0.276 1.276
11 C 0.180 3.820
12 C -0.122 4.122
13 C 0.163 3.837
14 N -0.481 5.481
15 C 0.114 3.886
16 C -0.052 4.052
17 C -0.086 4.086
18 Br -0.059 7.059
19 C -0.108 4.108
20 C -0.085 4.085
21 C -0.086 4.086
22 C -0.072 4.072
23 H 0.029 0.971
24 H 0.050 0.950
25 H 0.000 1.000
26 H 0.256 0.744
27 H 0.061 0.939
28 H 0.054 0.946
29 H 0.158 0.842
30 H 0.139 0.861
31 H 0.130 0.870
32 H 0.134 0.866
33 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.182 -14.586 8.445 16.995
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 N -0.305 5.305
3 C -0.389 4.389
4 H 0.092 0.908
5 C -0.194 4.194
6 N -0.542 5.542
7 Si 0.738 3.262
8 H -0.212 1.212
9 H -0.216 1.216
10 H -0.202 1.202
11 C 0.052 3.948
12 C -0.128 4.128
13 C -0.010 4.010
14 N -0.189 5.189
15 C -0.009 4.009
16 C -0.073 4.073
17 C -0.167 4.167
18 Br 0.026 6.974
19 C -0.128 4.128
20 C -0.105 4.105
21 C -0.088 4.088
22 C -0.099 4.099
23 H 0.047 0.953
24 H 0.069 0.931
25 H 0.018 0.982
26 H 0.066 0.934
27 H 0.079 0.921
28 H 0.072 0.928
29 H 0.176 0.824
30 H 0.157 0.843
31 H 0.148 0.852
32 H 0.152 0.848
33 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 2.930 -14.348 9.644 17.534
hybrid contribution -0.642 0.999 -0.590 1.326
sum 2.288 -13.350 9.054 16.291
Atomic orbital electron populations
1.20881 0.82023 0.96005 0.99502 1.44266 1.02164 1.00329 1.83746
1.19311 0.98630 0.84900 1.36033 0.90785 1.25124 0.97572 0.98937
0.97732 1.70066 1.17568 1.27569 1.39045 0.86196 0.79033 0.83569
0.77444 1.21237 1.21606 1.20166 1.20042 0.97203 0.88857 0.88664
1.22040 0.93927 0.93736 1.03117 1.22920 0.95147 0.93492 0.89403
1.68003 1.31259 1.11423 1.08247 1.18617 0.91470 0.96786 0.94010
1.20680 0.98833 0.95318 0.92466 1.21265 0.98877 1.04643 0.91950
1.96663 1.95169 1.91407 1.14188 1.20640 0.95681 1.00995 0.95465
1.20944 0.98782 0.96958 0.93813 1.18902 0.95643 0.98875 0.95393
1.21183 0.99158 0.96983 0.92603 0.95265 0.93145 0.98163 0.93421
0.92104 0.92818 0.82448 0.84324 0.85194 0.84833 0.85006
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 49.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.71 9.01 59.85 0.54 4.25 16
2 N -0.59 -13.66 2.91 -182.50 -0.53 -14.19 16
3 C -0.26 -6.67 9.67 -15.06 -0.15 -6.81 16
4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16
5 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16
6 N -0.90 -25.37 10.59 55.49 0.59 -24.79 16
7 Si 0.91 21.14 29.57 -169.99 -5.03 16.12 16
8 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16
11 C 0.18 3.34 5.83 -5.20 -0.03 3.31 16
12 C -0.12 -2.23 5.45 -104.81 -0.57 -2.80 16
13 C 0.16 3.06 10.81 -17.46 -0.19 2.87 16
14 N -0.48 -9.18 10.34 -10.98 -0.11 -9.29 16
15 C 0.11 2.03 6.60 -84.86 -0.56 1.47 16
16 C -0.05 -0.81 9.68 -39.45 -0.38 -1.19 16
17 C -0.09 -1.19 6.18 -39.87 -0.25 -1.43 16
18 Br -0.06 -0.69 33.65 -68.01 -2.29 -2.98 16
19 C -0.11 -1.39 9.68 -39.89 -0.39 -1.78 16
20 C -0.09 -1.16 9.77 -39.51 -0.39 -1.55 16
21 C -0.09 -1.43 5.74 -106.80 -0.61 -2.04 16
22 C -0.07 -1.22 9.54 -39.23 -0.37 -1.59 16
23 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16
24 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16
25 H 0.00 0.00 7.84 -51.93 -0.41 -0.41 16
26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
27 H 0.06 1.06 7.98 -51.93 -0.41 0.64 16
28 H 0.05 0.88 7.80 -51.93 -0.41 0.47 16
29 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16
30 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16
31 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16
32 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16
33 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16
LS Contribution 306.15 15.07 4.61 4.61
Total: -1.00 -29.02 306.15 -9.84 -38.86
By element:
Atomic # 1 Polarization: 2.54 SS G_CDS: -3.65 Total: -1.11 kcal
Atomic # 6 Polarization: -3.80 SS G_CDS: -3.43 Total: -7.23 kcal
Atomic # 7 Polarization: -48.21 SS G_CDS: -0.06 Total: -48.27 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal
Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -29.02 -9.84 -38.86 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001248867429.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.099 kcal
(2) G-P(sol) polarization free energy of solvation -29.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.075 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.62 seconds