Wall clock time and date at job start Tue Mar 31 2020 12:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00023 * 2 1 4 4 H 1.48495 * 109.46937 * 239.99651 * 3 2 1 5 5 H 1.48496 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47063 * 119.99639 * 3 2 1 7 7 C 1.38958 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00000 * 157.79956 * 7 2 1 9 9 N 1.37095 * 119.99652 * 337.79556 * 7 2 1 10 10 C 1.46510 * 120.00190 * 325.01324 * 9 7 2 11 11 C 1.52993 * 109.46649 * 269.72327 * 10 9 7 12 12 C 1.50704 * 109.47095 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99563 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00620 * 180.02562 * 12 11 10 15 15 C 1.34777 * 120.00053 * 144.73413 * 9 7 2 16 16 O 1.21292 * 120.00081 * 174.63936 * 15 9 7 17 17 C 1.50702 * 119.99539 * 354.64591 * 15 9 7 18 18 F 1.39900 * 109.47269 * 321.11524 * 17 15 9 19 19 F 1.39893 * 109.47489 * 81.12549 * 17 15 9 20 20 C 1.50704 * 109.46728 * 201.12365 * 17 15 9 21 21 N 1.29031 * 124.91517 * 299.69352 * 20 17 15 22 22 C 1.31780 * 117.12610 * 179.81632 * 21 20 17 23 23 C 1.33647 * 114.49783 * 0.47084 * 22 21 20 24 24 S 1.70971 * 124.91851 * 119.99886 * 20 17 15 25 25 H 0.97000 * 119.99889 * 5.45959 * 1 2 3 26 26 H 1.08996 * 109.46999 * 29.72484 * 10 9 7 27 27 H 1.09002 * 109.46842 * 149.72603 * 10 9 7 28 28 H 1.08996 * 109.47548 * 299.99821 * 11 10 9 29 29 H 1.09007 * 109.47690 * 60.00295 * 11 10 9 30 30 H 0.96693 * 117.00127 * 180.02562 * 14 12 11 31 31 H 1.07996 * 122.75115 * 180.22306 * 22 21 20 32 32 H 1.08000 * 126.03734 * 179.72062 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0288 -1.2382 -0.3528 9 7 1.3997 -2.3464 0.4498 10 6 0.4453 -2.2803 1.5595 11 6 1.1888 -2.4693 2.8832 12 6 0.2071 -2.4020 4.0247 13 8 -0.9666 -2.2208 3.8022 14 8 0.6367 -2.5422 5.2886 15 6 1.6743 -3.5302 -0.1331 16 8 1.2117 -4.5536 0.3249 17 6 2.5564 -3.5822 -1.3539 18 9 2.2688 -2.4933 -2.1839 19 9 3.8984 -3.5285 -0.9623 20 6 2.3026 -4.8652 -2.1027 21 7 2.4773 -6.0490 -1.6199 22 6 2.2034 -7.0668 -2.4108 23 6 1.7832 -6.7225 -3.6319 24 16 1.7487 -4.9629 -3.7172 25 1 -0.4850 0.8362 -0.0799 26 1 -0.0492 -1.3090 1.5559 27 1 -0.2996 -3.0678 1.4454 28 1 1.6833 -3.4406 2.8867 29 1 1.9338 -1.6818 2.9973 30 1 -0.0301 -2.4920 5.9870 31 1 2.3134 -8.0950 -2.0992 32 1 1.5131 -7.4026 -4.4261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:16 Heat of formation + Delta-G solvation = -175.160842 kcal Electronic energy + Delta-G solvation = -25349.450903 eV Core-core repulsion = 21073.222307 eV Total energy + Delta-G solvation = -4276.228596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.047 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.24872 -48.23002 -41.38216 -40.84007 -40.22449 -37.35676 -36.96992 -33.96472 -32.74307 -32.21226 -29.04004 -27.26418 -26.47090 -24.74913 -22.50339 -21.66850 -21.11908 -19.91916 -19.86733 -19.12274 -18.48430 -18.11700 -17.59897 -17.45845 -17.08723 -16.68609 -16.26940 -15.96842 -15.56834 -15.42939 -15.30593 -14.97421 -14.55361 -14.43092 -14.38423 -14.27317 -14.04466 -13.65482 -13.51814 -13.03915 -12.85426 -12.65427 -12.57480 -12.47328 -12.12467 -12.02224 -11.69686 -11.23277 -10.89819 -10.58967 -10.52434 -10.09915 -9.73369 -8.43201 -6.19648 -0.55475 0.11148 0.63688 1.16242 1.22554 1.47301 1.56612 1.57940 1.71177 1.86086 2.15450 2.29776 2.53542 2.91535 3.11630 3.57036 3.81010 3.89719 4.01864 4.09376 4.32852 4.43354 4.44962 4.66009 4.83616 5.08757 5.24116 5.38618 5.55779 5.67723 6.21573 6.61936 6.89731 6.98078 7.16129 7.59930 8.58190 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.005601 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.631438 B = 4997.595711 C = 6473.118132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.020 3.980 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.411 5.411 10 C 0.128 3.872 11 C -0.119 4.119 12 C 0.498 3.502 13 O -0.547 6.547 14 O -0.506 6.506 15 C 0.417 3.583 16 O -0.578 6.578 17 C 0.386 3.614 18 F -0.164 7.164 19 F -0.181 7.181 20 C -0.061 4.061 21 N -0.446 5.446 22 C 0.013 3.987 23 C -0.218 4.218 24 S 0.204 5.796 25 H 0.281 0.719 26 H 0.109 0.891 27 H 0.045 0.955 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.428 0.572 31 H 0.212 0.788 32 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -6.148 -3.347 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.498 4.498 8 H 0.116 0.884 9 N -0.127 5.127 10 C 0.004 3.996 11 C -0.157 4.157 12 C 0.342 3.658 13 O -0.438 6.438 14 O -0.320 6.320 15 C 0.201 3.799 16 O -0.463 6.463 17 C 0.343 3.657 18 F -0.144 7.144 19 F -0.162 7.162 20 C -0.338 4.338 21 N -0.161 5.161 22 C -0.139 4.139 23 C -0.357 4.357 24 S 0.457 5.543 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.290 0.710 31 H 0.228 0.772 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.329 -5.729 -3.607 7.544 hybrid contribution -0.058 0.080 0.752 0.758 sum 3.271 -5.649 -2.855 7.125 Atomic orbital electron populations 1.69907 1.07844 1.29901 1.43293 1.26217 0.95701 1.02963 0.93735 0.85166 0.78288 0.76193 0.80022 1.18758 1.20237 1.18277 1.19779 0.97999 0.84963 1.47045 0.88400 1.43675 1.37147 1.05655 1.26234 1.21213 0.90530 1.04475 0.83358 1.21570 0.98076 1.06014 0.90079 1.23192 0.87905 0.70687 0.84065 1.90707 1.20613 1.46714 1.85741 1.84498 1.46732 1.84055 1.16668 1.20609 0.87268 0.85756 0.86302 1.90603 1.56268 1.34183 1.65219 1.18617 0.78780 0.80960 0.87387 1.93093 1.93134 1.55474 1.72735 1.93016 1.35031 1.96607 1.91512 1.26634 1.11413 0.96439 0.99288 1.65950 1.15533 0.98045 1.36601 1.22411 1.01864 0.99669 0.89916 1.27945 1.06980 0.97182 1.03623 1.83831 1.58497 1.04045 1.07911 0.90905 0.87347 0.93647 0.88014 0.86216 0.71028 0.77158 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.04 11.33 21.67 0.25 -44.79 16 2 C 0.02 0.98 4.96 84.93 0.42 1.40 16 3 Si 0.98 37.94 29.61 68.60 2.03 39.98 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.37 -18.56 7.33 84.04 0.62 -17.95 16 8 H 0.10 4.84 6.81 -2.92 -0.02 4.82 16 9 N -0.41 -20.88 2.54 -635.53 -1.61 -22.50 16 10 C 0.13 6.18 4.25 86.38 0.37 6.55 16 11 C -0.12 -4.69 6.13 29.85 0.18 -4.50 16 12 C 0.50 17.81 8.33 71.24 0.59 18.40 16 13 O -0.55 -23.06 16.74 21.95 0.37 -22.70 16 14 O -0.51 -13.25 13.42 -51.39 -0.69 -13.94 16 15 C 0.42 21.31 7.08 87.66 0.62 21.93 16 16 O -0.58 -31.29 15.29 -3.07 -0.05 -31.34 16 17 C 0.39 17.69 1.76 29.10 0.05 17.74 16 18 F -0.16 -7.49 14.24 44.97 0.64 -6.85 16 19 F -0.18 -8.16 16.63 44.97 0.75 -7.41 16 20 C -0.06 -2.45 6.02 88.52 0.53 -1.92 16 21 N -0.45 -17.36 9.78 -191.44 -1.87 -19.23 16 22 C 0.01 0.35 11.35 83.66 0.95 1.30 16 23 C -0.22 -4.69 11.37 66.78 0.76 -3.93 16 24 S 0.20 5.97 22.58 -56.49 -1.28 4.70 16 25 H 0.28 13.57 8.32 -92.71 -0.77 12.80 16 26 H 0.11 5.64 5.32 -2.39 -0.01 5.63 16 27 H 0.04 2.36 7.46 -2.39 -0.02 2.35 16 28 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 29 H 0.12 4.41 8.14 -2.38 -0.02 4.39 16 30 H 0.43 6.77 9.10 -74.06 -0.67 6.09 16 31 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.23 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -70.56 311.47 4.17 -66.40 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.54 Total: 18.67 kcal Atomic # 6 Polarization: 33.93 SS G_CDS: 5.09 Total: 39.02 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -3.24 Total: -86.52 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -0.37 Total: -67.98 kcal Atomic # 9 Polarization: -15.65 SS G_CDS: 1.39 Total: -14.27 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.28 Total: 4.70 kcal Total: -70.56 4.17 -66.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.766 kcal (2) G-P(sol) polarization free energy of solvation -70.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds