Wall clock time and date at job start Tue Mar 31 2020 13:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00124 * 2 1 4 4 H 1.48502 * 109.46941 * 269.99687 * 3 2 1 5 5 H 1.48498 * 109.47083 * 29.99151 * 3 2 1 6 6 H 1.48496 * 109.47357 * 149.99656 * 3 2 1 7 7 C 1.37874 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00401 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00212 * 180.02562 * 7 2 1 10 10 S 1.81396 * 109.47386 * 180.02562 * 9 7 2 11 11 C 1.81399 * 102.99889 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46970 * 179.97438 * 11 10 9 13 13 N 1.32442 * 118.53677 * 90.00273 * 12 11 10 14 14 C 1.32310 * 121.53456 * 180.02562 * 13 12 11 15 15 O 1.35288 * 120.87235 * 180.02562 * 14 13 12 16 16 C 1.41590 * 118.25783 * 359.97438 * 14 13 12 17 17 C 1.40086 * 121.89390 * 180.02562 * 16 14 13 18 18 C 1.36061 * 119.86968 * 179.97438 * 17 16 14 19 19 C 1.40457 * 120.78186 * 0.02642 * 18 17 16 20 20 C 1.47878 * 119.72607 * 179.97438 * 19 18 17 21 21 O 1.21460 * 120.00148 * 180.02562 * 20 19 18 22 22 O 1.34697 * 120.00255 * 0.02562 * 20 19 18 23 23 C 1.38605 * 120.55084 * 359.97438 * 19 18 17 24 24 C 1.40119 * 119.36235 * 359.97438 * 23 19 18 25 25 N 1.31109 * 118.53841 * 270.01756 * 12 11 10 26 26 H 0.96997 * 120.00561 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47613 * 59.99561 * 9 7 2 28 28 H 1.09008 * 109.46607 * 300.00027 * 9 7 2 29 29 H 1.08997 * 109.47474 * 60.00011 * 11 10 9 30 30 H 1.09005 * 109.47438 * 299.99343 * 11 10 9 31 31 H 0.96702 * 113.99293 * 269.97452 * 15 14 13 32 32 H 1.07999 * 120.06406 * 359.97387 * 17 16 14 33 33 H 1.08002 * 119.60873 * 179.97438 * 18 17 16 34 34 H 0.96698 * 116.99973 * 180.02562 * 22 20 19 35 35 H 1.08003 * 120.31994 * 179.70805 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1162 -2.9043 0.0010 11 6 5.9186 -2.6998 0.0009 12 6 6.5779 -4.0550 0.0014 13 7 6.8547 -4.6243 -1.1619 14 6 7.4323 -5.8127 -1.2306 15 8 7.7096 -6.3817 -2.4263 16 6 7.7536 -6.4729 -0.0200 17 6 8.3664 -7.7325 -0.0039 18 6 8.6575 -8.3293 1.1837 19 6 8.3503 -7.6977 2.4000 20 6 8.6765 -8.3679 3.6772 21 8 8.4127 -7.8264 4.7319 22 8 9.2663 -9.5788 3.6710 23 6 7.7440 -6.4513 2.4132 24 6 7.4387 -5.8229 1.1986 25 7 6.8516 -4.6179 1.1534 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8911 28 1 3.8751 -0.6804 -0.8889 29 1 6.2218 -2.1484 0.8909 30 1 6.2217 -2.1483 -0.8891 31 1 6.9957 -6.9335 -2.7741 32 1 8.6074 -8.2289 -0.9323 33 1 9.1296 -9.3007 1.1912 34 1 9.4598 -9.9773 4.5305 35 1 7.5051 -5.9711 3.3506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:53 Heat of formation + Delta-G solvation = -58.690333 kcal Electronic energy + Delta-G solvation = -22556.435988 eV Core-core repulsion = 18839.487462 eV Total energy + Delta-G solvation = -3716.948526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89934 -40.62171 -38.30126 -37.95363 -36.58159 -33.61621 -33.06297 -32.52635 -31.37730 -29.42336 -28.58718 -26.27744 -23.72114 -23.22886 -22.41909 -22.10679 -19.57980 -19.06521 -18.49145 -18.08217 -17.00710 -16.92065 -16.42492 -16.11971 -15.92163 -15.38557 -14.68693 -14.66683 -14.21212 -14.12802 -13.90938 -13.48535 -13.34681 -13.28109 -12.82663 -12.59684 -12.35240 -12.19104 -12.12961 -11.98851 -11.19710 -11.18647 -10.97331 -10.82565 -10.56485 -10.16144 -9.80016 -9.65174 -9.59141 -9.08184 -8.73123 -8.69389 -6.86170 -6.19534 -4.22325 -0.44620 -0.01626 1.24440 1.69323 2.21427 2.38386 2.82468 2.88588 3.21171 3.28446 3.29581 3.48597 3.67032 3.67798 3.87192 4.11271 4.29848 4.33031 4.37742 4.53069 4.78791 4.90451 5.11732 5.16355 5.30207 5.48196 5.56249 5.61620 5.64971 5.89185 5.96041 6.01892 6.54385 6.63745 6.66082 6.92668 7.36406 7.39166 7.80971 8.27811 8.82363 9.35496 10.92450 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.002684 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.564885 B =10428.245045 C =11393.210021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.084 0.916 9 C 0.046 3.954 10 S -0.233 6.233 11 C -0.046 4.046 12 C 0.384 3.616 13 N -0.517 5.517 14 C 0.407 3.593 15 O -0.467 6.467 16 C -0.160 4.160 17 C -0.072 4.072 18 C -0.087 4.087 19 C -0.087 4.087 20 C 0.528 3.472 21 O -0.502 6.502 22 O -0.509 6.509 23 C -0.020 4.020 24 C 0.165 3.835 25 N -0.488 5.488 26 H 0.268 0.732 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.415 0.585 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.418 0.582 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.627 -19.411 1.003 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.124 4.124 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.102 0.898 9 C -0.101 4.101 10 S -0.007 6.007 11 C -0.195 4.195 12 C 0.115 3.885 13 N -0.242 5.242 14 C 0.205 3.795 15 O -0.276 6.276 16 C -0.166 4.166 17 C -0.092 4.092 18 C -0.106 4.106 19 C -0.092 4.092 20 C 0.371 3.629 21 O -0.390 6.390 22 O -0.321 6.321 23 C -0.039 4.039 24 C 0.037 3.963 25 N -0.204 5.204 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.276 0.724 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.277 0.723 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 20.818 -18.721 1.074 28.018 hybrid contribution 1.126 0.719 0.322 1.374 sum 21.944 -18.002 1.396 28.418 Atomic orbital electron populations 1.69855 1.06166 1.27363 1.49389 1.24838 0.94758 0.98723 0.94071 0.86802 0.80359 0.83517 0.78844 1.19830 1.20779 1.18948 1.20424 0.86740 0.95348 1.52889 0.89828 1.21499 1.01146 0.88027 0.99464 1.86991 0.96494 1.19281 1.97947 1.22101 0.98845 0.91782 1.06784 1.22076 0.89646 0.95026 0.81737 1.67721 1.13803 1.11352 1.31298 1.19587 0.87459 0.87585 0.84888 1.84610 1.43895 1.66545 1.32533 1.19786 1.04511 0.97926 0.94417 1.20802 0.96346 0.92803 0.99253 1.21079 0.98467 1.00533 0.90490 1.19049 1.03553 0.95173 0.91402 1.20742 0.74018 0.79086 0.89079 1.90946 1.49868 1.65053 1.33114 1.84522 1.73242 1.33079 1.41300 1.21205 0.92695 0.92055 0.97983 1.18670 0.94796 0.90738 0.92049 1.68630 1.13501 1.09036 1.29201 0.92158 0.94300 0.94783 0.87532 0.87630 0.72414 0.83513 0.83476 0.72274 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -14.65 9.68 -34.44 -0.33 -14.98 16 8 H 0.08 2.62 7.96 -52.49 -0.42 2.20 16 9 C 0.05 1.11 4.77 36.01 0.17 1.28 16 10 S -0.23 -4.98 21.64 -107.50 -2.33 -7.31 16 11 C -0.05 -0.78 6.34 36.01 0.23 -0.55 16 12 C 0.38 6.20 6.88 -157.22 -1.08 5.11 16 13 N -0.52 -7.81 10.30 -10.38 -0.11 -7.92 16 14 C 0.41 4.83 7.89 -16.07 -0.13 4.70 16 15 O -0.47 -3.96 12.91 -17.56 -0.23 -4.19 16 16 C -0.16 -1.76 5.76 -106.62 -0.61 -2.37 16 17 C -0.07 -0.54 9.58 -39.67 -0.38 -0.92 16 18 C -0.09 -0.61 9.52 -39.53 -0.38 -0.99 16 19 C -0.09 -0.80 5.87 -104.98 -0.62 -1.41 16 20 C 0.53 4.63 8.27 34.68 0.29 4.92 16 21 O -0.50 -6.00 17.09 -19.24 -0.33 -6.33 16 22 O -0.51 -2.67 12.64 -40.48 -0.51 -3.18 16 23 C -0.02 -0.23 9.58 -38.74 -0.37 -0.60 16 24 C 0.17 2.16 6.61 -84.86 -0.56 1.60 16 25 N -0.49 -7.65 10.32 -8.81 -0.09 -7.74 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.04 0.91 7.20 -51.92 -0.37 0.53 16 28 H 0.03 0.78 7.57 -51.92 -0.39 0.39 16 29 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.11 1.65 8.14 -51.92 -0.42 1.22 16 31 H 0.41 1.43 9.06 45.56 0.41 1.84 16 32 H 0.15 0.68 7.70 -52.49 -0.40 0.27 16 33 H 0.15 0.67 7.57 -52.49 -0.40 0.27 16 34 H 0.42 0.40 9.11 45.56 0.42 0.82 16 35 H 0.16 1.85 7.62 -52.48 -0.40 1.45 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -36.00 331.66 -7.93 -43.93 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -1.57 Total: -0.35 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -3.87 Total: -2.00 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.58 Total: -41.73 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.07 Total: -13.70 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.33 Total: -7.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.00 -7.93 -43.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.764 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds