Wall clock time and date at job start Tue Mar 31 2020 13:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99330 * 2 1 4 4 H 1.48497 * 109.47499 * 359.97438 * 3 2 1 5 5 H 1.48509 * 109.47092 * 120.00089 * 3 2 1 6 6 H 1.48504 * 109.47063 * 239.99749 * 3 2 1 7 7 C 1.37874 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99763 * 0.02562 * 7 2 1 10 10 O 1.42898 * 112.94646 * 50.33153 * 9 7 2 11 11 C 1.53949 * 113.74246 * 278.74036 * 9 7 2 12 12 N 1.47811 * 86.03727 * 222.08839 * 11 9 7 13 13 C 1.34775 * 134.45814 * 204.64743 * 12 11 9 14 14 O 1.21573 * 120.00582 * 174.29247 * 13 12 11 15 15 C 1.47707 * 119.99926 * 354.29575 * 13 12 11 16 16 C 1.39992 * 119.96354 * 172.79578 * 15 13 12 17 17 C 1.37633 * 120.32089 * 179.70497 * 16 15 13 18 18 C 1.38783 * 120.09660 * 0.57930 * 17 16 15 19 19 O 1.35217 * 133.55956 * 179.73463 * 18 17 16 20 20 C 1.34514 * 108.23645 * 179.97438 * 19 18 17 21 21 S 1.76202 * 124.95375 * 180.02562 * 20 19 18 22 22 N 1.30912 * 110.09943 * 0.02562 * 20 19 18 23 23 C 1.36192 * 108.66645 * 359.97438 * 22 20 19 24 24 C 1.39222 * 133.54358 * 180.02562 * 23 22 20 25 25 C 1.47582 * 91.05382 * 24.54685 * 12 11 9 26 26 H 0.97001 * 120.00945 * 0.02562 * 1 2 3 27 27 H 0.96693 * 113.99768 * 309.66885 * 10 9 7 28 28 H 1.09004 * 113.76824 * 336.34785 * 11 9 7 29 29 H 1.09001 * 113.76788 * 107.74694 * 11 9 7 30 30 H 1.07997 * 119.84311 * 359.97438 * 16 15 13 31 31 H 1.07996 * 119.94820 * 180.27660 * 17 16 15 32 32 H 1.41004 * 100.00050 * 269.98182 * 21 20 19 33 33 H 1.07994 * 120.19753 * 359.95617 * 24 23 22 34 34 H 1.09001 * 113.77376 * 221.15623 * 25 12 11 35 35 H 1.09004 * 113.86914 * 89.76772 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2126 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.2456 -2.5618 -1.0128 11 6 0.7553 -2.9285 1.3933 12 7 1.1915 -4.2895 1.0160 13 6 0.8421 -5.5332 1.4002 14 8 1.3111 -6.4996 0.8309 15 6 -0.1109 -5.7221 2.5128 16 6 -0.5897 -7.0027 2.8135 17 6 -1.4731 -7.1880 3.8525 18 6 -1.9041 -6.1021 4.6016 19 8 -2.7475 -5.9693 5.6501 20 6 -2.7994 -4.6679 5.9864 21 16 -3.7679 -4.0024 7.2993 22 7 -2.0253 -3.9679 5.1961 23 6 -1.4350 -4.8116 4.3048 24 6 -0.5370 -4.6251 3.2574 25 6 2.1610 -3.7400 0.0485 26 1 -0.4851 0.8400 -0.0004 27 1 -0.3465 -1.7975 -1.0271 28 1 1.3260 -2.4964 2.2153 29 1 -0.3224 -2.8320 1.5249 30 1 -0.2610 -7.8501 2.2302 31 1 -1.8352 -8.1793 4.0820 32 1 -4.9636 -3.7253 6.6053 33 1 -0.1730 -3.6355 3.0238 34 1 2.2036 -4.2902 -0.8915 35 1 3.1462 -3.5463 0.4729 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328556959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:13 Heat of formation + Delta-G solvation = 16.401979 kcal Electronic energy + Delta-G solvation = -23953.283804 eV Core-core repulsion = 20239.591525 eV Total energy + Delta-G solvation = -3713.692279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.37535 -39.95619 -38.12716 -36.96197 -34.96254 -34.07394 -32.26941 -31.34698 -30.06169 -28.51735 -25.65850 -25.60852 -24.58592 -23.37925 -22.09039 -20.57498 -19.11181 -18.81975 -18.11373 -17.46710 -17.29111 -16.81926 -16.33465 -15.66058 -15.16098 -14.88436 -14.67914 -14.60592 -14.12668 -13.95353 -13.46657 -13.09495 -12.75783 -12.50194 -12.29470 -12.26303 -12.03824 -11.87473 -11.61564 -11.33632 -11.14892 -11.06340 -10.78127 -10.54882 -10.34937 -9.81093 -9.35029 -9.01250 -8.90856 -8.81125 -8.76146 -8.47834 -7.95665 -6.43051 -4.53933 0.15610 0.42115 0.68900 1.59938 2.25981 2.57421 2.94843 3.15156 3.21416 3.22675 3.34508 3.80689 4.10353 4.16390 4.30680 4.72733 4.81580 4.83957 5.00086 5.08960 5.33170 5.49043 5.74496 5.77242 5.84659 5.98407 6.04106 6.14201 6.26253 6.29416 6.37781 6.51452 6.59657 7.01384 7.11846 7.58938 7.75937 8.29149 8.49355 8.56557 9.17471 9.36475 10.63779 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.003876 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.877931 B = 7222.753517 C = 9061.060777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.242 3.758 10 O -0.571 6.571 11 C 0.066 3.934 12 N -0.624 5.624 13 C 0.573 3.427 14 O -0.556 6.556 15 C -0.122 4.122 16 C -0.025 4.025 17 C -0.111 4.111 18 C 0.043 3.957 19 O -0.198 6.198 20 C 0.200 3.800 21 S 0.030 5.970 22 N -0.402 5.402 23 C 0.000 4.000 24 C -0.019 4.019 25 C 0.114 3.886 26 H 0.274 0.726 27 H 0.392 0.608 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.163 0.837 34 H 0.074 0.926 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 -7.948 11.825 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.090 0.910 9 C 0.200 3.800 10 O -0.383 6.383 11 C -0.056 4.056 12 N -0.356 5.356 13 C 0.363 3.637 14 O -0.437 6.437 15 C -0.126 4.126 16 C -0.044 4.044 17 C -0.130 4.130 18 C -0.011 4.011 19 O -0.089 6.089 20 C -0.121 4.121 21 S 0.182 5.818 22 N -0.133 5.133 23 C -0.114 4.114 24 C -0.038 4.038 25 C -0.007 4.007 26 H 0.085 0.915 27 H 0.247 0.753 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.174 0.826 31 H 0.162 0.838 32 H 0.078 0.922 33 H 0.180 0.820 34 H 0.093 0.907 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.679 -8.097 12.312 16.180 hybrid contribution -0.381 0.551 -0.867 1.095 sum -7.060 -7.546 11.446 15.421 Atomic orbital electron populations 1.69381 1.06186 1.28423 1.49683 1.25061 0.95014 0.99892 0.92925 0.86389 0.79526 0.81614 0.79027 1.20987 1.19817 1.19832 1.21447 0.93947 0.89834 1.52611 0.90959 1.19821 0.85621 0.91307 0.83263 1.86067 1.47096 1.49896 1.55255 1.24587 1.00249 0.77442 1.03341 1.50133 1.39806 1.04493 1.41196 1.17556 0.81529 0.82232 0.82399 1.90726 1.57285 1.39195 1.56515 1.19998 1.00772 0.93513 0.98367 1.21203 0.92201 0.97136 0.93890 1.19812 1.00647 0.96582 0.95931 1.20674 0.93546 0.97487 0.89363 1.84816 1.53815 1.29081 1.41209 1.27267 1.03022 0.80028 1.01780 1.87248 1.13331 1.77130 1.04062 1.71470 1.06886 1.32038 1.02955 1.19806 1.02854 0.89267 0.99506 1.21391 0.91564 1.01128 0.89755 1.23513 0.93215 0.92611 0.91388 0.91537 0.75292 0.89314 0.90594 0.82594 0.83790 0.92155 0.81977 0.90748 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.22 11.20 55.43 0.62 -21.60 16 2 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 3 Si 0.91 19.09 29.54 -169.99 -5.02 14.07 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.54 -13.11 8.61 -34.44 -0.30 -13.41 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 5.58 1.40 -90.84 -0.13 5.46 16 10 O -0.57 -14.29 13.48 -35.23 -0.48 -14.76 16 11 C 0.07 1.36 5.60 -2.84 -0.02 1.35 16 12 N -0.62 -12.76 3.60 -179.26 -0.64 -13.41 16 13 C 0.57 11.40 7.98 -12.39 -0.10 11.30 16 14 O -0.56 -12.20 17.08 5.30 0.09 -12.11 16 15 C -0.12 -2.03 5.87 -104.99 -0.62 -2.65 16 16 C -0.03 -0.35 9.57 -39.15 -0.37 -0.72 16 17 C -0.11 -1.33 10.04 -39.60 -0.40 -1.73 16 18 C 0.04 0.61 7.42 -38.53 -0.29 0.33 16 19 O -0.20 -2.66 10.78 2.55 0.03 -2.63 16 20 C 0.20 2.64 8.59 52.37 0.45 3.09 16 21 S 0.03 0.27 26.28 -107.50 -2.83 -2.55 16 22 N -0.40 -6.36 11.39 -11.47 -0.13 -6.49 16 23 C 0.00 0.01 7.22 -84.72 -0.61 -0.60 16 24 C -0.02 -0.32 9.12 -38.83 -0.35 -0.67 16 25 C 0.11 2.39 8.23 -2.96 -0.02 2.36 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.39 9.91 6.60 45.56 0.30 10.21 16 28 H 0.09 1.74 7.99 -51.93 -0.42 1.33 16 29 H 0.08 1.59 6.90 -51.93 -0.36 1.23 16 30 H 0.16 1.92 7.65 -52.49 -0.40 1.52 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.11 0.76 9.55 96.90 0.93 1.68 16 33 H 0.16 2.80 4.07 -52.49 -0.21 2.58 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -28.47 322.88 -7.31 -35.79 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.97 Total: 13.05 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.85 Total: 5.79 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.15 Total: -41.50 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.36 Total: -29.51 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.83 Total: -2.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.47 -7.31 -35.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328556959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.190 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds