Wall clock time and date at job start Tue Mar 31 2020 12:37:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46501 * 109.47533 * 2 1
4 4 C 1.46498 * 119.99939 * 86.38339 * 3 2 1
5 5 C 1.50700 * 109.47166 * 85.00256 * 4 3 2
6 6 H 1.08000 * 119.99596 * 359.97438 * 5 4 3
7 7 C 1.37877 * 120.00208 * 179.97438 * 5 4 3
8 8 N 1.31515 * 120.00224 * 180.02562 * 7 5 4
9 9 Si 1.86800 * 119.99769 * 359.97438 * 7 5 4
10 10 H 1.48499 * 109.46867 * 89.99996 * 9 7 5
11 11 H 1.48499 * 109.47188 * 210.00335 * 9 7 5
12 12 H 1.48500 * 109.47212 * 329.99872 * 9 7 5
13 13 S 1.65598 * 119.99830 * 266.38548 * 3 2 1
14 14 O 1.42098 * 106.40005 * 209.10925 * 13 3 2
15 15 O 1.42101 * 106.40406 * 342.03331 * 13 3 2
16 16 C 1.76209 * 107.21661 * 95.56831 * 13 3 2
17 17 C 1.34974 * 124.15560 * 13.84119 * 16 13 3
18 18 S 1.71757 * 105.46494 * 179.97438 * 17 16 13
19 19 N 1.56146 * 97.28224 * 0.02562 * 18 17 16
20 20 C 1.30658 * 109.79259 * 359.71691 * 19 18 17
21 21 C 1.47559 * 122.11316 * 180.27483 * 20 19 18
22 22 O 1.21500 * 120.00036 * 174.61959 * 21 20 19
23 23 O 1.34739 * 120.00157 * 354.62948 * 21 20 19
24 24 H 1.09001 * 109.46904 * 65.24794 * 1 2 3
25 25 H 1.08995 * 109.47193 * 185.24637 * 1 2 3
26 26 H 1.08996 * 109.47001 * 305.25348 * 1 2 3
27 27 H 1.08997 * 109.47147 * 239.99613 * 2 1 3
28 28 H 1.09001 * 109.46824 * 119.99705 * 2 1 3
29 29 H 1.08997 * 109.46878 * 205.00163 * 4 3 2
30 30 H 1.09000 * 109.47188 * 324.99784 * 4 3 2
31 31 H 0.96994 * 120.00003 * 180.02562 * 8 7 5
32 32 H 1.08002 * 127.27044 * 359.96870 * 17 16 13
33 33 H 0.96702 * 116.99551 * 180.02562 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1872 2.0984 1.2662
5 6 3.5374 1.7737 1.8514
6 1 4.2030 1.1000 1.3323
7 6 3.9230 2.3365 3.0495
8 7 5.1015 2.0535 3.5600
9 14 2.7719 3.5023 3.9470
10 1 1.9073 2.7283 4.8736
11 1 3.5695 4.4874 4.7207
12 1 1.9239 4.2179 2.9602
13 16 2.3797 2.1316 -1.4313
14 8 3.3997 3.0777 -1.1420
15 8 2.5270 1.1012 -2.3987
16 6 0.9596 3.0604 -1.9062
17 6 -0.0764 3.3338 -1.0853
18 16 -1.1777 4.2542 -2.0288
19 7 -0.3462 4.2638 -3.3504
20 6 0.7705 3.6085 -3.1753
21 6 1.7665 3.4538 -4.2530
22 8 2.8342 2.9220 -4.0218
23 8 1.4921 3.9026 -5.4935
24 1 -0.3633 0.4303 -0.9333
25 1 -0.3633 -1.0233 0.0940
26 1 -0.3633 0.5931 0.8392
27 1 1.8933 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8900
29 1 2.1170 3.1715 1.0880
30 1 1.4063 1.7940 1.9631
31 1 5.3726 2.4492 4.4031
32 1 -0.1891 3.0365 -0.0532
33 1 2.1755 3.7785 -6.1663
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001610000718.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:48
Heat of formation + Delta-G solvation = -102.252948 kcal
Electronic energy + Delta-G solvation = -23664.925387 eV
Core-core repulsion = 19945.698701 eV
Total energy + Delta-G solvation = -3719.226686 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 320.038 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.89744 -39.00888 -36.61233 -36.48016 -36.23749 -35.13005 -32.65672 -32.16383
-30.38366 -27.65976 -27.20995 -23.51984 -23.05243 -21.83738 -20.93702 -19.32473
-18.54228 -17.90301 -17.65339 -16.89682 -16.65957 -16.35258 -15.69502 -15.59583
-14.70850 -14.29315 -14.26651 -14.02229 -13.70246 -13.53859 -12.89035 -12.57597
-12.23645 -12.06311 -12.03523 -11.79058 -11.74687 -11.46111 -11.37333 -11.16928
-11.09789 -10.99485 -10.70244 -10.60356 -10.47875 -10.34203 -10.25579 -9.59245
-9.39797 -8.64036 -8.28666 -6.11423 -4.11180 0.09218 0.62275 0.84752
1.15964 1.33142 2.55981 2.67540 3.20033 3.25264 3.29143 3.50696
4.06117 4.33015 4.41885 4.77583 4.91753 5.09550 5.11196 5.21603
5.29668 5.53158 5.57225 5.67034 5.81360 6.11631 6.17683 6.35448
6.42995 6.58429 6.95721 7.26787 7.50755 7.57973 8.44919 8.95161
9.46366 11.02192
Molecular weight = 320.04amu
Principal moments of inertia in cm(-1)
A = 0.016387 B = 0.005516 C = 0.005154
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1708.261622 B = 5074.930609 C = 5431.522561
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.113 3.887
3 N -0.978 5.978
4 C 0.221 3.779
5 C -0.530 4.530
6 H 0.081 0.919
7 C 0.074 3.926
8 N -0.892 5.892
9 Si 0.870 3.130
10 H -0.274 1.274
11 H -0.282 1.282
12 H -0.265 1.265
13 S 2.711 3.289
14 O -0.919 6.919
15 O -0.944 6.944
16 C -0.680 4.680
17 C -0.177 4.177
18 S 0.514 5.486
19 N -0.497 5.497
20 C 0.137 3.863
21 C 0.550 3.450
22 O -0.473 6.473
23 O -0.491 6.491
24 H 0.046 0.954
25 H 0.067 0.933
26 H 0.061 0.939
27 H 0.084 0.916
28 H 0.094 0.906
29 H 0.032 0.968
30 H 0.034 0.966
31 H 0.265 0.735
32 H 0.206 0.794
33 H 0.420 0.580
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.235 2.339 -10.826 19.653
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.013 4.013
3 N -0.819 5.819
4 C 0.098 3.902
5 C -0.570 4.570
6 H 0.099 0.901
7 C -0.129 4.129
8 N -0.530 5.530
9 Si 0.696 3.304
10 H -0.199 1.199
11 H -0.208 1.208
12 H -0.190 1.190
13 S 2.790 3.210
14 O -0.909 6.909
15 O -0.934 6.934
16 C -0.773 4.773
17 C -0.326 4.326
18 S 0.669 5.331
19 N -0.332 5.332
20 C -0.036 4.036
21 C 0.386 3.614
22 O -0.357 6.357
23 O -0.302 6.302
24 H 0.065 0.935
25 H 0.086 0.914
26 H 0.080 0.920
27 H 0.103 0.897
28 H 0.113 0.887
29 H 0.050 0.950
30 H 0.052 0.948
31 H 0.076 0.924
32 H 0.223 0.777
33 H 0.280 0.720
Dipole moment (debyes) X Y Z Total
from point charges -17.105 3.435 -11.455 20.871
hybrid contribution 0.824 -0.068 0.643 1.048
sum -16.281 3.368 -10.813 19.832
Atomic orbital electron populations
1.22321 0.97384 1.02380 1.01449 1.21285 0.92875 0.82493 1.04652
1.57420 1.81288 1.21466 1.21712 1.19561 0.98616 0.91237 0.80804
1.21324 1.00061 1.29388 1.06181 0.90076 1.24865 0.95054 0.95957
0.97014 1.69883 1.19484 1.43960 1.19662 0.86961 0.81398 0.81630
0.80378 1.19930 1.20756 1.19021 1.02204 0.72746 0.73731 0.72348
1.93626 1.49960 1.63466 1.83852 1.93518 1.84174 1.56070 1.59658
1.32177 1.24889 1.20902 0.99376 1.27325 0.97956 1.00715 1.06606
1.80497 1.21149 1.38513 0.92961 1.72286 1.10203 1.22910 1.27844
1.19237 0.92667 1.00034 0.91637 1.19661 0.84502 0.75292 0.81944
1.91072 1.23682 1.38605 1.82371 1.84583 1.50546 1.75641 1.19421
0.93505 0.91450 0.92007 0.89738 0.88721 0.95032 0.94839 0.92444
0.77738 0.72046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.10 10.24 37.16 0.38 -1.72 16
2 C 0.11 1.80 6.37 -4.04 -0.03 1.78 16
3 N -0.98 -19.02 2.47 -115.66 -0.29 -19.31 16
4 C 0.22 4.84 4.05 -5.19 -0.02 4.82 16
5 C -0.53 -14.60 9.94 -34.44 -0.34 -14.94 16
6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16
7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16
8 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16
9 Si 0.87 20.09 27.47 -169.99 -4.67 15.42 16
10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
12 H -0.27 -5.66 6.54 56.52 0.37 -5.30 16
13 S 2.71 56.34 4.20 -107.50 -0.45 55.88 16
14 O -0.92 -23.01 17.10 -58.80 -1.01 -24.01 16
15 O -0.94 -20.49 14.56 -66.41 -0.97 -21.46 16
16 C -0.68 -11.23 5.91 -40.26 -0.24 -11.46 16
17 C -0.18 -2.20 10.97 29.57 0.32 -1.88 16
18 S 0.51 5.09 23.20 -107.50 -2.49 2.59 16
19 N -0.50 -6.83 11.22 24.87 0.28 -6.55 16
20 C 0.14 2.21 6.66 -84.08 -0.56 1.65 16
21 C 0.55 8.94 8.29 34.53 0.29 9.22 16
22 O -0.47 -9.20 13.95 -27.27 -0.38 -9.58 16
23 O -0.49 -5.82 13.33 -40.60 -0.54 -6.36 16
24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
27 H 0.08 1.33 6.91 -51.93 -0.36 0.98 16
28 H 0.09 1.53 8.10 -51.93 -0.42 1.11 16
29 H 0.03 0.69 6.82 -51.93 -0.35 0.34 16
30 H 0.03 0.65 7.54 -51.93 -0.39 0.26 16
31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
32 H 0.21 2.06 7.95 -52.49 -0.42 1.64 16
33 H 0.42 2.66 9.11 45.56 0.42 3.08 16
LS Contribution 317.31 15.07 4.78 4.78
Total: -1.00 -37.55 317.31 -7.64 -45.19
By element:
Atomic # 1 Polarization: 2.45 SS G_CDS: -2.38 Total: 0.06 kcal
Atomic # 6 Polarization: -10.26 SS G_CDS: -0.29 Total: -10.55 kcal
Atomic # 7 Polarization: -52.73 SS G_CDS: 0.77 Total: -51.96 kcal
Atomic # 8 Polarization: -58.52 SS G_CDS: -2.89 Total: -61.42 kcal
Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal
Atomic # 16 Polarization: 61.42 SS G_CDS: -2.95 Total: 58.47 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -37.55 -7.64 -45.19 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001610000718.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.062 kcal
(2) G-P(sol) polarization free energy of solvation -37.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.615 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.253 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds