Wall clock time and date at job start Tue Mar 31 2020 12:06:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31551 * 1
3 3 Si 1.86801 * 120.00096 * 2 1
4 4 H 1.48503 * 109.47232 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47355 * 300.00327 * 3 2 1
6 6 H 1.48507 * 109.46726 * 60.00367 * 3 2 1
7 7 C 1.38652 * 120.00092 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00655 * 179.97438 * 7 2 1
9 9 O 1.34834 * 120.00189 * 0.02562 * 7 2 1
10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2
11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7
12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9
13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10
14 14 C 1.50702 * 119.93331 * 180.29799 * 13 12 11
15 15 N 1.46500 * 109.46789 * 89.99748 * 14 13 12
16 16 C 1.39623 * 119.99625 * 180.02562 * 15 14 13
17 17 C 1.34095 * 125.23795 * 180.02562 * 16 15 14
18 18 C 1.38582 * 114.72048 * 180.02562 * 17 16 15
19 19 C 1.33222 * 114.98175 * 0.02562 * 18 17 16
20 20 N 1.48191 * 125.12575 * 179.97438 * 19 18 17
21 21 O 1.21796 * 119.99865 * 359.97438 * 20 19 18
22 22 O 1.21800 * 119.99886 * 180.02562 * 20 19 18
23 23 S 1.75856 * 109.74921 * 359.73370 * 19 18 17
24 24 C 1.38308 * 120.13808 * 0.27516 * 13 12 11
25 25 C 1.38100 * 120.06790 * 359.97438 * 24 13 12
26 26 H 0.97006 * 120.00187 * 0.02562 * 1 2 3
27 27 H 1.08002 * 120.03090 * 0.02562 * 11 10 9
28 28 H 1.08000 * 119.96243 * 179.74600 * 12 11 10
29 29 H 1.08992 * 109.47246 * 209.99819 * 14 13 12
30 30 H 1.08999 * 109.46761 * 330.00230 * 14 13 12
31 31 H 0.96994 * 120.00364 * 0.02562 * 15 14 13
32 32 H 1.08005 * 122.63766 * 359.97438 * 17 16 15
33 33 H 1.07994 * 122.50846 * 180.02562 * 18 17 16
34 34 H 1.07997 * 119.96346 * 180.02562 * 24 13 12
35 35 H 1.07996 * 120.03027 * 180.02562 * 25 24 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.7096 1.3464 0.0006
5 1 1.8908 2.3965 -1.2125
6 1 1.8908 2.3964 1.2126
7 6 2.0088 -1.2008 -0.0005
8 1 3.0888 -1.2009 -0.0010
9 8 1.3347 -2.3685 -0.0016
10 6 2.0699 -3.5047 0.1045
11 6 1.4364 -4.7352 0.2200
12 6 2.1872 -5.8888 0.3330
13 6 3.5684 -5.8206 0.3203
14 6 4.3847 -7.0820 0.4372
15 7 4.6429 -7.6220 -0.9000
16 6 5.3849 -8.7956 -1.0475
17 6 5.6834 -9.3804 -2.2167
18 6 6.4329 -10.5411 -2.1095
19 6 6.7415 -10.8985 -0.8638
20 7 7.5310 -12.0959 -0.4911
21 8 7.9516 -12.8418 -1.3572
22 8 7.7585 -12.3346 0.6814
23 16 6.0767 -9.7313 0.2712
24 6 4.2022 -4.5972 0.2002
25 6 3.4571 -3.4396 0.0920
26 1 -0.4851 0.8401 -0.0004
27 1 0.3578 -4.7895 0.2251
28 1 1.6951 -6.8456 0.4270
29 1 5.3318 -6.8578 0.9276
30 1 3.8356 -7.8168 1.0259
31 1 4.2986 -7.1644 -1.6827
32 1 5.3640 -8.9788 -3.1672
33 1 6.7436 -11.1130 -2.9713
34 1 5.2810 -4.5473 0.1902
35 1 3.9526 -2.4846 -0.0022
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000068906509.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:48
Heat of formation + Delta-G solvation = 30.540259 kcal
Electronic energy + Delta-G solvation = -22126.073437 eV
Core-core repulsion = 18412.994239 eV
Total energy + Delta-G solvation = -3713.079197 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.066 amu
Computer time = 1.82 seconds
Orbital eigenvalues (eV)
-42.01851 -39.51154 -38.78476 -37.29626 -36.53696 -35.50089 -32.58636 -31.09350
-30.48516 -29.23007 -26.52578 -25.55701 -24.39626 -23.68811 -22.28350 -21.28605
-20.47447 -19.74623 -18.60181 -18.26939 -17.59137 -17.34192 -16.88492 -16.17938
-15.57346 -15.31251 -14.73558 -14.49267 -14.33772 -14.05794 -13.82241 -13.72157
-13.16340 -12.99966 -12.87284 -12.47433 -11.88434 -11.65870 -11.61219 -11.53816
-11.28081 -11.23834 -11.12271 -11.04998 -10.97094 -10.77655 -10.59353 -9.60656
-9.14268 -9.08109 -8.51252 -8.12075 -7.56391 -6.68704 -4.27735 -0.27862
0.28418 1.10229 1.12584 1.58322 1.78017 1.92239 2.18929 2.91944
2.99448 3.02830 3.05462 3.77059 4.28340 4.52947 4.70168 4.78874
4.85125 4.93201 5.01578 5.21278 5.26719 5.33654 5.40453 5.52809
5.65414 5.91854 6.10900 6.22466 6.33184 6.39518 6.58132 6.74274
6.89816 6.98824 7.05095 7.16524 7.49297 7.57838 7.75312 8.76209
9.41572 10.48212
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.039876 B = 0.001988 C = 0.001968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 702.002978 B =14081.058444 C =14223.353929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.854 5.854
2 C 0.041 3.959
3 Si 0.944 3.056
4 H -0.266 1.266
5 H -0.274 1.274
6 H -0.274 1.274
7 C -0.395 4.395
8 H 0.096 0.904
9 O -0.168 6.168
10 C 0.164 3.836
11 C -0.195 4.195
12 C -0.050 4.050
13 C -0.226 4.226
14 C 0.167 3.833
15 N -0.679 5.679
16 C 0.177 3.823
17 C -0.281 4.281
18 C 0.030 3.970
19 C -0.245 4.245
20 N 0.078 4.922
21 O -0.173 6.173
22 O -0.181 6.181
23 S 0.222 5.778
24 C -0.045 4.045
25 C -0.238 4.238
26 H 0.273 0.727
27 H 0.120 0.880
28 H 0.113 0.887
29 H 0.071 0.929
30 H 0.072 0.928
31 H 0.417 0.583
32 H 0.157 0.843
33 H 0.162 0.838
34 H 0.109 0.891
35 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.359 -13.986 -2.113 16.961
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.488 5.488
2 C -0.164 4.164
3 Si 0.768 3.232
4 H -0.190 1.190
5 H -0.199 1.199
6 H -0.199 1.199
7 C -0.471 4.471
8 H 0.113 0.887
9 O -0.069 6.069
10 C 0.108 3.892
11 C -0.215 4.215
12 C -0.069 4.069
13 C -0.227 4.227
14 C 0.045 3.955
15 N -0.308 5.308
16 C -0.054 4.054
17 C -0.313 4.313
18 C -0.005 4.005
19 C -0.448 4.448
20 N 0.591 4.409
21 O -0.384 6.384
22 O -0.391 6.391
23 S 0.474 5.526
24 C -0.064 4.064
25 C -0.257 4.257
26 H 0.083 0.917
27 H 0.138 0.862
28 H 0.131 0.869
29 H 0.090 0.910
30 H 0.090 0.910
31 H 0.257 0.743
32 H 0.175 0.825
33 H 0.179 0.821
34 H 0.127 0.873
35 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 8.520 -12.963 -0.546 15.522
hybrid contribution 0.494 0.621 -1.815 1.981
sum 9.015 -12.342 -2.361 15.465
Atomic orbital electron populations
1.70037 1.06073 1.28070 1.44588 1.25366 0.95906 0.99093 0.96086
0.85601 0.79139 0.79954 0.78490 1.18973 1.19935 1.19913 1.21438
0.91959 0.80572 1.53132 0.88712 1.83977 1.34678 1.11664 1.76631
1.19461 0.90329 0.88074 0.91353 1.20220 0.99815 0.90210 1.11230
1.20509 0.92589 0.96953 0.96818 1.18910 0.93427 0.92737 1.17662
1.20392 0.99183 0.94051 0.81905 1.45216 1.53284 1.21564 1.10700
1.22839 0.93668 0.91260 0.97605 1.19586 1.12929 1.00271 0.98555
1.19934 0.90693 0.94005 0.95876 1.25094 1.20411 0.99825 0.99490
1.42437 0.98092 0.99929 1.00423 1.94526 1.54122 1.44599 1.45185
1.94551 1.63036 1.78783 1.02703 1.84716 1.50691 1.14885 1.02283
1.20627 0.98385 0.91615 0.95804 1.21162 0.93770 0.99029 1.11754
0.91699 0.86184 0.86879 0.91039 0.90983 0.74344 0.82522 0.82073
0.87318 0.85235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 50.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -23.53 13.67 55.48 0.76 -22.77 16
2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16
3 Si 0.94 19.10 29.55 -169.99 -5.02 14.07 16
4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16
5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16
6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16
7 C -0.40 -10.20 9.49 30.89 0.29 -9.90 16
8 H 0.10 2.24 5.20 -52.48 -0.27 1.97 16
9 O -0.17 -4.39 9.76 0.05 0.00 -4.39 16
10 C 0.16 3.51 6.65 -39.11 -0.26 3.25 16
11 C -0.20 -3.57 9.99 -39.39 -0.39 -3.96 16
12 C -0.05 -0.72 9.69 -39.61 -0.38 -1.10 16
13 C -0.23 -2.98 5.25 -104.57 -0.55 -3.53 16
14 C 0.17 1.63 5.76 -5.19 -0.03 1.60 16
15 N -0.68 -5.97 5.75 -60.80 -0.35 -6.32 16
16 C 0.18 1.57 7.24 -15.45 -0.11 1.46 16
17 C -0.28 -2.31 10.21 -40.91 -0.42 -2.73 16
18 C 0.03 0.27 9.80 -41.20 -0.40 -0.13 16
19 C -0.25 -2.75 7.50 -11.29 -0.08 -2.83 16
20 N 0.08 1.06 4.46 33.44 0.15 1.21 16
21 O -0.17 -2.40 18.93 -29.46 -0.56 -2.96 16
22 O -0.18 -2.62 19.08 -29.46 -0.56 -3.18 16
23 S 0.22 2.12 22.36 -107.50 -2.40 -0.28 16
24 C -0.05 -0.68 9.69 -39.61 -0.38 -1.06 16
25 C -0.24 -4.48 9.17 -39.40 -0.36 -4.84 16
26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16
27 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16
28 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16
29 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16
30 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16
31 H 0.42 3.50 8.58 -40.82 -0.35 3.15 16
32 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16
33 H 0.16 1.18 8.00 -52.49 -0.42 0.76 16
34 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16
35 H 0.13 2.48 5.64 -52.49 -0.30 2.19 16
LS Contribution 334.95 15.07 5.05 5.05
Total: -1.00 -28.89 334.95 -9.13 -38.02
By element:
Atomic # 1 Polarization: 7.38 SS G_CDS: -3.00 Total: 4.38 kcal
Atomic # 6 Polarization: -19.64 SS G_CDS: -3.18 Total: -22.82 kcal
Atomic # 7 Polarization: -28.44 SS G_CDS: 0.56 Total: -27.88 kcal
Atomic # 8 Polarization: -9.41 SS G_CDS: -1.12 Total: -10.53 kcal
Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal
Atomic # 16 Polarization: 2.12 SS G_CDS: -2.40 Total: -0.28 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -28.89 -9.13 -38.02 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068906509.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.557 kcal
(2) G-P(sol) polarization free energy of solvation -28.888 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.82 seconds