Wall clock time and date at job start Tue Mar 31 2020 13:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46498 * 120.00272 * 2 1 4 4 C 1.50701 * 109.46923 * 275.58856 * 3 2 1 5 5 H 1.07996 * 119.99989 * 4.71886 * 4 3 2 6 6 C 1.37879 * 119.99725 * 184.71569 * 4 3 2 7 7 N 1.31519 * 120.00278 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99850 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47208 * 90.00225 * 8 6 4 10 10 H 1.48499 * 109.46980 * 209.99965 * 8 6 4 11 11 H 1.48493 * 109.47099 * 330.00000 * 8 6 4 12 12 S 1.65608 * 119.99905 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40258 * 159.58627 * 12 2 1 14 14 O 1.42092 * 106.40124 * 26.66432 * 12 2 1 15 15 N 1.65599 * 107.21747 * 273.12385 * 12 2 1 16 16 C 1.46505 * 119.99970 * 62.80875 * 15 12 2 17 17 C 1.50697 * 109.47342 * 164.47207 * 16 15 12 18 18 N 1.32113 * 120.00866 * 89.99621 * 17 16 15 19 19 C 1.32152 * 120.01657 * 179.97438 * 18 17 16 20 20 C 1.38347 * 120.03100 * 359.97438 * 19 18 17 21 21 N 1.32158 * 120.02130 * 0.02562 * 20 19 18 22 22 C 1.32245 * 119.97816 * 0.02562 * 21 20 19 23 23 Cl 1.73603 * 120.01301 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.47235 * 269.99851 * 1 2 3 25 25 H 1.08997 * 109.47176 * 29.99820 * 1 2 3 26 26 H 1.08999 * 109.47572 * 149.99777 * 1 2 3 27 27 H 1.09002 * 109.47255 * 35.58828 * 3 2 1 28 28 H 1.09006 * 109.47327 * 155.58847 * 3 2 1 29 29 H 0.96996 * 120.00016 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00116 * 242.81021 * 15 12 2 31 31 H 1.09002 * 109.47131 * 44.47029 * 16 15 12 32 32 H 1.08998 * 109.46801 * 284.47374 * 16 15 12 33 33 H 1.07997 * 119.98489 * 180.02562 * 19 18 17 34 34 H 1.07994 * 119.99202 * 179.73922 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3288 1.7728 -1.4141 5 1 1.8439 1.2459 -2.2225 6 6 3.0680 2.9070 -1.6757 7 7 3.6580 3.5490 -0.6912 8 14 3.2302 3.5323 -3.4284 9 1 2.1283 4.4847 -3.7182 10 1 4.5355 4.2220 -3.5891 11 1 3.1559 2.3876 -4.3713 12 16 2.2929 -1.4342 -0.0006 13 8 3.6000 -1.1428 -0.4760 14 8 1.4386 -2.3905 -0.6128 15 7 2.4634 -1.9025 1.5786 16 6 1.2778 -2.1982 2.3870 17 6 1.6895 -2.9510 3.6258 18 7 2.0032 -2.2909 4.7264 19 6 2.3638 -2.9508 5.8131 20 6 2.4125 -4.3334 5.7992 21 7 2.0990 -4.9951 4.6991 22 6 1.7391 -4.3352 3.6110 23 17 1.3264 -5.2036 2.1655 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6554 2.0012 0.5981 28 1 3.1896 1.1154 0.4247 29 1 4.1777 4.3471 -0.8752 30 1 3.3481 -1.9811 1.9684 31 1 0.5843 -2.8062 1.8060 32 1 0.7915 -1.2657 2.6732 33 1 2.6197 -2.4107 6.7126 34 1 2.7113 -4.8719 6.6864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434571125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:50 Heat of formation + Delta-G solvation = -24.903113 kcal Electronic energy + Delta-G solvation = -22631.936127 eV Core-core repulsion = 18946.312627 eV Total energy + Delta-G solvation = -3685.623501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.050 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59650 -37.14623 -36.67297 -35.97501 -35.48383 -35.17709 -34.30843 -32.42874 -31.59372 -27.77501 -27.04085 -25.07292 -24.99367 -23.16035 -22.28439 -19.11117 -18.39810 -17.79499 -17.43642 -16.99251 -16.59816 -16.18026 -15.81749 -15.33394 -14.93507 -14.37758 -14.16432 -13.95446 -13.36135 -13.29216 -13.04233 -12.55565 -12.32583 -12.15257 -12.12714 -11.73802 -11.62648 -11.53987 -11.42087 -11.32233 -11.15439 -11.06170 -10.69582 -10.50637 -10.03894 -9.76507 -9.68656 -9.55962 -9.41311 -8.43653 -8.07559 -6.05512 -4.09798 0.09175 0.52757 1.21682 1.35226 3.03720 3.32297 3.38841 3.44204 3.49082 3.57143 3.78532 3.80533 4.11485 4.45435 4.52589 4.57956 4.72278 4.98713 5.20267 5.29377 5.38115 5.61114 5.68625 5.79581 5.98242 6.28204 6.55681 6.62051 6.97785 7.16627 7.25866 7.40318 7.61970 7.91792 8.21102 8.92755 9.55585 11.03107 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.003649 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.222647 B = 7672.270804 C = 8239.697506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.993 5.993 3 C 0.256 3.744 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.781 3.219 13 O -0.959 6.959 14 O -0.991 6.991 15 N -1.127 6.127 16 C 0.172 3.828 17 C 0.094 3.906 18 N -0.405 5.405 19 C 0.054 3.946 20 C 0.070 3.930 21 N -0.433 5.433 22 C 0.133 3.867 23 Cl 0.005 6.995 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.413 0.587 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.182 0.818 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 -14.247 14.836 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.837 5.837 3 C 0.134 3.866 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.788 3.212 13 O -0.942 6.942 14 O -0.974 6.974 15 N -0.885 5.885 16 C 0.044 3.956 17 C -0.049 4.049 18 N -0.120 5.120 19 C -0.107 4.107 20 C -0.090 4.090 21 N -0.149 5.149 22 C -0.035 4.035 23 Cl 0.034 6.966 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.199 0.801 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.412 -14.613 13.869 20.861 hybrid contribution 0.453 0.494 -0.281 0.726 sum -4.959 -14.119 13.588 20.214 Atomic orbital electron populations 1.21415 0.80188 1.03713 1.00225 1.57597 1.14299 1.23276 1.88490 1.19090 0.91270 0.78578 0.97657 1.21503 1.31826 1.10349 0.93443 0.92104 1.24937 0.94995 0.96546 0.97491 1.69920 1.33197 1.18874 1.31340 0.86512 0.77457 0.78925 0.84657 1.20598 1.21051 1.19697 1.02044 0.73560 0.73001 0.72565 1.93655 1.38636 1.84541 1.77398 1.93532 1.68865 1.61058 1.73968 1.56317 1.13186 1.85952 1.33095 1.20053 0.88363 0.99904 0.87238 1.22016 0.97206 0.89867 0.95772 1.68482 1.06337 1.38832 0.98374 1.24006 0.95766 0.93241 0.97642 1.23879 0.95712 0.93224 0.96210 1.67911 1.08235 1.40191 0.98594 1.22814 0.99149 0.90289 0.91219 1.98476 1.90514 1.77115 1.30528 0.94246 0.90237 0.91461 0.94871 0.93920 0.92677 0.75385 0.88224 0.88930 0.80113 0.80187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.69 59.84 0.64 2.13 16 2 N -0.99 -20.13 3.23 -123.06 -0.40 -20.53 16 3 C 0.26 6.37 5.10 -5.19 -0.03 6.34 16 4 C -0.53 -14.90 9.38 -34.44 -0.32 -15.22 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 S 2.78 54.20 6.09 -107.50 -0.65 53.55 16 13 O -0.96 -22.87 16.99 -57.17 -0.97 -23.84 16 14 O -0.99 -19.82 16.34 -57.17 -0.93 -20.75 16 15 N -1.13 -16.79 6.04 -11.65 -0.07 -16.86 16 16 C 0.17 2.16 6.17 -5.19 -0.03 2.13 16 17 C 0.09 1.11 6.19 -82.37 -0.51 0.60 16 18 N -0.40 -4.42 10.42 -9.26 -0.10 -4.51 16 19 C 0.05 0.40 11.22 -17.37 -0.19 0.21 16 20 C 0.07 0.51 11.22 -17.37 -0.19 0.31 16 21 N -0.43 -4.59 10.49 -10.17 -0.11 -4.69 16 22 C 0.13 1.56 7.28 -17.27 -0.13 1.43 16 23 Cl 0.01 0.06 27.48 -51.86 -1.42 -1.36 16 24 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 25 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 26 H 0.07 1.02 7.05 -51.93 -0.37 0.66 16 27 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 28 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.41 5.69 8.65 -34.47 -0.30 5.40 16 31 H 0.10 1.20 6.56 -51.93 -0.34 0.86 16 32 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 33 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -35.27 328.21 -8.32 -43.59 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.46 Total: -0.54 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.86 Total: -0.39 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: 0.07 Total: -72.02 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.91 Total: -44.59 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.65 Total: 53.55 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.42 Total: -1.36 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.27 -8.32 -43.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434571125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.684 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds