Wall clock time and date at job start Tue Mar 31 2020 12:06:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31551 * 1
3 3 Si 1.86801 * 120.00096 * 2 1
4 4 H 1.48503 * 109.47232 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47355 * 300.00327 * 3 2 1
6 6 H 1.48507 * 109.46726 * 60.00367 * 3 2 1
7 7 C 1.38652 * 120.00092 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00655 * 179.97438 * 7 2 1
9 9 O 1.34834 * 120.00189 * 0.02562 * 7 2 1
10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2
11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7
12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9
13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10
14 14 C 1.50702 * 119.93331 * 180.29799 * 13 12 11
15 15 N 1.46500 * 109.46789 * 89.99748 * 14 13 12
16 16 C 1.39623 * 119.99625 * 180.02562 * 15 14 13
17 17 C 1.34095 * 125.23795 * 180.02562 * 16 15 14
18 18 C 1.38582 * 114.72048 * 180.02562 * 17 16 15
19 19 C 1.33222 * 114.98175 * 0.02562 * 18 17 16
20 20 N 1.48191 * 125.12575 * 179.97438 * 19 18 17
21 21 O 1.21796 * 119.99865 * 359.97438 * 20 19 18
22 22 O 1.21800 * 119.99886 * 180.02562 * 20 19 18
23 23 S 1.75856 * 109.74921 * 359.73370 * 19 18 17
24 24 C 1.38308 * 120.13808 * 0.27516 * 13 12 11
25 25 C 1.38100 * 120.06790 * 359.97438 * 24 13 12
26 26 H 0.97006 * 120.00187 * 0.02562 * 1 2 3
27 27 H 1.08002 * 120.03090 * 0.02562 * 11 10 9
28 28 H 1.08000 * 119.96243 * 179.74600 * 12 11 10
29 29 H 1.08992 * 109.47246 * 209.99819 * 14 13 12
30 30 H 1.08999 * 109.46761 * 330.00230 * 14 13 12
31 31 H 0.96994 * 120.00364 * 0.02562 * 15 14 13
32 32 H 1.08005 * 122.63766 * 359.97438 * 17 16 15
33 33 H 1.07994 * 122.50846 * 180.02562 * 18 17 16
34 34 H 1.07997 * 119.96346 * 180.02562 * 24 13 12
35 35 H 1.07996 * 120.03027 * 180.02562 * 25 24 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.7096 1.3464 0.0006
5 1 1.8908 2.3965 -1.2125
6 1 1.8908 2.3964 1.2126
7 6 2.0088 -1.2008 -0.0005
8 1 3.0888 -1.2009 -0.0010
9 8 1.3347 -2.3685 -0.0016
10 6 2.0699 -3.5047 0.1045
11 6 1.4364 -4.7352 0.2200
12 6 2.1872 -5.8888 0.3330
13 6 3.5684 -5.8206 0.3203
14 6 4.3847 -7.0820 0.4372
15 7 4.6429 -7.6220 -0.9000
16 6 5.3849 -8.7956 -1.0475
17 6 5.6834 -9.3804 -2.2167
18 6 6.4329 -10.5411 -2.1095
19 6 6.7415 -10.8985 -0.8638
20 7 7.5310 -12.0959 -0.4911
21 8 7.9516 -12.8418 -1.3572
22 8 7.7585 -12.3346 0.6814
23 16 6.0767 -9.7313 0.2712
24 6 4.2022 -4.5972 0.2002
25 6 3.4571 -3.4396 0.0920
26 1 -0.4851 0.8401 -0.0004
27 1 0.3578 -4.7895 0.2251
28 1 1.6951 -6.8456 0.4270
29 1 5.3318 -6.8578 0.9276
30 1 3.8356 -7.8168 1.0259
31 1 4.2986 -7.1644 -1.6827
32 1 5.3640 -8.9788 -3.1672
33 1 6.7436 -11.1130 -2.9713
34 1 5.2810 -4.5473 0.1902
35 1 3.9526 -2.4846 -0.0022
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000068906509.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:47
Heat of formation + Delta-G solvation = 14.013733 kcal
Electronic energy + Delta-G solvation = -22126.790081 eV
Core-core repulsion = 18412.994239 eV
Total energy + Delta-G solvation = -3713.795841 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.066 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.96948 -40.92495 -39.65448 -38.61224 -37.53110 -36.49235 -34.35168 -32.20333
-31.84782 -30.26535 -27.83331 -26.98039 -25.40954 -24.45133 -23.69956 -22.45853
-21.46463 -20.60048 -19.92181 -19.52267 -18.90474 -18.54064 -17.77434 -16.99797
-16.60271 -16.49066 -16.22270 -15.67517 -15.52731 -15.50286 -14.95239 -14.72581
-14.45575 -14.24494 -13.75383 -13.55769 -13.46099 -13.05692 -12.67488 -12.57430
-12.45571 -12.41262 -12.35452 -12.28694 -12.12046 -12.05389 -11.62726 -11.22183
-10.85991 -9.85543 -9.84243 -9.08498 -8.86017 -8.51940 -6.20255 -1.16288
-0.47476 0.24792 0.34699 0.48570 0.54247 0.75203 1.34531 1.41216
1.48615 1.51970 2.08984 2.14102 2.81813 3.13324 3.44940 3.68940
3.85962 3.95361 4.07669 4.12684 4.34289 4.43926 4.52583 4.59177
4.62416 4.74950 4.98758 5.03273 5.10333 5.21640 5.27628 5.47059
5.58995 5.66144 5.66419 5.98114 6.12376 6.25565 6.54522 6.93200
7.71779 8.70817
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.039876 B = 0.001988 C = 0.001968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 702.002978 B =14081.058444 C =14223.353929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.022 4.022
3 Si 1.017 2.983
4 H -0.250 1.250
5 H -0.269 1.269
6 H -0.270 1.270
7 C -0.412 4.412
8 H 0.105 0.895
9 O -0.229 6.229
10 C 0.124 3.876
11 C -0.209 4.209
12 C -0.039 4.039
13 C -0.186 4.186
14 C 0.167 3.833
15 N -0.672 5.672
16 C 0.186 3.814
17 C -0.272 4.272
18 C 0.040 3.960
19 C -0.271 4.271
20 N 0.081 4.919
21 O -0.189 6.189
22 O -0.218 6.218
23 S 0.229 5.771
24 C -0.041 4.041
25 C -0.247 4.247
26 H 0.273 0.727
27 H 0.113 0.887
28 H 0.151 0.849
29 H 0.090 0.910
30 H 0.092 0.908
31 H 0.423 0.577
32 H 0.182 0.818
33 H 0.178 0.822
34 H 0.143 0.857
35 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.428 -15.576 -2.621 19.495
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.555 5.555
2 C -0.220 4.220
3 Si 0.837 3.163
4 H -0.173 1.173
5 H -0.195 1.195
6 H -0.195 1.195
7 C -0.488 4.488
8 H 0.122 0.878
9 O -0.135 6.135
10 C 0.073 3.927
11 C -0.228 4.228
12 C -0.058 4.058
13 C -0.188 4.188
14 C 0.045 3.955
15 N -0.301 5.301
16 C -0.046 4.046
17 C -0.303 4.303
18 C 0.005 3.995
19 C -0.475 4.475
20 N 0.586 4.414
21 O -0.399 6.399
22 O -0.420 6.420
23 S 0.481 5.519
24 C -0.060 4.060
25 C -0.267 4.267
26 H 0.082 0.918
27 H 0.131 0.869
28 H 0.169 0.831
29 H 0.108 0.892
30 H 0.110 0.890
31 H 0.263 0.737
32 H 0.199 0.801
33 H 0.195 0.805
34 H 0.161 0.839
35 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 10.657 -14.652 -1.015 18.146
hybrid contribution -0.034 0.724 -1.698 1.846
sum 10.623 -13.927 -2.713 17.725
Atomic orbital electron populations
1.70176 1.08031 1.28858 1.48461 1.26581 0.96824 1.02804 0.95799
0.84540 0.78348 0.74918 0.78507 1.17305 1.19456 1.19521 1.21864
0.92568 0.81259 1.53143 0.87782 1.83949 1.36208 1.12755 1.80567
1.20060 0.91742 0.87974 0.92958 1.20479 1.00150 0.90553 1.11606
1.20923 0.93150 0.96992 0.94691 1.19307 0.93253 0.93815 1.12395
1.20436 0.99760 0.92549 0.82755 1.44938 1.53210 1.21540 1.10444
1.22849 0.93190 0.90893 0.97640 1.19829 1.11711 0.99371 0.99389
1.20247 0.89570 0.94041 0.95669 1.25254 1.21692 0.99650 1.00886
1.42718 0.98099 1.00536 1.00082 1.94498 1.54784 1.45590 1.44994
1.94535 1.64491 1.79762 1.03198 1.84711 1.50603 1.14491 1.02067
1.20987 0.99961 0.90709 0.94301 1.21262 0.92969 1.00298 1.12142
0.91769 0.86886 0.83090 0.89204 0.88955 0.73667 0.80120 0.80468
0.83901 0.86371
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.90 13.67 21.61 0.30 -53.60 16
2 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16
3 Si 1.02 40.47 29.55 68.60 2.03 42.50 16
4 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16
5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16
6 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16
7 C -0.41 -22.45 9.49 67.92 0.64 -21.81 16
8 H 0.10 5.14 5.20 -2.91 -0.02 5.13 16
9 O -0.23 -12.79 9.76 -22.74 -0.22 -13.01 16
10 C 0.12 5.46 6.65 22.58 0.15 5.61 16
11 C -0.21 -7.53 9.99 22.39 0.22 -7.31 16
12 C -0.04 -0.98 9.69 22.25 0.22 -0.77 16
13 C -0.19 -4.01 5.25 -19.83 -0.10 -4.11 16
14 C 0.17 2.24 5.76 85.63 0.49 2.74 16
15 N -0.67 -7.89 5.75 -346.29 -1.99 -9.88 16
16 C 0.19 2.34 7.24 82.51 0.60 2.93 16
17 C -0.27 -3.11 10.21 21.41 0.22 -2.89 16
18 C 0.04 0.58 9.80 21.22 0.21 0.79 16
19 C -0.27 -5.39 7.50 80.76 0.61 -4.78 16
20 N 0.08 2.12 4.46 -48.11 -0.21 1.90 16
21 O -0.19 -5.13 18.93 18.89 0.36 -4.77 16
22 O -0.22 -6.28 19.08 18.89 0.36 -5.92 16
23 S 0.23 3.55 22.36 -56.49 -1.26 2.29 16
24 C -0.04 -1.07 9.69 22.25 0.22 -0.86 16
25 C -0.25 -9.17 9.17 22.39 0.21 -8.97 16
26 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16
27 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16
28 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16
29 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16
30 H 0.09 1.02 8.08 -2.39 -0.02 1.01 16
31 H 0.42 4.61 8.58 -92.71 -0.80 3.81 16
32 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16
33 H 0.18 1.97 8.00 -2.91 -0.02 1.94 16
34 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16
35 H 0.12 4.59 5.64 -2.91 -0.02 4.57 16
Total: -1.00 -69.95 334.95 3.86 -66.10
By element:
Atomic # 1 Polarization: 14.18 SS G_CDS: 0.37 Total: 14.54 kcal
Atomic # 6 Polarization: -44.28 SS G_CDS: 4.14 Total: -40.14 kcal
Atomic # 7 Polarization: -59.67 SS G_CDS: -1.91 Total: -61.58 kcal
Atomic # 8 Polarization: -24.20 SS G_CDS: 0.50 Total: -23.70 kcal
Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal
Atomic # 16 Polarization: 3.55 SS G_CDS: -1.26 Total: 2.29 kcal
Total: -69.95 3.86 -66.10 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068906509.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.110 kcal
(2) G-P(sol) polarization free energy of solvation -69.954 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.156 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds