Wall clock time and date at job start Tue Mar 31 2020 12:37:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36933 * 119.99905 * 2 1
4 4 H 1.07997 * 120.00176 * 202.37727 * 3 2 1
5 5 C 1.38814 * 120.00142 * 22.36592 * 3 2 1
6 6 N 1.31616 * 119.99924 * 11.33757 * 5 3 2
7 7 Si 1.86799 * 120.00140 * 191.33174 * 5 3 2
8 8 H 1.48500 * 109.47385 * 90.00378 * 7 5 3
9 9 H 1.48500 * 109.47370 * 210.00184 * 7 5 3
10 10 H 1.48498 * 109.47205 * 330.00116 * 7 5 3
11 11 C 1.46497 * 120.00188 * 179.97438 * 2 1 3
12 12 C 1.50697 * 109.47685 * 270.00680 * 11 2 1
13 13 C 1.39327 * 120.02860 * 270.02474 * 12 11 2
14 14 N 1.31091 * 121.74401 * 179.97438 * 13 12 11
15 15 C 1.33689 * 121.32066 * 359.95398 * 14 13 12
16 16 C 1.40561 * 121.06287 * 180.02562 * 15 14 13
17 17 C 1.36171 * 119.74615 * 180.02562 * 16 15 14
18 18 Br 1.89095 * 119.47858 * 180.02562 * 17 16 15
19 19 C 1.39452 * 121.04160 * 359.97438 * 17 16 15
20 20 C 1.36113 * 120.85603 * 0.28008 * 19 17 16
21 21 C 1.40445 * 119.63021 * 359.50118 * 20 19 17
22 22 C 1.36588 * 120.03350 * 89.99554 * 12 11 2
23 23 H 1.08994 * 109.47241 * 274.20677 * 1 2 3
24 24 H 1.08998 * 109.46948 * 34.21547 * 1 2 3
25 25 H 1.08998 * 109.46537 * 154.21033 * 1 2 3
26 26 H 0.97005 * 120.00047 * 180.02562 * 6 5 3
27 27 H 1.09005 * 109.47100 * 150.00407 * 11 2 1
28 28 H 1.09005 * 109.47087 * 30.00570 * 11 2 1
29 29 H 1.07994 * 119.12305 * 359.97438 * 13 12 11
30 30 H 1.08004 * 120.12961 * 0.05295 * 16 15 14
31 31 H 1.07996 * 119.56784 * 179.97438 * 19 17 16
32 32 H 1.08003 * 120.18495 * 179.74242 * 20 19 17
33 33 H 1.07996 * 120.91854 * 0.02562 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1687 1.2211 -0.3561
5 6 1.5339 2.3428 0.4574
6 7 0.3844 2.2689 1.0942
7 14 2.3369 4.0047 0.1695
8 1 1.8679 4.5636 -1.1239
9 1 1.9686 4.9300 1.2711
10 1 3.8124 3.8418 0.1324
11 6 2.1976 -1.2687 0.0006
12 6 2.4487 -1.7033 1.4215
13 6 3.6092 -1.3007 2.0790
14 7 3.8613 -1.6586 3.3146
15 6 3.0117 -2.4284 4.0023
16 6 3.2872 -2.8084 5.3272
17 6 2.4032 -3.5937 6.0026
18 35 2.7810 -4.0998 7.7849
19 6 1.2231 -4.0297 5.4008
20 6 0.9253 -3.6860 4.1179
21 6 1.8122 -2.8732 3.3931
22 6 1.5385 -2.4916 2.0662
23 1 -0.3633 0.0754 1.0248
24 1 -0.3633 0.8498 -0.5779
25 1 -0.3632 -0.9253 -0.4471
26 1 -0.0461 3.0774 1.4135
27 1 3.1500 -1.1385 -0.5133
28 1 1.6085 -2.0286 -0.5130
29 1 4.3199 -0.6775 1.5567
30 1 4.1963 -2.4785 5.8080
31 1 0.5390 -4.6521 5.9584
32 1 0.0103 -4.0331 3.6612
33 1 0.6337 -2.8128 1.5718
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001248867429.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:57
Heat of formation + Delta-G solvation = 63.081570 kcal
Electronic energy + Delta-G solvation = -18261.550641 eV
Core-core repulsion = 15333.411149 eV
Total energy + Delta-G solvation = -2928.139492 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 320.022 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.80852 -38.62926 -37.23777 -34.75222 -33.65090 -32.42793 -31.21329 -30.52793
-28.01412 -27.28585 -25.21864 -24.08222 -23.22317 -22.33779 -18.95867 -18.77822
-18.12797 -17.53887 -16.78466 -15.74209 -15.62076 -15.52509 -15.35585 -15.08313
-14.91631 -14.36727 -13.93817 -13.63124 -13.37969 -13.11895 -12.84464 -12.77834
-12.56312 -12.31551 -12.22794 -12.00253 -11.87081 -11.83095 -11.36018 -11.03383
-10.69821 -10.46244 -9.61569 -9.24557 -8.82124 -7.85062 -5.31311 -0.64821
-0.25858 0.47825 0.97459 1.46552 1.47630 1.55267 1.81706 2.50643
3.03947 3.30225 3.36283 3.60339 3.83701 3.86532 3.91407 4.02607
4.10257 4.21764 4.40809 4.65964 4.71652 4.82001 4.88578 4.95337
5.03443 5.08627 5.19406 5.34661 5.45663 5.52400 5.63802 5.74468
5.81297 6.30939 6.91406 7.13715 7.84408 8.26427 9.17862
Molecular weight = 320.02amu
Principal moments of inertia in cm(-1)
A = 0.023365 B = 0.003284 C = 0.003135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1198.061794 B = 8524.291403 C = 8930.180418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.176 3.824
2 N -0.605 5.605
3 C -0.258 4.258
4 H 0.079 0.921
5 C -0.050 4.050
6 N -0.937 5.937
7 Si 0.962 3.038
8 H -0.284 1.284
9 H -0.302 1.302
10 H -0.266 1.266
11 C 0.183 3.817
12 C -0.139 4.139
13 C 0.146 3.854
14 N -0.503 5.503
15 C 0.094 3.906
16 C -0.074 4.074
17 C -0.078 4.078
18 Br -0.035 7.035
19 C -0.104 4.104
20 C -0.080 4.080
21 C -0.105 4.105
22 C -0.061 4.061
23 H -0.001 1.001
24 H 0.019 0.981
25 H 0.038 0.962
26 H 0.246 0.754
27 H 0.070 0.930
28 H 0.081 0.919
29 H 0.159 0.841
30 H 0.141 0.859
31 H 0.164 0.836
32 H 0.168 0.832
33 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.829 -16.896 9.179 19.315
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 N -0.326 5.326
3 C -0.388 4.388
4 H 0.097 0.903
5 C -0.245 4.245
6 N -0.583 5.583
7 Si 0.790 3.210
8 H -0.211 1.211
9 H -0.229 1.229
10 H -0.191 1.191
11 C 0.056 3.944
12 C -0.144 4.144
13 C -0.026 4.026
14 N -0.212 5.212
15 C -0.029 4.029
16 C -0.094 4.094
17 C -0.159 4.159
18 Br 0.051 6.949
19 C -0.123 4.123
20 C -0.099 4.099
21 C -0.107 4.107
22 C -0.088 4.088
23 H 0.017 0.983
24 H 0.038 0.962
25 H 0.057 0.943
26 H 0.055 0.945
27 H 0.088 0.912
28 H 0.100 0.900
29 H 0.176 0.824
30 H 0.159 0.841
31 H 0.181 0.819
32 H 0.185 0.815
33 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 2.625 -16.712 10.384 19.850
hybrid contribution -0.479 1.406 -0.632 1.614
sum 2.146 -15.306 9.752 18.275
Atomic orbital electron populations
1.20591 0.82398 0.96506 0.97416 1.44329 1.02252 1.01268 1.84714
1.19616 0.98566 0.86145 1.34469 0.90312 1.25753 0.98356 1.01753
0.98659 1.70231 1.19223 1.27305 1.41565 0.85340 0.78719 0.80222
0.76678 1.21076 1.22904 1.19079 1.20129 0.97596 0.87497 0.89132
1.21941 0.94604 0.95402 1.02454 1.23036 0.95842 0.94040 0.89726
1.67971 1.32230 1.12360 1.08609 1.19027 0.92042 0.96896 0.94909
1.20759 0.99853 0.96746 0.92071 1.21567 0.98524 1.02871 0.92957
1.96702 1.95160 1.90983 1.12085 1.21065 0.95462 1.00391 0.95362
1.21316 0.99138 0.95531 0.93917 1.19182 0.96002 0.99813 0.95736
1.21548 0.99052 0.95496 0.92715 0.98309 0.96213 0.94336 0.94506
0.91210 0.90036 0.82370 0.84138 0.81892 0.81495 0.82601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.12 9.01 127.77 1.15 9.27 16
2 N -0.60 -27.98 2.91 -731.32 -2.13 -30.10 16
3 C -0.26 -13.34 9.67 84.03 0.81 -12.53 16
4 H 0.08 3.89 7.84 -2.91 -0.02 3.87 16
5 C -0.05 -2.72 5.13 84.86 0.44 -2.29 16
6 N -0.94 -54.63 10.59 21.65 0.23 -54.40 16
7 Si 0.96 44.43 29.57 68.60 2.03 46.46 16
8 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
9 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16
10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16
11 C 0.18 6.52 5.83 85.63 0.50 7.02 16
12 C -0.14 -4.96 5.45 -19.99 -0.11 -5.07 16
13 C 0.15 5.50 10.81 85.07 0.92 6.42 16
14 N -0.50 -19.38 10.34 -188.65 -1.95 -21.33 16
15 C 0.09 3.28 6.60 40.28 0.27 3.55 16
16 C -0.07 -2.21 9.68 22.36 0.22 -1.99 16
17 C -0.08 -1.95 6.18 22.08 0.14 -1.81 16
18 Br -0.03 -0.72 33.65 -20.37 -0.69 -1.40 16
19 C -0.10 -2.27 9.68 22.07 0.21 -2.05 16
20 C -0.08 -1.89 9.77 22.31 0.22 -1.67 16
21 C -0.11 -3.31 5.74 -21.27 -0.12 -3.43 16
22 C -0.06 -1.96 9.54 22.50 0.21 -1.74 16
23 H 0.00 -0.08 7.42 -2.39 -0.02 -0.09 16
24 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16
25 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16
26 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16
27 H 0.07 2.34 7.98 -2.38 -0.02 2.32 16
28 H 0.08 2.43 7.80 -2.38 -0.02 2.41 16
29 H 0.16 5.67 8.06 -2.91 -0.02 5.64 16
30 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16
31 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16
32 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16
33 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16
Total: -1.00 -64.07 306.15 3.46 -60.61
By element:
Atomic # 1 Polarization: 5.36 SS G_CDS: 1.12 Total: 6.48 kcal
Atomic # 6 Polarization: -11.17 SS G_CDS: 4.85 Total: -6.32 kcal
Atomic # 7 Polarization: -101.98 SS G_CDS: -3.85 Total: -105.83 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal
Atomic # 35 Polarization: -0.72 SS G_CDS: -0.69 Total: -1.40 kcal
Total: -64.07 3.46 -60.61 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001248867429.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.690 kcal
(2) G-P(sol) polarization free energy of solvation -64.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.082 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds