Wall clock time and date at job start Tue Mar 31 2020 13:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99921 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99671 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99382 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00429 * 0.02562 * 7 2 1 9 9 S 1.76209 * 119.99599 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99875 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46774 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46976 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47312 * 179.97438 * 12 11 10 14 14 C 1.34227 * 116.99869 * 180.02562 * 13 12 11 15 15 O 1.20819 * 120.00075 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99646 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47301 * 179.97438 * 16 14 13 18 18 H 1.08995 * 109.40496 * 305.70387 * 17 16 14 19 19 C 1.49577 * 109.40978 * 65.55474 * 17 16 14 20 20 C 1.30251 * 119.20869 * 138.78551 * 19 17 16 21 21 S 1.77797 * 107.54476 * 359.58509 * 20 19 17 22 22 O 1.42104 * 105.57374 * 230.95091 * 21 20 19 23 23 O 1.42093 * 105.57579 * 100.48335 * 21 20 19 24 24 C 1.54938 * 109.41650 * 185.84516 * 17 16 14 25 25 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47385 * 299.99956 * 10 9 7 27 27 H 1.09005 * 109.47046 * 60.00118 * 10 9 7 28 28 H 1.08996 * 109.47558 * 299.99798 * 11 10 9 29 29 H 1.09001 * 109.47131 * 60.00875 * 11 10 9 30 30 H 1.09004 * 109.47273 * 300.00925 * 12 11 10 31 31 H 1.09005 * 109.46779 * 60.00488 * 12 11 10 32 32 H 1.09003 * 109.47486 * 299.99959 * 16 14 13 33 33 H 1.09004 * 109.47197 * 60.00109 * 16 14 13 34 34 H 1.08000 * 120.42676 * 318.74236 * 19 17 16 35 35 H 1.07999 * 126.23540 * 179.62940 * 20 19 17 36 36 H 1.08997 * 111.33558 * 332.46165 * 24 17 16 37 37 H 1.08997 * 111.33818 * 97.17557 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5479 1.4400 -0.7000 6 1 1.4479 2.6526 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5956 -3.2364 0.0008 12 6 5.8613 -4.7433 0.0012 13 8 7.2935 -4.9823 0.0005 14 6 7.6976 -6.2622 0.0002 15 8 6.8818 -7.1534 0.0010 16 6 9.1691 -6.5877 0.0001 17 6 9.3556 -8.1063 0.0004 18 1 8.8043 -8.5387 0.8354 19 6 8.8365 -8.6712 -1.2837 20 6 9.5078 -9.6144 -1.8806 21 16 10.9528 -9.9469 -0.8995 22 8 12.0485 -9.8899 -1.8026 23 8 10.6485 -11.1199 -0.1574 24 6 10.8612 -8.4404 0.1490 25 1 -0.4850 0.8401 -0.0004 26 1 3.6432 -3.4319 0.8906 27 1 3.6439 -3.4315 -0.8894 28 1 6.0386 -2.7893 -0.8891 29 1 6.0386 -2.7897 0.8909 30 1 5.4183 -5.1901 0.8913 31 1 5.4183 -5.1905 -0.8887 32 1 9.6348 -6.1643 -0.8899 33 1 9.6349 -6.1646 0.8901 34 1 7.9157 -8.3022 -1.7109 35 1 9.2366 -10.1047 -2.8038 36 1 11.4859 -7.6411 -0.2496 37 1 11.1179 -8.6619 1.1849 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341971198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:19 Heat of formation + Delta-G solvation = -170.997352 kcal Electronic energy + Delta-G solvation = -21146.240508 eV Core-core repulsion = 17527.573185 eV Total energy + Delta-G solvation = -3618.667324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70243 -39.01551 -38.13459 -37.48579 -36.95521 -34.94348 -34.69066 -32.74365 -29.91563 -28.14975 -27.52268 -24.79082 -22.85081 -22.27387 -21.19759 -19.87730 -19.62567 -18.70885 -18.13398 -17.94533 -17.60177 -17.11553 -16.99756 -16.50473 -16.11324 -16.07267 -15.41300 -15.21415 -14.94694 -14.44914 -14.28849 -14.02459 -13.72287 -13.63037 -13.41907 -13.31653 -13.12628 -13.10824 -13.04506 -12.60551 -12.55098 -12.39134 -12.25852 -11.83347 -11.73676 -11.65889 -11.50538 -11.26358 -11.17222 -11.12187 -10.61321 -9.01371 -8.52860 -6.25164 -0.89526 0.35506 1.06494 1.15598 1.32808 1.43383 1.50323 1.67976 1.88569 2.24112 2.62101 2.65201 2.85233 3.05089 3.23847 3.31121 3.70120 3.74142 3.83606 3.96376 4.08971 4.14740 4.28155 4.34831 4.47153 4.54429 4.58822 4.64513 4.71722 4.77486 4.81473 4.99539 5.11430 5.15512 5.48483 5.68281 6.09324 6.67178 6.90637 8.60097 Molecular weight = 320.06amu Principal moments of inertia in cm(-1) A = 0.052785 B = 0.001762 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.323652 B =15882.920963 C =16102.797002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.035 3.965 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.226 1.226 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.050 0.950 9 S -0.206 6.206 10 C -0.075 4.075 11 C -0.088 4.088 12 C 0.079 3.921 13 O -0.354 6.354 14 C 0.453 3.547 15 O -0.540 6.540 16 C -0.097 4.097 17 C -0.081 4.081 18 H 0.135 0.865 19 C -0.042 4.042 20 C -0.683 4.683 21 S 2.445 3.555 22 O -0.975 6.975 23 O -0.977 6.977 24 C -0.531 4.531 25 H 0.277 0.723 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.178 0.822 36 H 0.189 0.811 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.115 -14.619 1.083 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.149 1.149 6 H -0.189 1.189 7 C -0.674 4.674 8 H 0.068 0.932 9 S 0.022 5.978 10 C -0.224 4.224 11 C -0.127 4.127 12 C 0.003 3.997 13 O -0.271 6.271 14 C 0.298 3.702 15 O -0.430 6.430 16 C -0.135 4.135 17 C -0.100 4.100 18 H 0.152 0.848 19 C -0.062 4.062 20 C -0.790 4.790 21 S 2.631 3.369 22 O -0.972 6.972 23 O -0.974 6.974 24 C -0.664 4.664 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.162 0.838 33 H 0.179 0.821 34 H 0.149 0.851 35 H 0.196 0.804 36 H 0.207 0.793 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 28.009 -14.688 1.008 31.643 hybrid contribution -2.855 -0.132 -0.379 2.883 sum 25.155 -14.820 0.628 29.203 Atomic orbital electron populations 1.70047 1.07747 1.29169 1.49040 1.25830 0.95457 1.02950 0.92691 0.85686 0.80795 0.78395 0.80300 1.18483 1.14894 1.18911 1.22361 0.90208 0.96277 1.58559 0.93153 1.83789 1.07347 1.09039 1.97590 1.22989 0.99222 0.96062 1.04103 1.21151 0.92570 0.93812 1.05131 1.22977 0.77319 0.96498 1.02910 1.86461 1.27624 1.29481 1.83500 1.24511 0.94175 0.80145 0.71351 1.90711 1.57105 1.48437 1.46794 1.21639 0.87071 0.94132 1.10633 1.20775 0.94485 0.97361 0.97402 0.84764 1.23253 0.98633 0.91672 0.92662 1.32739 1.22312 1.09243 1.14691 1.07111 0.74683 0.78342 0.76746 1.93566 1.52930 1.87908 1.62822 1.93599 1.84549 1.46214 1.73018 1.30610 1.00576 1.17956 1.17285 0.91390 0.91160 0.91235 0.89592 0.89439 0.90885 0.91106 0.83823 0.82097 0.85110 0.80407 0.79325 0.79294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.04 13.97 21.65 0.30 -55.74 16 2 C 0.04 2.04 5.50 84.86 0.47 2.51 16 3 Si 0.93 42.79 27.74 68.60 1.90 44.69 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.23 -9.89 6.74 99.48 0.67 -9.22 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.53 -30.32 10.04 67.95 0.68 -29.64 16 8 H 0.05 3.17 8.03 -2.91 -0.02 3.14 16 9 S -0.21 -9.38 19.41 -56.49 -1.10 -10.48 16 10 C -0.08 -2.64 5.67 71.98 0.41 -2.23 16 11 C -0.09 -2.24 5.60 30.60 0.17 -2.07 16 12 C 0.08 1.72 5.47 71.98 0.39 2.11 16 13 O -0.35 -6.37 10.22 -51.39 -0.53 -6.90 16 14 C 0.45 6.67 7.61 71.24 0.54 7.21 16 15 O -0.54 -11.59 14.16 21.98 0.31 -11.28 16 16 C -0.10 -0.33 5.14 29.85 0.15 -0.17 16 17 C -0.08 -0.40 2.34 -11.23 -0.03 -0.43 16 18 H 0.13 0.70 7.93 -2.39 -0.02 0.68 16 19 C -0.04 -0.47 8.64 26.07 0.23 -0.24 16 20 C -0.68 -8.56 11.04 68.56 0.76 -7.81 16 21 S 2.44 27.13 6.19 -56.49 -0.35 26.78 16 22 O -0.98 -17.99 18.02 -127.81 -2.30 -20.29 16 23 O -0.98 -19.23 18.01 -127.81 -2.30 -21.54 16 24 C -0.53 0.43 7.22 72.64 0.52 0.96 16 25 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 26 H 0.07 2.49 8.14 -2.40 -0.02 2.47 16 27 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.07 1.59 8.13 -2.38 -0.02 1.57 16 32 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.16 -0.52 8.14 -2.38 -0.02 -0.54 16 34 H 0.13 1.82 6.82 -2.91 -0.02 1.80 16 35 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.19 -1.34 7.92 -2.39 -0.02 -1.36 16 37 H 0.19 -1.28 8.14 -2.39 -0.02 -1.30 16 Total: -1.00 -85.38 343.27 1.27 -84.11 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.03 Total: 0.42 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 4.30 Total: -29.80 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.30 Total: -55.74 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -4.82 Total: -60.00 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.90 Total: 44.69 kcal Atomic # 16 Polarization: 17.75 SS G_CDS: -1.45 Total: 16.31 kcal Total: -85.38 1.27 -84.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341971198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.887 kcal (2) G-P(sol) polarization free energy of solvation -85.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds