Wall clock time and date at job start Tue Mar 31 2020 13:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99330 * 2 1 4 4 H 1.48497 * 109.47499 * 359.97438 * 3 2 1 5 5 H 1.48509 * 109.47092 * 120.00089 * 3 2 1 6 6 H 1.48504 * 109.47063 * 239.99749 * 3 2 1 7 7 C 1.37874 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99763 * 0.02562 * 7 2 1 10 10 O 1.42898 * 112.94646 * 50.33153 * 9 7 2 11 11 C 1.53949 * 113.74246 * 278.74036 * 9 7 2 12 12 N 1.47811 * 86.03727 * 222.08839 * 11 9 7 13 13 C 1.34775 * 134.45814 * 204.64743 * 12 11 9 14 14 O 1.21573 * 120.00582 * 174.29247 * 13 12 11 15 15 C 1.47707 * 119.99926 * 354.29575 * 13 12 11 16 16 C 1.39992 * 119.96354 * 172.79578 * 15 13 12 17 17 C 1.37633 * 120.32089 * 179.70497 * 16 15 13 18 18 C 1.38783 * 120.09660 * 0.57930 * 17 16 15 19 19 O 1.35217 * 133.55956 * 179.73463 * 18 17 16 20 20 C 1.34514 * 108.23645 * 179.97438 * 19 18 17 21 21 S 1.76202 * 124.95375 * 180.02562 * 20 19 18 22 22 N 1.30912 * 110.09943 * 0.02562 * 20 19 18 23 23 C 1.36192 * 108.66645 * 359.97438 * 22 20 19 24 24 C 1.39222 * 133.54358 * 180.02562 * 23 22 20 25 25 C 1.47582 * 91.05382 * 24.54685 * 12 11 9 26 26 H 0.97001 * 120.00945 * 0.02562 * 1 2 3 27 27 H 0.96693 * 113.99768 * 309.66885 * 10 9 7 28 28 H 1.09004 * 113.76824 * 336.34785 * 11 9 7 29 29 H 1.09001 * 113.76788 * 107.74694 * 11 9 7 30 30 H 1.07997 * 119.84311 * 359.97438 * 16 15 13 31 31 H 1.07996 * 119.94820 * 180.27660 * 17 16 15 32 32 H 1.41004 * 100.00050 * 269.98182 * 21 20 19 33 33 H 1.07994 * 120.19753 * 359.95617 * 24 23 22 34 34 H 1.09001 * 113.77376 * 221.15623 * 25 12 11 35 35 H 1.09004 * 113.86914 * 89.76772 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2126 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.2456 -2.5618 -1.0128 11 6 0.7553 -2.9285 1.3933 12 7 1.1915 -4.2895 1.0160 13 6 0.8421 -5.5332 1.4002 14 8 1.3111 -6.4996 0.8309 15 6 -0.1109 -5.7221 2.5128 16 6 -0.5897 -7.0027 2.8135 17 6 -1.4731 -7.1880 3.8525 18 6 -1.9041 -6.1021 4.6016 19 8 -2.7475 -5.9693 5.6501 20 6 -2.7994 -4.6679 5.9864 21 16 -3.7679 -4.0024 7.2993 22 7 -2.0253 -3.9679 5.1961 23 6 -1.4350 -4.8116 4.3048 24 6 -0.5370 -4.6251 3.2574 25 6 2.1610 -3.7400 0.0485 26 1 -0.4851 0.8400 -0.0004 27 1 -0.3465 -1.7975 -1.0271 28 1 1.3260 -2.4964 2.2153 29 1 -0.3224 -2.8320 1.5249 30 1 -0.2610 -7.8501 2.2302 31 1 -1.8352 -8.1793 4.0820 32 1 -4.9636 -3.7253 6.6053 33 1 -0.1730 -3.6355 3.0238 34 1 2.2036 -4.2902 -0.8915 35 1 3.1462 -3.5463 0.4729 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328556959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:13 Heat of formation + Delta-G solvation = -5.798322 kcal Electronic energy + Delta-G solvation = -23954.246481 eV Core-core repulsion = 20239.591525 eV Total energy + Delta-G solvation = -3714.654956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.45041 -41.52409 -39.58749 -38.40774 -36.07688 -35.88402 -34.16395 -32.60904 -31.18747 -30.15879 -27.36998 -27.25601 -25.78329 -24.57325 -23.21964 -22.14471 -20.63339 -19.82090 -19.53381 -19.10753 -18.37210 -18.10111 -17.67222 -17.18866 -16.71596 -16.46632 -16.11254 -15.81240 -15.52409 -15.14731 -15.06318 -14.43506 -14.41255 -13.97077 -13.75355 -13.55810 -13.42851 -13.19403 -13.12719 -12.79496 -12.75511 -12.26778 -12.24007 -12.23532 -11.89463 -11.47568 -11.09101 -10.66156 -10.27441 -10.19600 -9.84394 -9.63606 -9.61358 -8.27420 -6.44600 -0.84669 -0.52733 -0.49161 0.71363 1.36738 1.48496 1.50199 1.54984 1.57626 1.62518 1.79218 2.40313 2.49245 2.92804 2.98045 3.13134 3.41118 3.68974 3.78200 3.91968 3.94586 4.11237 4.28508 4.38665 4.54236 4.57043 4.71326 4.72262 4.78891 4.86315 4.90207 5.07379 5.19822 5.21704 5.71508 5.90532 6.03189 6.61381 6.67706 6.97376 7.28889 7.41215 8.78468 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.003876 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.877931 B = 7222.753517 C = 9061.060777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.035 3.965 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.221 3.779 10 O -0.585 6.585 11 C 0.085 3.915 12 N -0.628 5.628 13 C 0.570 3.430 14 O -0.580 6.580 15 C -0.134 4.134 16 C -0.026 4.026 17 C -0.084 4.084 18 C 0.039 3.961 19 O -0.193 6.193 20 C 0.209 3.791 21 S 0.050 5.950 22 N -0.441 5.441 23 C -0.018 4.018 24 C -0.032 4.032 25 C 0.116 3.884 26 H 0.275 0.725 27 H 0.387 0.613 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.172 0.828 31 H 0.188 0.812 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.066 0.934 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 -8.688 13.511 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.166 4.166 3 Si 0.792 3.208 4 H -0.210 1.210 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.595 4.595 8 H 0.094 0.906 9 C 0.180 3.820 10 O -0.397 6.397 11 C -0.038 4.038 12 N -0.360 5.360 13 C 0.362 3.638 14 O -0.463 6.463 15 C -0.138 4.138 16 C -0.045 4.045 17 C -0.103 4.103 18 C -0.015 4.015 19 O -0.084 6.084 20 C -0.111 4.111 21 S 0.200 5.800 22 N -0.172 5.172 23 C -0.132 4.132 24 C -0.051 4.051 25 C -0.006 4.006 26 H 0.085 0.915 27 H 0.241 0.759 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.189 0.811 31 H 0.205 0.795 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.085 0.915 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.484 -8.846 13.999 18.173 hybrid contribution -0.254 0.776 -1.298 1.534 sum -7.738 -8.070 12.701 16.921 Atomic orbital electron populations 1.69458 1.07160 1.29003 1.50040 1.25729 0.95702 1.02570 0.92591 0.85470 0.78308 0.78100 0.78958 1.20962 1.19227 1.19866 1.21705 0.94297 0.90614 1.52927 0.90626 1.20116 0.85864 0.92044 0.84022 1.86051 1.47532 1.49703 1.56373 1.24325 0.99810 0.77485 1.02138 1.50122 1.39833 1.04806 1.41194 1.18037 0.81561 0.81458 0.82755 1.90697 1.58360 1.39638 1.57648 1.19822 1.01145 0.95066 0.97809 1.21373 0.92406 0.96132 0.94574 1.20200 0.98468 0.97801 0.93795 1.20951 0.93556 0.97321 0.89702 1.84852 1.53464 1.29270 1.40835 1.28062 1.01916 0.79859 1.01263 1.87247 1.13842 1.76552 1.02314 1.71478 1.08590 1.32938 1.04239 1.19890 1.03132 0.90550 0.99643 1.21166 0.92686 1.00480 0.90780 1.23520 0.93921 0.91595 0.91567 0.91491 0.75860 0.88533 0.91353 0.81082 0.79458 0.89326 0.83508 0.91535 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.93 11.20 21.45 0.24 -45.69 16 2 C 0.04 1.70 5.39 84.65 0.46 2.16 16 3 Si 0.97 38.97 29.54 68.60 2.03 40.99 16 4 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.56 -27.24 8.61 25.60 0.22 -27.02 16 8 H 0.08 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.22 10.40 1.40 -10.88 -0.02 10.38 16 10 O -0.59 -30.11 13.48 -148.98 -2.01 -32.12 16 11 C 0.08 3.58 5.60 86.44 0.48 4.07 16 12 N -0.63 -26.13 3.60 -843.13 -3.03 -29.17 16 13 C 0.57 22.92 7.98 86.75 0.69 23.61 16 14 O -0.58 -25.57 17.08 -3.95 -0.07 -25.64 16 15 C -0.13 -4.46 5.87 -20.10 -0.12 -4.57 16 16 C -0.03 -0.67 9.57 22.55 0.22 -0.45 16 17 C -0.08 -1.77 10.04 22.26 0.22 -1.55 16 18 C 0.04 1.02 7.42 22.95 0.17 1.19 16 19 O -0.19 -4.73 10.78 -13.80 -0.15 -4.88 16 20 C 0.21 5.17 8.59 130.38 1.12 6.29 16 21 S 0.05 0.77 26.28 -56.49 -1.48 -0.72 16 22 N -0.44 -13.71 11.39 -304.39 -3.47 -17.18 16 23 C -0.02 -0.58 7.22 39.25 0.28 -0.29 16 24 C -0.03 -1.07 9.12 22.75 0.21 -0.86 16 25 C 0.12 4.90 8.23 86.49 0.71 5.61 16 26 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 27 H 0.39 20.25 6.60 -74.06 -0.49 19.76 16 28 H 0.10 3.88 7.99 -2.38 -0.02 3.86 16 29 H 0.07 2.97 6.90 -2.39 -0.02 2.96 16 30 H 0.17 3.85 7.65 -2.91 -0.02 3.83 16 31 H 0.19 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.14 1.43 9.55 73.80 0.70 2.13 16 33 H 0.15 5.29 4.07 -2.91 -0.01 5.27 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.11 4.15 8.09 -2.38 -0.02 4.13 16 Total: -1.00 -61.60 322.88 -1.88 -63.48 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 1.41 Total: 32.36 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 4.65 Total: 18.56 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -6.26 Total: -92.04 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -2.23 Total: -62.64 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 40.99 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -1.48 Total: -0.72 kcal Total: -61.60 -1.88 -63.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328556959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.678 kcal (2) G-P(sol) polarization free energy of solvation -61.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds