Wall clock time and date at job start Tue Mar 31 2020 12:09:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31561 * 1
3 3 Si 1.86797 * 120.00309 * 2 1
4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1
5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1
6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1
7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1
9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1
10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2
11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7
12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9
13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10
14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11
15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12
16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13
17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14
18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14
19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15
20 20 C 1.50701 * 109.47216 * 179.97438 * 19 18 16
21 21 C 1.35346 * 127.92031 * 89.70303 * 20 19 18
22 22 N 1.31742 * 112.46673 * 179.84850 * 21 20 19
23 23 N 1.27582 * 118.26802 * 0.48463 * 22 21 20
24 24 S 1.56503 * 109.22219 * 359.72380 * 23 22 21
25 25 C 1.38123 * 120.06577 * 0.04594 * 14 13 12
26 26 H 0.97000 * 119.99462 * 0.02562 * 1 2 3
27 27 H 1.08002 * 120.03226 * 359.97438 * 11 10 9
28 28 H 1.07993 * 119.96486 * 180.27241 * 12 11 10
29 29 H 1.08001 * 119.93050 * 179.70445 * 13 12 11
30 30 H 1.08997 * 109.47004 * 30.02720 * 15 14 13
31 31 H 1.08999 * 109.46889 * 150.02243 * 15 14 13
32 32 H 1.09002 * 109.47370 * 300.00168 * 19 18 16
33 33 H 1.09004 * 109.47479 * 60.00306 * 19 18 16
34 34 H 1.07996 * 123.76721 * 0.02562 * 21 20 19
35 35 H 1.08006 * 120.03219 * 180.02562 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2497 1.6177 0.0000
4 1 3.7096 1.3463 -0.0006
5 1 1.8909 2.3964 -1.2124
6 1 1.8910 2.3964 1.2126
7 6 2.0088 -1.2008 -0.0005
8 1 3.0888 -1.2009 -0.0010
9 8 1.3347 -2.3685 -0.0016
10 6 2.0698 -3.5048 0.1041
11 6 3.4573 -3.4403 0.0852
12 6 4.2023 -4.5972 0.1986
13 6 3.5684 -5.8208 0.3192
14 6 2.1873 -5.8888 0.3331
15 6 1.5008 -7.2238 0.4651
16 6 1.2649 -7.8051 -0.9051
17 8 1.6176 -7.1974 -1.8880
18 8 0.6629 -8.9979 -1.0335
19 6 0.4679 -9.4959 -2.3834
20 6 -0.2169 -10.8372 -2.3300
21 6 -1.5459 -11.0935 -2.3361
22 7 -1.8102 -12.3830 -2.2826
23 7 -0.8309 -13.1986 -2.2243
24 16 0.5114 -12.3940 -2.2396
25 6 1.4365 -4.7345 0.2256
26 1 -0.4849 0.8401 -0.0004
27 1 3.9527 -2.4857 -0.0140
28 1 5.2811 -4.5473 0.1885
29 1 4.1534 -6.7248 0.4030
30 1 2.1300 -7.9003 1.0435
31 1 0.5456 -7.0924 0.9735
32 1 -0.1499 -8.7942 -2.9439
33 1 1.4350 -9.6015 -2.8750
34 1 -2.3049 -10.3266 -2.3827
35 1 0.3579 -4.7882 0.2370
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000810656657.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:50
Heat of formation + Delta-G solvation = -11.303875 kcal
Electronic energy + Delta-G solvation = -22505.545939 eV
Core-core repulsion = 18790.652244 eV
Total energy + Delta-G solvation = -3714.893695 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.066 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.26838 -40.59231 -39.03851 -37.10813 -36.29638 -33.38625 -32.48919 -32.11050
-29.44074 -29.06924 -27.40387 -25.57081 -25.21014 -22.22283 -21.69309 -21.50684
-20.44180 -19.58672 -17.83461 -17.72317 -17.15398 -16.71321 -16.60453 -15.99109
-15.43623 -15.15793 -14.70859 -14.43634 -14.34432 -13.93011 -13.59392 -13.50719
-13.07999 -12.75579 -12.59084 -12.43310 -12.23955 -11.91752 -11.61703 -11.33589
-10.99394 -10.92690 -10.85819 -10.69790 -10.68313 -10.52143 -10.45483 -10.33229
-10.13392 -9.38407 -8.87223 -8.17924 -7.28494 -6.47163 -4.06313 -0.34567
0.59364 1.23330 1.69708 1.94924 2.18776 2.31393 2.74092 3.11189
3.12325 3.17949 3.71863 3.94295 4.12358 4.25270 4.48060 4.71327
4.84368 4.90654 5.03661 5.07086 5.14894 5.19203 5.41565 5.55995
5.67561 5.85435 6.10298 6.18018 6.26638 6.58522 6.84093 7.02040
7.16204 7.27628 7.30625 7.38600 7.68910 7.75213 7.97573 8.98580
9.68017 10.70945
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.028753 B = 0.002174 C = 0.002069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 973.587748 B =12879.123067 C =13531.831292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.862 5.862
2 C 0.039 3.961
3 Si 0.941 3.059
4 H -0.267 1.267
5 H -0.276 1.276
6 H -0.276 1.276
7 C -0.391 4.391
8 H 0.093 0.907
9 O -0.178 6.178
10 C 0.154 3.846
11 C -0.226 4.226
12 C -0.074 4.074
13 C -0.195 4.195
14 C -0.046 4.046
15 C -0.062 4.062
16 C 0.463 3.537
17 O -0.484 6.484
18 O -0.359 6.359
19 C 0.150 3.850
20 C -0.270 4.270
21 C 0.023 3.977
22 N -0.244 5.244
23 N -0.285 5.285
24 S 0.455 5.545
25 C -0.172 4.172
26 H 0.269 0.731
27 H 0.128 0.872
28 H 0.109 0.891
29 H 0.105 0.895
30 H 0.112 0.888
31 H 0.113 0.887
32 H 0.099 0.901
33 H 0.092 0.908
34 H 0.206 0.794
35 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.030 -20.300 -2.207 20.643
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.497 5.497
2 C -0.166 4.166
3 Si 0.766 3.234
4 H -0.191 1.191
5 H -0.201 1.201
6 H -0.201 1.201
7 C -0.468 4.468
8 H 0.110 0.890
9 O -0.081 6.081
10 C 0.100 3.900
11 C -0.245 4.245
12 C -0.093 4.093
13 C -0.214 4.214
14 C -0.047 4.047
15 C -0.100 4.100
16 C 0.305 3.695
17 O -0.368 6.368
18 O -0.277 6.277
19 C 0.074 3.926
20 C -0.408 4.408
21 C -0.142 4.142
22 N -0.109 5.109
23 N -0.265 5.265
24 S 0.590 5.410
25 C -0.191 4.191
26 H 0.079 0.921
27 H 0.145 0.855
28 H 0.127 0.873
29 H 0.123 0.877
30 H 0.130 0.870
31 H 0.131 0.869
32 H 0.117 0.883
33 H 0.110 0.890
34 H 0.222 0.778
35 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 3.001 -21.821 -2.475 22.165
hybrid contribution -0.175 2.392 -0.269 2.414
sum 2.826 -19.429 -2.744 19.824
Atomic orbital electron populations
1.70050 1.05956 1.27571 1.46169 1.25296 0.95857 0.98843 0.96560
0.85640 0.79133 0.80353 0.78258 1.19095 1.20149 1.20128 1.21372
0.91826 0.80769 1.52798 0.88999 1.83976 1.34275 1.11396 1.78487
1.19265 0.90257 0.87988 0.92485 1.21224 0.93839 0.99105 1.10370
1.20694 0.98505 0.92243 0.97814 1.20369 0.93142 0.97100 1.10764
1.18644 0.93351 0.91413 1.01247 1.20283 1.03777 0.95253 0.90664
1.23951 0.74153 0.78120 0.93311 1.90748 1.46382 1.59389 1.40280
1.86566 1.73030 1.36829 1.31316 1.20853 1.00707 0.88251 0.82828
1.26910 0.98141 1.03301 1.12438 1.23888 0.95774 0.93849 1.00719
1.71365 1.23568 1.01131 1.14803 1.78852 0.99279 1.26752 1.21633
1.81547 1.18978 0.91024 1.49403 1.19964 0.99165 0.89974 1.10039
0.92062 0.85473 0.87289 0.87708 0.87008 0.86862 0.88261 0.89010
0.77754 0.86607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.13 13.67 55.48 0.76 -24.37 16
2 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16
3 Si 0.94 20.36 29.55 -169.99 -5.02 15.33 16
4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16
6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16
7 C -0.39 -10.85 9.49 30.89 0.29 -10.56 16
8 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16
9 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16
10 C 0.15 3.68 6.65 -39.11 -0.26 3.42 16
11 C -0.23 -4.86 9.17 -39.39 -0.36 -5.22 16
12 C -0.07 -1.34 10.04 -39.61 -0.40 -1.74 16
13 C -0.19 -3.24 9.70 -39.53 -0.38 -3.62 16
14 C -0.05 -0.78 4.37 -104.65 -0.46 -1.24 16
15 C -0.06 -0.75 5.94 -29.03 -0.17 -0.93 16
16 C 0.46 6.04 7.95 36.01 0.29 6.32 16
17 O -0.48 -8.07 15.78 -18.75 -0.30 -8.37 16
18 O -0.36 -3.81 10.20 -39.24 -0.40 -4.21 16
19 C 0.15 1.28 6.05 36.01 0.22 1.50 16
20 C -0.27 -2.14 6.32 -35.34 -0.22 -2.36 16
21 C 0.02 0.19 11.53 -18.62 -0.21 -0.02 16
22 N -0.24 -2.61 11.68 29.32 0.34 -2.27 16
23 N -0.28 -2.93 12.54 60.35 0.76 -2.18 16
24 S 0.46 3.28 23.40 -107.50 -2.52 0.77 16
25 C -0.17 -3.55 9.65 -39.40 -0.38 -3.93 16
26 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16
27 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16
28 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16
29 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16
30 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16
31 H 0.11 1.17 8.08 -51.93 -0.42 0.75 16
32 H 0.10 0.81 8.13 -51.93 -0.42 0.38 16
33 H 0.09 0.69 8.13 -51.93 -0.42 0.27 16
34 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16
35 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16
LS Contribution 334.09 15.07 5.03 5.03
Total: -1.00 -33.93 334.09 -6.57 -40.50
By element:
Atomic # 1 Polarization: 5.29 SS G_CDS: -3.08 Total: 2.21 kcal
Atomic # 6 Polarization: -15.27 SS G_CDS: -2.15 Total: -17.42 kcal
Atomic # 7 Polarization: -30.67 SS G_CDS: 1.86 Total: -28.81 kcal
Atomic # 8 Polarization: -16.92 SS G_CDS: -0.70 Total: -17.62 kcal
Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal
Atomic # 16 Polarization: 3.28 SS G_CDS: -2.52 Total: 0.77 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -33.93 -6.57 -40.50 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000810656657.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.193 kcal
(2) G-P(sol) polarization free energy of solvation -33.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.733 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.304 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds