Wall clock time and date at job start Tue Mar 31 2020 12:37:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46501 * 109.47533 * 2 1
4 4 C 1.46498 * 119.99939 * 86.38339 * 3 2 1
5 5 C 1.50700 * 109.47166 * 85.00256 * 4 3 2
6 6 H 1.08000 * 119.99596 * 359.97438 * 5 4 3
7 7 C 1.37877 * 120.00208 * 179.97438 * 5 4 3
8 8 N 1.31515 * 120.00224 * 180.02562 * 7 5 4
9 9 Si 1.86800 * 119.99769 * 359.97438 * 7 5 4
10 10 H 1.48499 * 109.46867 * 89.99996 * 9 7 5
11 11 H 1.48499 * 109.47188 * 210.00335 * 9 7 5
12 12 H 1.48500 * 109.47212 * 329.99872 * 9 7 5
13 13 S 1.65598 * 119.99830 * 266.38548 * 3 2 1
14 14 O 1.42098 * 106.40005 * 209.10925 * 13 3 2
15 15 O 1.42101 * 106.40406 * 342.03331 * 13 3 2
16 16 C 1.76209 * 107.21661 * 95.56831 * 13 3 2
17 17 C 1.34974 * 124.15560 * 13.84119 * 16 13 3
18 18 S 1.71757 * 105.46494 * 179.97438 * 17 16 13
19 19 N 1.56146 * 97.28224 * 0.02562 * 18 17 16
20 20 C 1.30658 * 109.79259 * 359.71691 * 19 18 17
21 21 C 1.47559 * 122.11316 * 180.27483 * 20 19 18
22 22 O 1.21500 * 120.00036 * 174.61959 * 21 20 19
23 23 O 1.34739 * 120.00157 * 354.62948 * 21 20 19
24 24 H 1.09001 * 109.46904 * 65.24794 * 1 2 3
25 25 H 1.08995 * 109.47193 * 185.24637 * 1 2 3
26 26 H 1.08996 * 109.47001 * 305.25348 * 1 2 3
27 27 H 1.08997 * 109.47147 * 239.99613 * 2 1 3
28 28 H 1.09001 * 109.46824 * 119.99705 * 2 1 3
29 29 H 1.08997 * 109.46878 * 205.00163 * 4 3 2
30 30 H 1.09000 * 109.47188 * 324.99784 * 4 3 2
31 31 H 0.96994 * 120.00003 * 180.02562 * 8 7 5
32 32 H 1.08002 * 127.27044 * 359.96870 * 17 16 13
33 33 H 0.96702 * 116.99551 * 180.02562 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1872 2.0984 1.2662
5 6 3.5374 1.7737 1.8514
6 1 4.2030 1.1000 1.3323
7 6 3.9230 2.3365 3.0495
8 7 5.1015 2.0535 3.5600
9 14 2.7719 3.5023 3.9470
10 1 1.9073 2.7283 4.8736
11 1 3.5695 4.4874 4.7207
12 1 1.9239 4.2179 2.9602
13 16 2.3797 2.1316 -1.4313
14 8 3.3997 3.0777 -1.1420
15 8 2.5270 1.1012 -2.3987
16 6 0.9596 3.0604 -1.9062
17 6 -0.0764 3.3338 -1.0853
18 16 -1.1777 4.2542 -2.0288
19 7 -0.3462 4.2638 -3.3504
20 6 0.7705 3.6085 -3.1753
21 6 1.7665 3.4538 -4.2530
22 8 2.8342 2.9220 -4.0218
23 8 1.4921 3.9026 -5.4935
24 1 -0.3633 0.4303 -0.9333
25 1 -0.3633 -1.0233 0.0940
26 1 -0.3633 0.5931 0.8392
27 1 1.8933 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8900
29 1 2.1170 3.1715 1.0880
30 1 1.4063 1.7940 1.9631
31 1 5.3726 2.4492 4.4031
32 1 -0.1891 3.0365 -0.0532
33 1 2.1755 3.7785 -6.1663
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001610000718.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:47
Heat of formation + Delta-G solvation = -134.100415 kcal
Electronic energy + Delta-G solvation = -23666.306397 eV
Core-core repulsion = 19945.698701 eV
Total energy + Delta-G solvation = -3720.607696 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 320.038 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-42.02398 -40.10965 -38.25924 -37.88162 -37.48611 -36.79331 -34.65486 -33.23431
-31.82456 -28.99685 -28.69776 -24.65610 -24.61093 -23.37989 -22.12780 -20.39227
-19.72599 -19.40035 -18.91699 -18.82872 -18.06626 -17.59561 -17.14439 -16.95062
-16.21603 -15.79978 -15.49828 -15.31339 -14.78637 -14.73751 -14.53255 -14.21947
-13.75366 -13.45385 -13.26001 -13.16169 -13.04301 -12.86395 -12.79317 -12.67032
-12.58906 -12.37797 -12.19881 -11.96370 -11.85937 -11.70414 -11.62373 -11.51824
-10.72692 -10.30609 -9.87545 -8.23750 -6.30528 -0.90358 -0.80655 -0.32882
0.18680 0.33435 1.38506 1.39543 1.46444 1.54346 1.64891 2.08332
2.40572 2.67935 3.09821 3.22506 3.58739 3.75706 3.87920 3.98957
4.14903 4.44291 4.46041 4.59594 4.68932 4.82891 5.03965 5.08910
5.20170 5.40753 5.43679 5.51387 5.76358 6.34569 6.60662 6.73430
7.31908 8.94360
Molecular weight = 320.04amu
Principal moments of inertia in cm(-1)
A = 0.016387 B = 0.005516 C = 0.005154
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1708.261622 B = 5074.930609 C = 5431.522561
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.102 3.898
3 N -0.981 5.981
4 C 0.226 3.774
5 C -0.544 4.544
6 H 0.023 0.977
7 C 0.002 3.998
8 N -0.953 5.953
9 Si 0.944 3.056
10 H -0.247 1.247
11 H -0.290 1.290
12 H -0.228 1.228
13 S 2.717 3.283
14 O -0.983 6.983
15 O -0.972 6.972
16 C -0.703 4.703
17 C -0.182 4.182
18 S 0.657 5.343
19 N -0.519 5.519
20 C 0.110 3.890
21 C 0.546 3.454
22 O -0.521 6.521
23 O -0.477 6.477
24 H 0.056 0.944
25 H 0.090 0.910
26 H 0.080 0.920
27 H 0.075 0.925
28 H 0.085 0.915
29 H 0.040 0.960
30 H 0.076 0.924
31 H 0.267 0.733
32 H 0.233 0.767
33 H 0.441 0.559
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.630 4.085 -10.252 24.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.023 4.023
3 N -0.822 5.822
4 C 0.102 3.898
5 C -0.583 4.583
6 H 0.042 0.958
7 C -0.195 4.195
8 N -0.593 5.593
9 Si 0.764 3.236
10 H -0.171 1.171
11 H -0.217 1.217
12 H -0.151 1.151
13 S 2.803 3.197
14 O -0.972 6.972
15 O -0.962 6.962
16 C -0.802 4.802
17 C -0.331 4.331
18 S 0.810 5.190
19 N -0.357 5.357
20 C -0.061 4.061
21 C 0.385 3.615
22 O -0.410 6.410
23 O -0.290 6.290
24 H 0.075 0.925
25 H 0.108 0.892
26 H 0.099 0.901
27 H 0.093 0.907
28 H 0.103 0.897
29 H 0.058 0.942
30 H 0.093 0.907
31 H 0.075 0.925
32 H 0.250 0.750
33 H 0.304 0.696
Dipole moment (debyes) X Y Z Total
from point charges -22.466 5.116 -10.926 25.500
hybrid contribution 2.374 -0.586 0.333 2.467
sum -20.092 4.530 -10.593 23.161
Atomic orbital electron populations
1.22280 0.93255 1.04450 1.02805 1.21540 0.96305 0.80608 1.03811
1.57237 1.81911 1.22707 1.20305 1.19454 0.96267 0.91998 0.82057
1.21692 1.02149 1.28267 1.06206 0.95839 1.26033 0.97113 0.98193
0.98139 1.70095 1.22510 1.46144 1.20534 0.85794 0.79307 0.78872
0.79601 1.17095 1.21663 1.15052 1.01227 0.73228 0.73117 0.72153
1.93544 1.54150 1.64894 1.84660 1.93464 1.85332 1.57091 1.60288
1.31306 1.24700 1.23218 1.01018 1.27818 0.97376 1.00076 1.07816
1.80066 1.16563 1.33409 0.88940 1.71929 1.09802 1.22598 1.31353
1.19046 0.93640 1.01901 0.91468 1.19996 0.84064 0.74371 0.83071
1.91054 1.25662 1.41036 1.83231 1.84543 1.51307 1.74550 1.18620
0.92485 0.89157 0.90147 0.90675 0.89661 0.94178 0.90652 0.92463
0.75018 0.69581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.45 10.24 71.98 0.74 -2.71 16
2 C 0.10 3.22 6.37 86.38 0.55 3.77 16
3 N -0.98 -38.07 2.47 -519.85 -1.28 -39.35 16
4 C 0.23 9.61 4.05 85.63 0.35 9.96 16
5 C -0.54 -31.00 9.94 25.60 0.25 -30.74 16
6 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16
7 C 0.00 0.14 5.47 84.65 0.46 0.60 16
8 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16
9 Si 0.94 40.10 27.47 68.60 1.88 41.98 16
10 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16
11 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16
12 H -0.23 -8.25 6.54 99.48 0.65 -7.60 16
13 S 2.72 116.30 4.20 -56.49 -0.24 116.06 16
14 O -0.98 -52.00 17.10 -126.44 -2.16 -54.16 16
15 O -0.97 -44.49 14.56 -119.17 -1.73 -46.23 16
16 C -0.70 -22.11 5.91 21.83 0.13 -21.98 16
17 C -0.18 -3.74 10.97 67.07 0.74 -3.00 16
18 S 0.66 9.34 23.20 -56.49 -1.31 8.03 16
19 N -0.52 -12.45 11.22 -75.24 -0.84 -13.30 16
20 C 0.11 3.38 6.66 42.09 0.28 3.66 16
21 C 0.55 17.98 8.29 70.28 0.58 18.56 16
22 O -0.52 -21.44 13.95 27.49 0.38 -21.06 16
23 O -0.48 -10.99 13.33 -56.49 -0.75 -11.74 16
24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
27 H 0.07 2.47 6.91 -2.39 -0.02 2.45 16
28 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16
29 H 0.04 1.66 6.82 -2.39 -0.02 1.64 16
30 H 0.08 2.62 7.54 -2.39 -0.02 2.60 16
31 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16
32 H 0.23 3.29 7.95 -2.91 -0.02 3.26 16
33 H 0.44 5.39 9.11 -74.06 -0.67 4.71 16
Total: -1.00 -90.91 317.31 -1.23 -92.14
By element:
Atomic # 1 Polarization: 8.84 SS G_CDS: 0.44 Total: 9.29 kcal
Atomic # 6 Polarization: -25.97 SS G_CDS: 4.08 Total: -21.89 kcal
Atomic # 7 Polarization: -110.59 SS G_CDS: -1.83 Total: -112.41 kcal
Atomic # 8 Polarization: -128.92 SS G_CDS: -4.27 Total: -133.19 kcal
Atomic # 14 Polarization: 40.10 SS G_CDS: 1.88 Total: 41.98 kcal
Atomic # 16 Polarization: 125.64 SS G_CDS: -1.55 Total: 124.09 kcal
Total: -90.91 -1.23 -92.14 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001610000718.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.961 kcal
(2) G-P(sol) polarization free energy of solvation -90.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.100 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds