Wall clock time and date at job start Tue Mar 31 2020 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00023 * 2 1 4 4 H 1.48495 * 109.46937 * 239.99651 * 3 2 1 5 5 H 1.48496 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47063 * 119.99639 * 3 2 1 7 7 C 1.38958 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00000 * 157.79956 * 7 2 1 9 9 N 1.37095 * 119.99652 * 337.79556 * 7 2 1 10 10 C 1.46510 * 120.00190 * 325.01324 * 9 7 2 11 11 C 1.52993 * 109.46649 * 269.72327 * 10 9 7 12 12 C 1.50704 * 109.47095 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99563 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00620 * 180.02562 * 12 11 10 15 15 C 1.34777 * 120.00053 * 144.73413 * 9 7 2 16 16 O 1.21292 * 120.00081 * 174.63936 * 15 9 7 17 17 C 1.50702 * 119.99539 * 354.64591 * 15 9 7 18 18 F 1.39900 * 109.47269 * 321.11524 * 17 15 9 19 19 F 1.39893 * 109.47489 * 81.12549 * 17 15 9 20 20 C 1.50704 * 109.46728 * 201.12365 * 17 15 9 21 21 N 1.29031 * 124.91517 * 299.69352 * 20 17 15 22 22 C 1.31780 * 117.12610 * 179.81632 * 21 20 17 23 23 C 1.33647 * 114.49783 * 0.47084 * 22 21 20 24 24 S 1.70971 * 124.91851 * 119.99886 * 20 17 15 25 25 H 0.97000 * 119.99889 * 5.45959 * 1 2 3 26 26 H 1.08996 * 109.46999 * 29.72484 * 10 9 7 27 27 H 1.09002 * 109.46842 * 149.72603 * 10 9 7 28 28 H 1.08996 * 109.47548 * 299.99821 * 11 10 9 29 29 H 1.09007 * 109.47690 * 60.00295 * 11 10 9 30 30 H 0.96693 * 117.00127 * 180.02562 * 14 12 11 31 31 H 1.07996 * 122.75115 * 180.22306 * 22 21 20 32 32 H 1.08000 * 126.03734 * 179.72062 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0288 -1.2382 -0.3528 9 7 1.3997 -2.3464 0.4498 10 6 0.4453 -2.2803 1.5595 11 6 1.1888 -2.4693 2.8832 12 6 0.2071 -2.4020 4.0247 13 8 -0.9666 -2.2208 3.8022 14 8 0.6367 -2.5422 5.2886 15 6 1.6743 -3.5302 -0.1331 16 8 1.2117 -4.5536 0.3249 17 6 2.5564 -3.5822 -1.3539 18 9 2.2688 -2.4933 -2.1839 19 9 3.8984 -3.5285 -0.9623 20 6 2.3026 -4.8652 -2.1027 21 7 2.4773 -6.0490 -1.6199 22 6 2.2034 -7.0668 -2.4108 23 6 1.7832 -6.7225 -3.6319 24 16 1.7487 -4.9629 -3.7172 25 1 -0.4850 0.8362 -0.0799 26 1 -0.0492 -1.3090 1.5559 27 1 -0.2996 -3.0678 1.4454 28 1 1.6833 -3.4406 2.8867 29 1 1.9338 -1.6818 2.9973 30 1 -0.0301 -2.4920 5.9870 31 1 2.3134 -8.0950 -2.0992 32 1 1.5131 -7.4026 -4.4261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:17 Heat of formation + Delta-G solvation = -153.254341 kcal Electronic energy + Delta-G solvation = -25348.500966 eV Core-core repulsion = 21073.222307 eV Total energy + Delta-G solvation = -4275.278659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.047 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.53904 -46.51492 -39.88026 -39.50416 -38.48609 -35.86435 -35.22481 -32.12533 -31.15827 -30.71227 -27.58313 -25.41581 -24.90298 -23.23946 -21.03511 -20.15766 -19.43382 -18.50520 -18.13007 -17.68533 -16.83415 -16.50762 -16.10322 -15.82050 -15.53976 -14.98907 -14.77150 -14.48226 -14.04893 -13.79195 -13.64378 -13.41380 -13.06021 -12.81715 -12.77015 -12.62189 -12.43806 -11.98586 -11.74061 -11.36990 -11.29758 -11.21373 -11.13667 -10.81122 -10.50949 -10.23816 -10.14924 -9.57355 -9.35844 -9.31498 -8.97035 -8.71591 -7.83140 -6.57383 -4.26517 0.68645 1.35138 1.80437 2.62908 2.89918 3.02138 3.14348 3.15579 3.24813 3.35621 3.64258 3.95837 4.21427 4.74196 4.83110 4.90293 5.17564 5.46674 5.49294 5.60816 5.61221 5.76547 5.99539 6.16801 6.25316 6.64868 6.79906 7.15060 7.31209 7.53918 7.83620 8.11387 8.26552 8.79195 9.04889 9.48523 10.43373 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.005601 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.631438 B = 4997.595711 C = 6473.118132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.055 3.945 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.358 4.358 8 H 0.100 0.900 9 N -0.404 5.404 10 C 0.124 3.876 11 C -0.126 4.126 12 C 0.485 3.515 13 O -0.514 6.514 14 O -0.523 6.523 15 C 0.431 3.569 16 O -0.554 6.554 17 C 0.385 3.615 18 F -0.158 7.158 19 F -0.176 7.176 20 C -0.004 4.004 21 N -0.416 5.416 22 C 0.039 3.961 23 C -0.262 4.262 24 S 0.177 5.823 25 H 0.278 0.722 26 H 0.126 0.874 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.402 0.598 31 H 0.179 0.821 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -5.633 -2.674 7.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.154 4.154 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.485 4.485 8 H 0.117 0.883 9 N -0.121 5.121 10 C 0.001 3.999 11 C -0.165 4.165 12 C 0.327 3.673 13 O -0.402 6.402 14 O -0.335 6.335 15 C 0.214 3.786 16 O -0.437 6.437 17 C 0.341 3.659 18 F -0.138 7.138 19 F -0.157 7.157 20 C -0.284 4.284 21 N -0.129 5.129 22 C -0.114 4.114 23 C -0.402 4.402 24 S 0.431 5.569 25 H 0.088 0.912 26 H 0.143 0.857 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.260 0.740 31 H 0.196 0.804 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.706 -5.216 -2.977 6.587 hybrid contribution 0.185 0.035 0.575 0.605 sum 2.890 -5.181 -2.402 6.401 Atomic orbital electron populations 1.69809 1.06407 1.28963 1.42744 1.25413 0.95124 1.00197 0.94714 0.86106 0.79457 0.80347 0.79656 1.19219 1.20607 1.19326 1.19614 0.97944 0.84630 1.46327 0.88267 1.43440 1.37342 1.05378 1.25899 1.21385 0.90540 1.06506 0.81512 1.21798 0.98037 1.05559 0.91064 1.23679 0.89063 0.71391 0.83157 1.90707 1.19488 1.45003 1.85015 1.84584 1.46123 1.85102 1.17648 1.20114 0.86819 0.86053 0.85603 1.90653 1.55116 1.33545 1.64364 1.18844 0.79567 0.79495 0.87990 1.93126 1.93098 1.54816 1.72804 1.93045 1.34842 1.96441 1.91364 1.27110 1.07113 0.97357 0.96792 1.66006 1.15267 0.97221 1.34439 1.21877 1.00898 0.99274 0.89373 1.27324 1.11071 0.98347 1.03416 1.84028 1.59932 1.01675 1.11302 0.91173 0.85680 0.91210 0.88113 0.87384 0.74042 0.80401 0.80187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.37 11.33 55.50 0.63 -20.74 16 2 C 0.05 1.31 4.96 -17.47 -0.09 1.23 16 3 Si 0.92 18.71 29.61 -169.99 -5.03 13.67 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.36 -8.78 7.33 -14.93 -0.11 -8.89 16 8 H 0.10 2.41 6.81 -52.49 -0.36 2.05 16 9 N -0.40 -9.93 2.54 -114.81 -0.29 -10.22 16 10 C 0.12 2.89 4.25 -4.04 -0.02 2.87 16 11 C -0.13 -2.45 6.13 -27.88 -0.17 -2.62 16 12 C 0.48 8.77 8.33 36.01 0.30 9.07 16 13 O -0.51 -10.76 16.74 -18.75 -0.31 -11.07 16 14 O -0.52 -7.38 13.42 -39.25 -0.53 -7.91 16 15 C 0.43 10.63 7.08 -10.98 -0.08 10.55 16 16 O -0.55 -14.42 15.29 5.55 0.08 -14.33 16 17 C 0.38 8.56 1.76 -29.03 -0.05 8.51 16 18 F -0.16 -3.51 14.24 2.25 0.03 -3.48 16 19 F -0.18 -3.85 16.63 2.25 0.04 -3.81 16 20 C 0.00 -0.09 6.02 -13.45 -0.08 -0.17 16 21 N -0.42 -8.14 9.78 -11.86 -0.12 -8.25 16 22 C 0.04 0.57 11.35 -19.18 -0.22 0.35 16 23 C -0.26 -3.30 11.37 29.12 0.33 -2.97 16 24 S 0.18 2.71 22.58 -107.50 -2.43 0.29 16 25 H 0.28 6.63 8.32 -40.82 -0.34 6.29 16 26 H 0.13 3.13 5.32 -51.93 -0.28 2.86 16 27 H 0.07 1.72 7.46 -51.93 -0.39 1.33 16 28 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 29 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 30 H 0.40 3.71 9.10 45.56 0.41 4.12 16 31 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.18 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -31.22 311.47 -4.85 -36.07 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -1.43 Total: 7.17 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: -0.18 Total: 17.93 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.22 Total: -39.22 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.76 Total: -33.31 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.07 Total: -7.29 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.43 Total: 0.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.22 -4.85 -36.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.184 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds