Wall clock time and date at job start Tue Mar 31 2020 13:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46498 * 120.00272 * 2 1 4 4 C 1.50701 * 109.46923 * 275.58856 * 3 2 1 5 5 H 1.07996 * 119.99989 * 4.71886 * 4 3 2 6 6 C 1.37879 * 119.99725 * 184.71569 * 4 3 2 7 7 N 1.31519 * 120.00278 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99850 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47208 * 90.00225 * 8 6 4 10 10 H 1.48499 * 109.46980 * 209.99965 * 8 6 4 11 11 H 1.48493 * 109.47099 * 330.00000 * 8 6 4 12 12 S 1.65608 * 119.99905 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40258 * 159.58627 * 12 2 1 14 14 O 1.42092 * 106.40124 * 26.66432 * 12 2 1 15 15 N 1.65599 * 107.21747 * 273.12385 * 12 2 1 16 16 C 1.46505 * 119.99970 * 62.80875 * 15 12 2 17 17 C 1.50697 * 109.47342 * 164.47207 * 16 15 12 18 18 N 1.32113 * 120.00866 * 89.99621 * 17 16 15 19 19 C 1.32152 * 120.01657 * 179.97438 * 18 17 16 20 20 C 1.38347 * 120.03100 * 359.97438 * 19 18 17 21 21 N 1.32158 * 120.02130 * 0.02562 * 20 19 18 22 22 C 1.32245 * 119.97816 * 0.02562 * 21 20 19 23 23 Cl 1.73603 * 120.01301 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.47235 * 269.99851 * 1 2 3 25 25 H 1.08997 * 109.47176 * 29.99820 * 1 2 3 26 26 H 1.08999 * 109.47572 * 149.99777 * 1 2 3 27 27 H 1.09002 * 109.47255 * 35.58828 * 3 2 1 28 28 H 1.09006 * 109.47327 * 155.58847 * 3 2 1 29 29 H 0.96996 * 120.00016 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00116 * 242.81021 * 15 12 2 31 31 H 1.09002 * 109.47131 * 44.47029 * 16 15 12 32 32 H 1.08998 * 109.46801 * 284.47374 * 16 15 12 33 33 H 1.07997 * 119.98489 * 180.02562 * 19 18 17 34 34 H 1.07994 * 119.99202 * 179.73922 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3288 1.7728 -1.4141 5 1 1.8439 1.2459 -2.2225 6 6 3.0680 2.9070 -1.6757 7 7 3.6580 3.5490 -0.6912 8 14 3.2302 3.5323 -3.4284 9 1 2.1283 4.4847 -3.7182 10 1 4.5355 4.2220 -3.5891 11 1 3.1559 2.3876 -4.3713 12 16 2.2929 -1.4342 -0.0006 13 8 3.6000 -1.1428 -0.4760 14 8 1.4386 -2.3905 -0.6128 15 7 2.4634 -1.9025 1.5786 16 6 1.2778 -2.1982 2.3870 17 6 1.6895 -2.9510 3.6258 18 7 2.0032 -2.2909 4.7264 19 6 2.3638 -2.9508 5.8131 20 6 2.4125 -4.3334 5.7992 21 7 2.0990 -4.9951 4.6991 22 6 1.7391 -4.3352 3.6110 23 17 1.3264 -5.2036 2.1655 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6554 2.0012 0.5981 28 1 3.1896 1.1154 0.4247 29 1 4.1777 4.3471 -0.8752 30 1 3.3481 -1.9811 1.9684 31 1 0.5843 -2.8062 1.8060 32 1 0.7915 -1.2657 2.6732 33 1 2.6197 -2.4107 6.7126 34 1 2.7113 -4.8719 6.6864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434571125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:50 Heat of formation + Delta-G solvation = -54.096084 kcal Electronic energy + Delta-G solvation = -22633.202030 eV Core-core repulsion = 18946.312627 eV Total energy + Delta-G solvation = -3686.889403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.32026 -38.32452 -37.97908 -37.24494 -36.94825 -36.86121 -35.14747 -34.49129 -32.42731 -29.64739 -27.95506 -26.75611 -25.72596 -24.21274 -23.97871 -20.54340 -19.19625 -19.02590 -18.61822 -18.41450 -18.26959 -17.66498 -16.95630 -16.54137 -16.24409 -15.81216 -15.23087 -15.00778 -14.92046 -14.72039 -14.07654 -13.98241 -13.86312 -13.38835 -13.33254 -13.14344 -13.05794 -13.01682 -12.90883 -12.87012 -12.48613 -12.42948 -12.33324 -12.21160 -11.96580 -11.74126 -10.73378 -10.57357 -10.31848 -10.29936 -9.77563 -8.19399 -6.31441 -0.69208 -0.32650 -0.11590 0.54604 1.39828 1.42357 1.52734 1.97885 2.38697 2.44118 2.64162 2.75962 3.06699 3.11869 3.15301 3.47840 3.76333 3.89433 4.10760 4.23168 4.33635 4.45549 4.60292 4.76933 4.86278 5.10708 5.11736 5.22400 5.44722 5.71118 5.79160 5.94393 6.01471 6.12038 6.47179 6.77435 7.37653 8.88279 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.003649 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.222647 B = 7672.270804 C = 8239.697506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.000 6.000 3 C 0.271 3.729 4 C -0.552 4.552 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.274 1.274 12 S 2.800 3.200 13 O -1.008 7.008 14 O -0.998 6.998 15 N -1.115 6.115 16 C 0.167 3.833 17 C 0.080 3.920 18 N -0.428 5.428 19 C 0.065 3.935 20 C 0.086 3.914 21 N -0.454 5.454 22 C 0.119 3.881 23 Cl -0.013 7.013 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.018 0.982 29 H 0.267 0.733 30 H 0.419 0.581 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.223 0.777 34 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 -14.627 16.564 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.842 5.842 3 C 0.147 3.853 4 C -0.592 4.592 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.199 1.199 12 S 2.807 3.193 13 O -0.992 6.992 14 O -0.981 6.981 15 N -0.876 5.876 16 C 0.040 3.960 17 C -0.061 4.061 18 N -0.144 5.144 19 C -0.097 4.097 20 C -0.075 4.075 21 N -0.171 5.171 22 C -0.047 4.047 23 Cl 0.016 6.984 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.254 0.746 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.240 0.760 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.935 -15.002 15.559 22.414 hybrid contribution 0.599 0.525 -0.572 0.980 sum -5.336 -14.478 14.988 21.511 Atomic orbital electron populations 1.21684 0.77854 1.03941 1.02781 1.57457 1.15875 1.21776 1.89120 1.18637 0.90558 0.80193 0.95906 1.21874 1.31889 1.10648 0.94759 0.92733 1.25758 0.94724 0.96838 1.01451 1.70012 1.33791 1.19347 1.33198 0.85584 0.78017 0.78465 0.79832 1.18920 1.20480 1.19868 1.01231 0.72232 0.72620 0.73194 1.93583 1.41164 1.85205 1.79227 1.93517 1.68761 1.60912 1.74899 1.55830 1.14537 1.85314 1.31953 1.20212 0.87258 1.00789 0.87711 1.21692 0.98950 0.89659 0.95841 1.68476 1.07163 1.39654 0.99067 1.24760 0.93474 0.93745 0.97699 1.24694 0.93032 0.93535 0.96249 1.67942 1.09032 1.40897 0.99214 1.22739 1.00410 0.90158 0.91376 1.98461 1.90808 1.77416 1.31758 0.90548 0.90911 0.90327 0.95209 0.96400 0.92388 0.74643 0.87931 0.87869 0.76025 0.75732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 10.69 127.77 1.37 3.98 16 2 N -1.00 -40.68 3.23 -543.24 -1.75 -42.43 16 3 C 0.27 13.74 5.10 85.63 0.44 14.17 16 4 C -0.55 -31.40 9.38 25.60 0.24 -31.16 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.68 5.46 84.65 0.46 1.14 16 7 N -0.92 -54.58 13.29 21.45 0.28 -54.29 16 8 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 9 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 12 S 2.80 110.37 6.09 -56.49 -0.34 110.03 16 13 O -1.01 -49.57 16.99 -128.00 -2.17 -51.74 16 14 O -1.00 -39.87 16.34 -128.00 -2.09 -41.96 16 15 N -1.11 -33.14 6.04 -190.78 -1.15 -34.29 16 16 C 0.17 4.07 6.17 85.63 0.53 4.60 16 17 C 0.08 1.78 6.19 42.58 0.26 2.04 16 18 N -0.43 -8.41 10.42 -183.20 -1.91 -10.32 16 19 C 0.06 0.73 11.22 84.67 0.95 1.68 16 20 C 0.09 0.92 11.22 84.67 0.95 1.87 16 21 N -0.45 -8.70 10.49 -186.09 -1.95 -10.65 16 22 C 0.12 2.67 7.28 84.70 0.62 3.29 16 23 Cl -0.01 -0.31 27.48 -2.72 -0.07 -0.39 16 24 H 0.08 1.84 8.05 -2.38 -0.02 1.82 16 25 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 26 H 0.08 2.30 7.05 -2.39 -0.02 2.29 16 27 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 28 H 0.02 0.99 7.50 -2.38 -0.02 0.98 16 29 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.42 11.64 8.65 -96.75 -0.84 10.80 16 31 H 0.10 2.41 6.56 -2.39 -0.02 2.40 16 32 H 0.10 2.26 8.05 -2.39 -0.02 2.24 16 33 H 0.22 0.50 8.06 -2.91 -0.02 0.48 16 34 H 0.23 0.21 8.06 -2.91 -0.02 0.19 16 Total: -1.00 -77.48 328.21 -3.01 -80.49 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.32 Total: 7.09 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.81 Total: 1.61 kcal Atomic # 7 Polarization: -145.51 SS G_CDS: -6.48 Total: -151.99 kcal Atomic # 8 Polarization: -89.44 SS G_CDS: -4.27 Total: -93.70 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 110.37 SS G_CDS: -0.34 Total: 110.03 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.07 Total: -0.39 kcal Total: -77.48 -3.01 -80.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434571125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.395 kcal (2) G-P(sol) polarization free energy of solvation -77.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds