Wall clock time and date at job start Tue Mar 31 2020 13:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00124 * 2 1 4 4 H 1.48502 * 109.46941 * 269.99687 * 3 2 1 5 5 H 1.48498 * 109.47083 * 29.99151 * 3 2 1 6 6 H 1.48496 * 109.47357 * 149.99656 * 3 2 1 7 7 C 1.37874 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00401 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00212 * 180.02562 * 7 2 1 10 10 S 1.81396 * 109.47386 * 180.02562 * 9 7 2 11 11 C 1.81399 * 102.99889 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46970 * 179.97438 * 11 10 9 13 13 N 1.32442 * 118.53677 * 90.00273 * 12 11 10 14 14 C 1.32310 * 121.53456 * 180.02562 * 13 12 11 15 15 O 1.35288 * 120.87235 * 180.02562 * 14 13 12 16 16 C 1.41590 * 118.25783 * 359.97438 * 14 13 12 17 17 C 1.40086 * 121.89390 * 180.02562 * 16 14 13 18 18 C 1.36061 * 119.86968 * 179.97438 * 17 16 14 19 19 C 1.40457 * 120.78186 * 0.02642 * 18 17 16 20 20 C 1.47878 * 119.72607 * 179.97438 * 19 18 17 21 21 O 1.21460 * 120.00148 * 180.02562 * 20 19 18 22 22 O 1.34697 * 120.00255 * 0.02562 * 20 19 18 23 23 C 1.38605 * 120.55084 * 359.97438 * 19 18 17 24 24 C 1.40119 * 119.36235 * 359.97438 * 23 19 18 25 25 N 1.31109 * 118.53841 * 270.01756 * 12 11 10 26 26 H 0.96997 * 120.00561 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47613 * 59.99561 * 9 7 2 28 28 H 1.09008 * 109.46607 * 300.00027 * 9 7 2 29 29 H 1.08997 * 109.47474 * 60.00011 * 11 10 9 30 30 H 1.09005 * 109.47438 * 299.99343 * 11 10 9 31 31 H 0.96702 * 113.99293 * 269.97452 * 15 14 13 32 32 H 1.07999 * 120.06406 * 359.97387 * 17 16 14 33 33 H 1.08002 * 119.60873 * 179.97438 * 18 17 16 34 34 H 0.96698 * 116.99973 * 180.02562 * 22 20 19 35 35 H 1.08003 * 120.31994 * 179.70805 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1162 -2.9043 0.0010 11 6 5.9186 -2.6998 0.0009 12 6 6.5779 -4.0550 0.0014 13 7 6.8547 -4.6243 -1.1619 14 6 7.4323 -5.8127 -1.2306 15 8 7.7096 -6.3817 -2.4263 16 6 7.7536 -6.4729 -0.0200 17 6 8.3664 -7.7325 -0.0039 18 6 8.6575 -8.3293 1.1837 19 6 8.3503 -7.6977 2.4000 20 6 8.6765 -8.3679 3.6772 21 8 8.4127 -7.8264 4.7319 22 8 9.2663 -9.5788 3.6710 23 6 7.7440 -6.4513 2.4132 24 6 7.4387 -5.8229 1.1986 25 7 6.8516 -4.6179 1.1534 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8911 28 1 3.8751 -0.6804 -0.8889 29 1 6.2218 -2.1484 0.8909 30 1 6.2217 -2.1483 -0.8891 31 1 6.9957 -6.9335 -2.7741 32 1 8.6074 -8.2289 -0.9323 33 1 9.1296 -9.3007 1.1912 34 1 9.4598 -9.9773 4.5305 35 1 7.5051 -5.9711 3.3506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:52 Heat of formation + Delta-G solvation = -88.105811 kcal Electronic energy + Delta-G solvation = -22557.711539 eV Core-core repulsion = 18839.487462 eV Total energy + Delta-G solvation = -3718.224077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.78150 -41.32541 -39.03846 -38.78352 -37.19674 -35.21338 -34.51521 -33.43210 -32.25814 -31.47217 -29.65228 -27.07470 -25.01671 -24.22706 -23.96021 -22.82109 -20.38224 -19.94712 -19.19605 -19.09364 -18.77759 -17.72697 -17.43895 -17.30620 -16.78311 -16.42162 -16.17753 -15.62137 -15.36762 -15.13810 -14.93682 -14.87970 -14.81486 -14.27096 -14.10118 -13.90895 -13.57283 -13.40762 -12.91847 -12.66909 -12.64412 -12.29272 -12.18739 -12.06337 -11.93428 -11.77603 -11.72434 -10.90653 -10.84767 -10.58026 -10.56398 -9.54707 -8.56931 -8.37503 -6.47806 -1.26662 -0.90324 0.40213 0.63474 1.16611 1.35723 1.37730 1.48380 1.75970 1.82133 1.95397 2.06763 2.30095 2.61400 2.74660 2.95687 3.00389 3.32583 3.56369 3.70082 3.81312 3.97673 4.02374 4.26037 4.36596 4.56312 4.60764 4.62730 4.75147 4.92452 4.94566 5.01888 5.31415 5.33371 5.46963 5.72797 6.06042 6.38211 6.55645 6.80773 6.85466 7.14525 8.78431 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.002684 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.564885 B =10428.245045 C =11393.210021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.020 3.980 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.243 1.243 7 C -0.531 4.531 8 H 0.035 0.965 9 C 0.051 3.949 10 S -0.272 6.272 11 C -0.026 4.026 12 C 0.364 3.636 13 N -0.548 5.548 14 C 0.418 3.582 15 O -0.461 6.461 16 C -0.162 4.162 17 C -0.056 4.056 18 C -0.069 4.069 19 C -0.079 4.079 20 C 0.536 3.464 21 O -0.540 6.540 22 O -0.492 6.492 23 C -0.044 4.044 24 C 0.139 3.861 25 N -0.514 5.514 26 H 0.273 0.727 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.437 0.563 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.439 0.561 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.083 -21.172 0.158 32.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.180 4.180 3 Si 0.776 3.224 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.166 1.166 7 C -0.569 4.569 8 H 0.053 0.947 9 C -0.097 4.097 10 S -0.046 6.046 11 C -0.175 4.175 12 C 0.095 3.905 13 N -0.274 5.274 14 C 0.216 3.784 15 O -0.273 6.273 16 C -0.168 4.168 17 C -0.076 4.076 18 C -0.087 4.087 19 C -0.083 4.083 20 C 0.380 3.620 21 O -0.431 6.431 22 O -0.306 6.306 23 C -0.063 4.063 24 C 0.013 3.987 25 N -0.230 5.230 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.303 0.697 32 H 0.204 0.796 33 H 0.203 0.797 34 H 0.302 0.698 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 24.288 -20.559 0.224 31.822 hybrid contribution 0.179 0.888 0.592 1.082 sum 24.466 -19.671 0.815 31.404 Atomic orbital electron populations 1.70013 1.08320 1.28832 1.50706 1.25893 0.95683 1.03228 0.93180 0.85611 0.79534 0.77562 0.79734 1.18422 1.20298 1.16649 1.20617 0.89322 0.93843 1.53147 0.94717 1.21277 0.98191 0.89966 1.00232 1.87003 1.01662 1.17816 1.98083 1.22009 0.94425 0.93298 1.07797 1.21732 0.91290 0.95036 0.82467 1.67658 1.15761 1.13158 1.30864 1.19738 0.85786 0.86778 0.86142 1.84583 1.44866 1.66681 1.31123 1.19965 1.04533 0.99139 0.93162 1.21241 0.94278 0.90984 1.01122 1.21498 0.96732 1.01367 0.89079 1.19237 1.02068 0.94224 0.92797 1.20648 0.73434 0.79652 0.88236 1.90947 1.51560 1.66248 1.34378 1.84464 1.71969 1.31133 1.43022 1.21107 0.94735 0.93451 0.97008 1.18901 0.95734 0.90475 0.93550 1.68514 1.14470 1.10666 1.29384 0.91773 0.93452 0.93378 0.86714 0.86389 0.69696 0.79574 0.79713 0.69800 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 13.96 21.44 0.30 -58.33 16 2 C 0.02 1.18 5.47 84.65 0.46 1.64 16 3 Si 0.95 42.85 27.47 68.60 1.88 44.74 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 7 C -0.53 -31.38 9.68 25.60 0.25 -31.13 16 8 H 0.03 2.32 7.96 -2.91 -0.02 2.30 16 9 C 0.05 2.48 4.77 71.24 0.34 2.82 16 10 S -0.27 -11.97 21.64 -56.49 -1.22 -13.19 16 11 C -0.03 -0.89 6.34 71.24 0.45 -0.44 16 12 C 0.36 11.91 6.88 138.76 0.96 12.87 16 13 N -0.55 -16.33 10.30 -299.80 -3.09 -19.41 16 14 C 0.42 9.16 7.89 85.45 0.67 9.84 16 15 O -0.46 -6.35 12.91 -85.74 -1.11 -7.46 16 16 C -0.16 -3.23 5.76 -21.16 -0.12 -3.35 16 17 C -0.06 -0.60 9.58 22.21 0.21 -0.38 16 18 C -0.07 -0.66 9.52 22.30 0.21 -0.45 16 19 C -0.08 -1.27 5.87 -20.10 -0.12 -1.39 16 20 C 0.54 8.29 8.27 70.38 0.58 8.87 16 21 O -0.54 -12.64 17.09 19.97 0.34 -12.29 16 22 O -0.49 -3.31 12.64 -56.07 -0.71 -4.02 16 23 C -0.04 -0.99 9.58 22.81 0.22 -0.77 16 24 C 0.14 3.64 6.61 40.09 0.26 3.90 16 25 N -0.51 -16.58 10.32 -181.78 -1.88 -18.45 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.05 2.19 7.20 -2.39 -0.02 2.17 16 28 H 0.05 2.17 7.57 -2.39 -0.02 2.15 16 29 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 30 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.44 1.50 9.06 -74.06 -0.67 0.83 16 32 H 0.19 0.55 7.70 -2.91 -0.02 0.53 16 33 H 0.19 0.48 7.57 -2.91 -0.02 0.46 16 34 H 0.44 -0.71 9.11 -74.06 -0.67 -1.38 16 35 H 0.15 3.62 7.62 -2.91 -0.02 3.60 16 Total: -1.00 -83.49 331.66 -1.31 -84.80 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -0.22 Total: 1.59 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 4.38 Total: 2.02 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.66 Total: -96.19 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -1.47 Total: -23.77 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 16 Polarization: -11.97 SS G_CDS: -1.22 Total: -13.19 kcal Total: -83.49 -1.31 -84.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.302 kcal (2) G-P(sol) polarization free energy of solvation -83.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds