Wall clock time and date at job start Tue Mar 31 2020 13:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86809 * 119.99509 * 2 1 4 4 H 1.48493 * 109.47276 * 272.59340 * 3 2 1 5 5 H 1.48505 * 109.46828 * 32.59499 * 3 2 1 6 6 H 1.48501 * 109.46768 * 152.59302 * 3 2 1 7 7 C 1.39924 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00120 * 347.80539 * 7 2 1 9 9 C 1.41415 * 119.99949 * 167.80238 * 7 2 1 10 10 C 1.40778 * 120.20866 * 328.84072 * 9 7 2 11 11 C 1.37652 * 119.88672 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32419 * 359.73930 * 11 10 9 13 13 C 1.39269 * 120.42896 * 0.51499 * 12 11 10 14 14 N 1.39843 * 119.94966 * 179.76026 * 13 12 11 15 15 C 1.34777 * 120.00238 * 215.05607 * 14 13 12 16 16 O 1.21548 * 119.99715 * 355.59276 * 15 14 13 17 17 C 1.47962 * 120.00236 * 175.31573 * 15 14 13 18 18 N 1.32845 * 119.74805 * 359.72981 * 17 15 14 19 19 C 1.31450 * 121.69542 * 179.71015 * 18 17 15 20 20 C 1.38623 * 120.99419 * 0.57116 * 19 18 17 21 21 C 1.38584 * 119.38528 * 359.71307 * 20 19 18 22 22 Cl 1.73598 * 120.78050 * 179.97438 * 21 20 19 23 23 C 1.39107 * 118.44072 * 0.02562 * 21 20 19 24 24 F 1.35095 * 120.50905 * 180.02562 * 23 21 20 25 25 C 1.38309 * 120.09853 * 359.49196 * 13 12 11 26 26 H 0.96995 * 120.00867 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.05503 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.83382 * 180.02562 * 11 10 9 29 29 H 1.08006 * 119.78554 * 180.25939 * 12 11 10 30 30 H 0.97001 * 120.00199 * 35.06451 * 14 13 12 31 31 H 1.08004 * 119.50023 * 180.30488 * 19 18 17 32 32 H 1.07997 * 120.30841 * 179.70385 * 20 19 18 33 33 H 1.07994 * 120.15948 * 180.23232 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.4348 2.0783 -1.3986 5 1 1.4680 2.6363 0.7543 6 1 3.5661 1.4251 0.6445 7 6 2.0080 -1.2117 -0.0005 8 1 1.4864 -2.1366 0.1966 9 6 3.3982 -1.2253 -0.2593 10 6 3.9691 -0.2631 -1.1137 11 6 5.3230 -0.2828 -1.3614 12 6 6.1283 -1.2420 -0.7696 13 6 5.5769 -2.2034 0.0737 14 7 6.3985 -3.1701 0.6618 15 6 5.9352 -4.4208 0.8558 16 8 4.7787 -4.6878 0.5939 17 6 6.8359 -5.4702 1.3818 18 7 8.1019 -5.1755 1.6561 19 6 8.9336 -6.0764 2.1299 20 6 8.5218 -7.3812 2.3524 21 6 7.2114 -7.7372 2.0757 22 17 6.6572 -9.3610 2.3401 23 6 6.3507 -6.7631 1.5802 24 9 5.0646 -7.0642 1.2967 25 6 4.2186 -2.2001 0.3347 26 1 -0.4851 0.8399 0.0004 27 1 3.3457 0.4887 -1.5747 28 1 5.7601 0.4560 -2.0167 29 1 7.1903 -1.2468 -0.9668 30 1 7.3019 -2.9406 0.9303 31 1 9.9544 -5.7967 2.3452 32 1 9.2158 -8.1136 2.7375 33 1 3.7906 -2.9428 0.9914 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640867513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:04 Heat of formation + Delta-G solvation = -39.702843 kcal Electronic energy + Delta-G solvation = -23066.273650 eV Core-core repulsion = 19224.644472 eV Total energy + Delta-G solvation = -3841.629178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.047 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.29900 -41.94977 -40.77715 -39.16925 -38.02875 -36.32474 -35.10321 -33.60895 -32.51036 -32.19779 -30.40320 -27.21473 -26.39302 -24.85694 -23.67007 -22.71287 -21.83041 -19.85235 -19.42415 -18.90542 -18.55546 -17.80794 -17.46135 -17.09180 -16.98599 -16.46042 -16.24250 -15.64198 -15.44680 -15.24513 -14.75543 -14.73138 -14.61391 -14.34995 -14.04869 -13.89254 -13.51810 -13.34477 -12.98822 -12.92530 -12.45694 -12.36212 -11.83246 -11.64285 -11.43731 -11.19499 -11.05816 -10.78802 -10.76369 -10.38488 -9.55783 -8.94467 -8.87612 -6.56350 -0.90398 -0.45972 0.51833 0.63268 0.78658 1.26051 1.42655 1.46400 1.53357 1.79910 2.14020 2.36402 2.55354 2.62429 2.83175 3.21576 3.41382 3.46765 3.92449 4.08420 4.31727 4.38269 4.50581 4.53034 4.58344 4.81940 4.96199 4.98054 5.17519 5.30068 5.54889 5.67857 5.75650 5.90432 6.17765 6.22785 6.33794 6.47532 6.72032 6.77060 7.02607 8.22151 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.003130 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.830482 B = 8944.315539 C = 9852.072290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.246 1.246 7 C -0.489 4.489 8 H 0.039 0.961 9 C 0.083 3.917 10 C -0.257 4.257 11 C -0.062 4.062 12 C -0.230 4.230 13 C 0.161 3.839 14 N -0.632 5.632 15 C 0.553 3.447 16 O -0.543 6.543 17 C 0.047 3.953 18 N -0.434 5.434 19 C 0.120 3.880 20 C -0.081 4.081 21 C -0.049 4.049 22 Cl -0.019 7.019 23 C 0.091 3.909 24 F -0.118 7.118 25 C -0.222 4.222 26 H 0.294 0.706 27 H 0.104 0.896 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.430 0.570 31 H 0.237 0.763 32 H 0.211 0.789 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.193 -11.982 5.778 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.174 4.174 3 Si 0.802 3.198 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.169 1.169 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.080 3.920 10 C -0.276 4.276 11 C -0.080 4.080 12 C -0.251 4.251 13 C 0.067 3.933 14 N -0.277 5.277 15 C 0.339 3.661 16 O -0.419 6.419 17 C -0.090 4.090 18 N -0.146 5.146 19 C -0.041 4.041 20 C -0.101 4.101 21 C -0.084 4.084 22 Cl 0.010 6.990 23 C 0.067 3.933 24 F -0.096 7.096 25 C -0.244 4.244 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.164 0.836 29 H 0.166 0.834 30 H 0.270 0.730 31 H 0.253 0.747 32 H 0.227 0.773 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 24.247 -11.424 5.456 27.353 hybrid contribution -1.349 -0.791 0.262 1.586 sum 22.898 -12.215 5.718 26.575 Atomic orbital electron populations 1.69704 1.09357 1.31500 1.38246 1.26994 0.95601 1.04605 0.90159 0.85322 0.79330 0.75189 0.79976 1.17478 1.20705 1.16903 1.19449 0.92745 0.94713 1.44957 0.94249 1.17730 0.92564 0.91754 0.89971 1.21223 0.96690 1.04179 1.05547 1.20898 0.92161 0.97484 0.97480 1.20663 1.00595 0.99766 1.04037 1.17654 0.89723 0.90498 0.95400 1.43003 1.17773 1.07946 1.58995 1.18240 0.86475 0.82917 0.78469 1.90931 1.18674 1.81598 1.50685 1.20801 0.93072 0.90738 1.04372 1.67666 1.00077 1.37629 1.09186 1.23947 1.01195 0.87231 0.91731 1.22967 0.92282 0.99795 0.95096 1.21648 0.95640 0.87819 1.03317 1.98439 1.89786 1.16323 1.94467 1.18779 0.80429 0.93655 1.00401 1.91618 1.34414 1.93195 1.90381 1.21122 0.93151 1.03770 1.06329 0.89569 0.87844 0.83570 0.83443 0.72979 0.74726 0.77252 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.65 13.93 21.82 0.30 -50.35 16 2 C 0.04 2.24 5.47 85.25 0.47 2.70 16 3 Si 0.98 44.42 24.40 68.60 1.67 46.09 16 4 H -0.25 -10.39 6.67 99.48 0.66 -9.72 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.25 -11.12 6.66 99.48 0.66 -10.45 16 7 C -0.49 -30.37 9.60 23.46 0.23 -30.15 16 8 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 9 C 0.08 4.62 5.13 -21.31 -0.11 4.51 16 10 C -0.26 -12.38 6.99 22.75 0.16 -12.22 16 11 C -0.06 -2.41 10.02 22.20 0.22 -2.19 16 12 C -0.23 -8.47 9.97 22.59 0.23 -8.24 16 13 C 0.16 6.86 6.29 38.13 0.24 7.10 16 14 N -0.63 -21.95 5.32 -306.15 -1.63 -23.58 16 15 C 0.55 20.95 7.64 86.82 0.66 21.61 16 16 O -0.54 -26.40 12.76 -3.87 -0.05 -26.45 16 17 C 0.05 1.32 6.75 41.88 0.28 1.60 16 18 N -0.43 -8.12 9.55 -184.86 -1.76 -9.89 16 19 C 0.12 0.99 11.18 84.84 0.95 1.93 16 20 C -0.08 -0.63 9.93 22.44 0.22 -0.41 16 21 C -0.05 -0.86 6.37 22.56 0.14 -0.71 16 22 Cl -0.02 -0.33 28.75 -2.72 -0.08 -0.40 16 23 C 0.09 2.49 7.29 22.79 0.17 2.66 16 24 F -0.12 -4.15 15.20 44.97 0.68 -3.47 16 25 C -0.22 -11.80 8.43 22.86 0.19 -11.61 16 26 H 0.29 15.39 8.30 -92.71 -0.77 14.62 16 27 H 0.10 4.89 4.39 -2.91 -0.01 4.88 16 28 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.43 11.28 8.16 -92.71 -0.76 10.52 16 31 H 0.24 -0.58 8.06 -2.91 -0.02 -0.60 16 32 H 0.21 -0.33 8.06 -2.91 -0.02 -0.35 16 33 H 0.09 5.20 6.23 -2.91 -0.02 5.19 16 Total: -1.00 -81.02 308.76 3.55 -77.47 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.36 Total: 14.00 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 4.05 Total: -23.43 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.09 Total: -83.82 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.05 Total: -26.45 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.68 Total: -3.47 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.09 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.40 kcal Total: -81.02 3.55 -77.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640867513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.765 kcal (2) G-P(sol) polarization free energy of solvation -81.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds